Wall clock time and date at job start Tue Mar 31 2020 01:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86799 * 119.99863 * 2 1 4 4 H 1.48494 * 109.47371 * 270.00236 * 3 2 1 5 5 H 1.48500 * 109.47431 * 30.00119 * 3 2 1 6 6 H 1.48499 * 109.47245 * 149.99894 * 3 2 1 7 7 C 1.38634 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00326 * 179.97438 * 7 2 1 9 9 O 1.34815 * 120.00006 * 359.97438 * 7 2 1 10 10 C 1.35690 * 117.00282 * 185.05908 * 9 7 2 11 11 C 1.39005 * 119.94313 * 354.44815 * 10 9 7 12 12 C 1.37820 * 120.05879 * 180.02562 * 11 10 9 13 13 C 1.39478 * 119.94315 * 0.02562 * 12 11 10 14 14 C 1.48247 * 120.05944 * 179.97438 * 13 12 11 15 15 C 1.39877 * 119.79617 * 0.02562 * 14 13 12 16 16 C 1.36455 * 120.29530 * 180.27233 * 15 14 13 17 17 C 1.39574 * 119.88376 * 359.50256 * 16 15 14 18 18 C 1.46733 * 134.19035 * 180.19393 * 17 16 15 19 19 C 1.34057 * 106.21121 * 180.27220 * 18 17 16 20 20 O 1.34448 * 110.16616 * 0.02562 * 19 18 17 21 21 C 1.34860 * 110.86934 * 359.97438 * 20 19 18 22 22 C 1.38689 * 133.36331 * 180.02562 * 21 20 19 23 23 C 1.39481 * 119.88878 * 0.27253 * 13 12 11 24 24 C 1.37825 * 119.94135 * 359.44744 * 23 13 12 25 25 H 0.96998 * 120.00323 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.97581 * 0.02562 * 11 10 9 27 27 H 1.08007 * 120.03349 * 180.02562 * 12 11 10 28 28 H 1.08000 * 119.85693 * 359.97438 * 15 14 13 29 29 H 1.08007 * 120.06130 * 179.72454 * 16 15 14 30 30 H 1.08002 * 126.89183 * 0.29401 * 18 17 16 31 31 H 1.07998 * 124.91916 * 179.97438 * 19 18 17 32 32 H 1.07997 * 120.13873 * 359.97438 * 22 21 20 33 33 H 1.07997 * 120.02798 * 179.72796 * 23 13 12 34 34 H 1.07994 * 119.97664 * 180.27594 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4471 2.6527 0.7000 6 1 3.5471 1.4403 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 3.0888 -1.2006 -0.0010 9 8 1.3348 -2.3681 -0.0005 10 6 2.0698 -3.5038 0.1055 11 6 3.4581 -3.4356 0.0914 12 6 4.2070 -4.5877 0.1985 13 6 3.5706 -5.8228 0.3205 14 6 4.3736 -7.0637 0.4353 15 6 5.7705 -6.9915 0.4213 16 6 6.5195 -8.1277 0.5207 17 6 5.8898 -9.3669 0.6473 18 6 6.3673 -10.7483 0.7771 19 6 5.2719 -11.5170 0.8562 20 8 4.1656 -10.7560 0.7884 21 6 4.4865 -9.4522 0.6621 22 6 3.7337 -8.2923 0.5549 23 6 2.1774 -5.8892 0.3281 24 6 1.4331 -4.7336 0.2266 25 1 -0.4850 0.8400 0.0004 26 1 3.9505 -2.4790 -0.0035 27 1 5.2857 -4.5342 0.1879 28 1 6.2583 -6.0326 0.3266 29 1 7.5978 -8.0680 0.5050 30 1 7.3950 -11.0792 0.8039 31 1 5.2772 -12.5921 0.9587 32 1 2.6550 -8.3431 0.5647 33 1 1.6824 -6.8448 0.4181 34 1 0.3544 -4.7840 0.2369 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243592264.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:51 Heat of formation + Delta-G solvation = 27.396203 kcal Electronic energy + Delta-G solvation = -19636.227584 eV Core-core repulsion = 16466.242916 eV Total energy + Delta-G solvation = -3169.984669 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.089 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.33657 -39.31767 -38.02781 -36.16902 -32.93421 -32.35181 -30.90075 -30.39700 -29.87549 -27.31998 -25.49314 -23.52564 -22.71180 -21.77462 -21.06796 -20.38875 -18.18652 -17.35139 -17.19560 -17.03451 -16.03518 -15.56621 -14.61678 -14.57862 -14.42709 -13.81191 -13.76462 -13.74413 -13.34837 -12.95872 -12.76228 -12.53392 -12.45215 -11.87242 -11.73339 -11.38599 -11.24098 -11.00518 -10.91472 -10.55574 -10.43178 -10.11590 -9.43521 -9.03237 -8.56787 -8.32420 -8.29972 -6.97955 -6.57963 -4.14174 0.81532 1.41725 2.12049 2.15019 2.61094 2.81709 3.06855 3.07808 3.12644 3.85767 3.87903 4.47179 4.58328 4.68542 4.97831 4.99390 5.07156 5.20742 5.24697 5.33159 5.40006 5.54756 5.61526 5.74446 5.94746 6.09440 6.11313 6.25947 6.37654 6.43803 6.58186 6.59373 6.65892 6.81885 6.97049 7.14976 7.22806 7.28394 7.33008 7.68229 7.87013 8.87011 9.54782 10.59139 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.047733 B = 0.003094 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.451803 B = 9048.389605 C = 9619.160746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.392 4.392 8 H 0.095 0.905 9 O -0.168 6.168 10 C 0.162 3.838 11 C -0.236 4.236 12 C -0.048 4.048 13 C -0.165 4.165 14 C 0.033 3.967 15 C -0.140 4.140 16 C -0.066 4.066 17 C -0.158 4.158 18 C -0.207 4.207 19 C -0.008 4.008 20 O -0.199 6.199 21 C 0.063 3.937 22 C -0.129 4.129 23 C -0.054 4.054 24 C -0.193 4.193 25 H 0.273 0.727 26 H 0.131 0.869 27 H 0.113 0.887 28 H 0.130 0.870 29 H 0.123 0.877 30 H 0.153 0.847 31 H 0.203 0.797 32 H 0.132 0.868 33 H 0.117 0.883 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.008 -15.749 1.226 19.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.468 4.468 8 H 0.113 0.887 9 O -0.070 6.070 10 C 0.106 3.894 11 C -0.255 4.255 12 C -0.066 4.066 13 C -0.166 4.166 14 C 0.033 3.967 15 C -0.158 4.158 16 C -0.084 4.084 17 C -0.159 4.159 18 C -0.226 4.226 19 C -0.073 4.073 20 O -0.101 6.101 21 C 0.016 3.984 22 C -0.148 4.148 23 C -0.072 4.072 24 C -0.213 4.213 25 H 0.083 0.917 26 H 0.148 0.852 27 H 0.131 0.869 28 H 0.148 0.852 29 H 0.141 0.859 30 H 0.171 0.829 31 H 0.220 0.780 32 H 0.150 0.850 33 H 0.135 0.865 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.272 -15.582 1.214 18.702 hybrid contribution 0.726 0.700 -0.001 1.009 sum 10.998 -14.881 1.213 18.544 Atomic orbital electron populations 1.70037 1.06064 1.28051 1.44811 1.25351 0.95887 0.99044 0.96219 0.85669 0.78972 0.79736 0.78853 1.19726 1.20123 1.19031 1.21411 0.91999 0.80671 1.52726 0.88720 1.83952 1.34705 1.11654 1.76645 1.19511 0.90315 0.87957 0.91598 1.21100 0.93695 0.98957 1.11798 1.20827 0.98537 0.91301 0.95912 1.18117 0.92616 0.91152 1.14713 1.18524 0.92514 0.91404 0.94253 1.20867 0.93104 0.98489 1.03383 1.20132 0.99525 0.90154 0.98572 1.19898 0.93028 0.94180 1.08792 1.22468 0.99603 0.91319 1.09229 1.23851 0.83315 0.96827 1.03278 1.83999 1.34229 1.15899 1.75938 1.19503 0.93477 0.83137 1.02280 1.19872 0.99721 0.87590 1.07590 1.20747 0.92566 0.97005 0.96867 1.20156 0.99752 0.90094 1.11251 0.91745 0.85165 0.86881 0.85173 0.85878 0.82925 0.78033 0.85006 0.86523 0.86126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.39 13.67 55.48 0.76 -23.63 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.81 29.55 -169.99 -5.02 14.78 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 7 C -0.39 -10.58 9.48 30.88 0.29 -10.29 16 8 H 0.10 2.34 5.19 -52.49 -0.27 2.07 16 9 O -0.17 -4.63 9.75 0.28 0.00 -4.63 16 10 C 0.16 3.78 6.65 -39.01 -0.26 3.52 16 11 C -0.24 -4.94 9.15 -39.45 -0.36 -5.30 16 12 C -0.05 -0.85 9.41 -39.27 -0.37 -1.22 16 13 C -0.17 -2.89 5.88 -104.86 -0.62 -3.51 16 14 C 0.03 0.52 5.88 -104.87 -0.62 -0.09 16 15 C -0.14 -1.95 9.35 -39.61 -0.37 -2.32 16 16 C -0.07 -0.84 10.04 -39.73 -0.40 -1.24 16 17 C -0.16 -2.14 6.40 -105.08 -0.67 -2.82 16 18 C -0.21 -2.20 11.14 -37.62 -0.42 -2.62 16 19 C -0.01 -0.08 11.96 29.26 0.35 0.27 16 20 O -0.20 -2.65 10.58 3.77 0.04 -2.61 16 21 C 0.06 0.93 7.40 -38.52 -0.29 0.64 16 22 C -0.13 -1.94 9.44 -39.12 -0.37 -2.31 16 23 C -0.05 -0.95 9.41 -39.27 -0.37 -1.32 16 24 C -0.19 -3.97 9.98 -39.44 -0.39 -4.37 16 25 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.13 2.69 5.62 -52.48 -0.30 2.39 16 27 H 0.11 1.68 6.16 -52.48 -0.32 1.36 16 28 H 0.13 1.58 6.15 -52.49 -0.32 1.26 16 29 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 30 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 31 H 0.20 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.13 1.81 6.16 -52.49 -0.32 1.49 16 33 H 0.12 1.74 6.17 -52.49 -0.32 1.42 16 34 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 LS Contribution 297.94 15.07 4.49 4.49 Total: -1.00 -30.75 297.94 -7.37 -38.13 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -2.69 Total: 5.46 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: -4.95 Total: -31.99 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.76 Total: -23.63 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: 0.04 Total: -7.24 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.75 -7.37 -38.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592264.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.525 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds