Wall clock time and date at job start Tue Mar 31 2020 01:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86804 * 120.00025 * 2 1 4 4 H 1.48501 * 109.47030 * 269.99810 * 3 2 1 5 5 H 1.48492 * 109.46897 * 29.99844 * 3 2 1 6 6 H 1.48494 * 109.47112 * 150.00086 * 3 2 1 7 7 C 1.38634 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00116 * 179.97438 * 7 2 1 9 9 O 1.34812 * 119.99787 * 359.97438 * 7 2 1 10 10 C 1.35690 * 116.99963 * 185.05592 * 9 7 2 11 11 C 1.39023 * 119.93951 * 354.45455 * 10 9 7 12 12 C 1.37799 * 120.06680 * 180.02562 * 11 10 9 13 13 C 1.39543 * 119.93515 * 359.97438 * 12 11 10 14 14 C 1.48101 * 120.06107 * 179.97438 * 13 12 11 15 15 C 1.39075 * 120.32786 * 309.99279 * 14 13 12 16 16 C 1.38397 * 120.12260 * 179.70415 * 15 14 13 17 17 C 1.38006 * 120.83979 * 0.02562 * 16 15 14 18 18 C 1.38943 * 120.23277 * 0.02562 * 17 16 15 19 19 O 1.34863 * 133.34061 * 180.02562 * 18 17 16 20 20 C 1.34433 * 110.86082 * 179.97438 * 19 18 17 21 21 C 1.34118 * 110.09836 * 359.97438 * 20 19 18 22 22 C 1.40378 * 119.39677 * 0.02562 * 18 17 16 23 23 C 1.39544 * 119.87686 * 0.25312 * 13 12 11 24 24 C 1.37801 * 119.93557 * 359.53254 * 23 13 12 25 25 H 0.96996 * 119.99924 * 359.97438 * 1 2 3 26 26 H 1.08010 * 119.96675 * 359.97438 * 11 10 9 27 27 H 1.08004 * 120.03428 * 179.97438 * 12 11 10 28 28 H 1.08007 * 119.93841 * 359.73212 * 15 14 13 29 29 H 1.08001 * 119.58003 * 180.02562 * 16 15 14 30 30 H 1.08002 * 119.88318 * 180.02562 * 17 16 15 31 31 H 1.07996 * 124.94919 * 180.02562 * 20 19 18 32 32 H 1.08008 * 126.90557 * 179.97438 * 21 20 19 33 33 H 1.08001 * 120.03342 * 179.75081 * 23 13 12 34 34 H 1.07997 * 119.96673 * 180.20922 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4402 0.7000 7 6 2.0088 -1.2006 0.0005 8 1 3.0888 -1.2006 0.0001 9 8 1.3347 -2.3681 0.0016 10 6 2.0697 -3.5037 0.1086 11 6 3.4582 -3.4354 0.0945 12 6 4.2071 -4.5871 0.2025 13 6 3.5706 -5.8226 0.3266 14 6 4.3728 -7.0622 0.4423 15 6 5.3961 -7.3234 -0.4626 16 6 6.1470 -8.4801 -0.3469 17 6 5.8957 -9.3890 0.6608 18 6 4.8788 -9.1534 1.5778 19 8 4.4132 -9.8407 2.6406 20 6 3.3933 -9.1874 3.2238 21 6 3.1452 -8.0429 2.5702 22 6 4.1102 -7.9837 1.4689 23 6 2.1767 -5.8887 0.3357 24 6 1.4329 -4.7333 0.2318 25 1 -0.4850 0.8400 0.0004 26 1 3.9504 -2.4788 -0.0020 27 1 5.2858 -4.5335 0.1911 28 1 5.6053 -6.6221 -1.2569 29 1 6.9399 -8.6740 -1.0542 30 1 6.4916 -10.2865 0.7369 31 1 2.8531 -9.5333 4.0927 32 1 2.3857 -7.3123 2.8069 33 1 1.6814 -6.8440 0.4276 34 1 0.3541 -4.7835 0.2422 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243592309.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:49 Heat of formation + Delta-G solvation = 25.559928 kcal Electronic energy + Delta-G solvation = -19964.643506 eV Core-core repulsion = 16794.579210 eV Total energy + Delta-G solvation = -3170.064295 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.089 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.30911 -39.16806 -37.88921 -36.23778 -32.88376 -32.32934 -31.00026 -30.20297 -29.45073 -27.58280 -25.41813 -23.34925 -22.48799 -21.77914 -21.46293 -20.16322 -18.09520 -17.42223 -17.12600 -16.73297 -15.99356 -15.63657 -14.81447 -14.63771 -14.43617 -13.86526 -13.64519 -13.59720 -13.17411 -12.81391 -12.73765 -12.59486 -12.10976 -11.86643 -11.68738 -11.62904 -11.31248 -10.90570 -10.71922 -10.54847 -10.48281 -10.05948 -9.42143 -8.93724 -8.53150 -8.28367 -8.14845 -7.09009 -6.53472 -4.11149 0.90407 1.43225 2.16874 2.23878 2.50229 2.85960 3.08534 3.09675 3.14521 3.81958 3.90418 4.49039 4.59134 4.73143 5.00842 5.08686 5.16174 5.19429 5.26884 5.42129 5.49689 5.60528 5.71610 5.76376 5.95851 6.11729 6.23808 6.26705 6.38275 6.45212 6.61889 6.63351 6.69522 6.84487 6.99789 7.16213 7.26150 7.29805 7.35488 7.72177 7.91516 8.91874 9.60358 10.64003 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.032450 B = 0.003596 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.659534 B = 7783.720372 C = 8238.809753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.172 6.172 10 C 0.160 3.840 11 C -0.235 4.235 12 C -0.049 4.049 13 C -0.163 4.163 14 C 0.046 3.954 15 C -0.144 4.144 16 C -0.086 4.086 17 C -0.130 4.130 18 C 0.052 3.948 19 O -0.201 6.201 20 C -0.012 4.012 21 C -0.192 4.192 22 C -0.130 4.130 23 C -0.051 4.051 24 C -0.194 4.194 25 H 0.271 0.729 26 H 0.130 0.870 27 H 0.110 0.890 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.205 0.795 32 H 0.158 0.842 33 H 0.113 0.887 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.969 -14.611 2.512 17.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.074 6.074 10 C 0.105 3.895 11 C -0.255 4.255 12 C -0.068 4.068 13 C -0.164 4.164 14 C 0.046 3.954 15 C -0.162 4.162 16 C -0.104 4.104 17 C -0.148 4.148 18 C 0.005 3.995 19 O -0.103 6.103 20 C -0.076 4.076 21 C -0.211 4.211 22 C -0.131 4.131 23 C -0.070 4.070 24 C -0.213 4.213 25 H 0.081 0.919 26 H 0.147 0.853 27 H 0.128 0.872 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.222 0.778 32 H 0.176 0.824 33 H 0.131 0.869 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.625 -14.616 2.574 17.165 hybrid contribution 0.327 0.988 0.066 1.043 sum 8.952 -13.628 2.640 16.518 Atomic orbital electron populations 1.70039 1.06017 1.27892 1.45349 1.25321 0.95863 0.98944 0.96325 0.85692 0.78966 0.79887 0.78811 1.19773 1.20163 1.19094 1.21376 0.91926 0.80737 1.52861 0.88859 1.83955 1.34563 1.11581 1.77318 1.19489 0.90276 0.87989 0.91750 1.21091 0.93711 0.98901 1.11764 1.20775 0.98355 0.91222 0.96399 1.18152 0.92678 0.91256 1.14338 1.18284 0.93564 0.92118 0.91432 1.21174 0.96828 0.98152 1.00027 1.20799 0.99187 0.93497 0.96928 1.19791 0.97999 1.01827 0.95206 1.19589 0.97993 0.91862 0.90020 1.83980 1.43330 1.45793 1.37176 1.23902 0.90767 0.93367 0.99545 1.22591 1.02353 0.99500 0.96704 1.19931 0.98766 0.96173 0.98214 1.20658 0.92296 0.96779 0.97243 1.20139 0.99626 0.90121 1.11439 0.91860 0.85268 0.87226 0.85296 0.85074 0.85653 0.77839 0.82440 0.86942 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.71 13.67 55.48 0.76 -23.95 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.07 29.55 -169.99 -5.02 15.05 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.39 -10.75 9.48 30.88 0.29 -10.46 16 8 H 0.09 2.35 5.19 -52.49 -0.27 2.08 16 9 O -0.17 -4.80 9.75 0.29 0.00 -4.80 16 10 C 0.16 3.79 6.65 -39.00 -0.26 3.53 16 11 C -0.24 -5.02 9.15 -39.45 -0.36 -5.38 16 12 C -0.05 -0.91 9.51 -39.26 -0.37 -1.28 16 13 C -0.16 -2.91 5.44 -104.88 -0.57 -3.48 16 14 C 0.05 0.73 5.48 -104.71 -0.57 0.16 16 15 C -0.14 -1.96 9.51 -39.21 -0.37 -2.34 16 16 C -0.09 -0.99 9.99 -39.61 -0.40 -1.39 16 17 C -0.13 -1.58 10.05 -39.41 -0.40 -1.97 16 18 C 0.05 0.75 7.41 -38.52 -0.29 0.46 16 19 O -0.20 -2.68 10.58 3.80 0.04 -2.64 16 20 C -0.01 -0.13 11.97 29.28 0.35 0.22 16 21 C -0.19 -2.61 10.41 -37.69 -0.39 -3.00 16 22 C -0.13 -2.00 6.04 -104.92 -0.63 -2.64 16 23 C -0.05 -0.93 8.96 -39.25 -0.35 -1.29 16 24 C -0.19 -4.04 9.98 -39.45 -0.39 -4.43 16 25 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.13 2.74 5.62 -52.48 -0.30 2.44 16 27 H 0.11 1.75 8.04 -52.48 -0.42 1.33 16 28 H 0.13 1.61 8.04 -52.48 -0.42 1.19 16 29 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.21 1.38 8.06 -52.49 -0.42 0.95 16 32 H 0.16 2.03 7.92 -52.48 -0.42 1.61 16 33 H 0.11 1.80 7.91 -52.49 -0.42 1.39 16 34 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 LS Contribution 303.67 15.07 4.58 4.58 Total: -1.00 -31.01 303.67 -7.53 -38.54 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -3.07 Total: 5.52 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: -4.81 Total: -32.29 kcal Atomic # 7 Polarization: -24.71 SS G_CDS: 0.76 Total: -23.95 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: 0.04 Total: -7.44 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.01 -7.53 -38.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592309.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.096 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds