Wall clock time and date at job start Tue Mar 31 2020 02:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46950 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47074 * 119.99839 * 8 6 4 11 11 H 1.48505 * 109.46997 * 239.99833 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.50694 * 109.47033 * 293.95020 * 12 2 1 14 14 C 1.38686 * 126.17819 * 260.02832 * 13 12 2 15 15 N 1.31401 * 108.98751 * 179.97438 * 14 13 12 16 16 N 1.39949 * 108.83330 * 0.02562 * 15 14 13 17 17 C 1.36561 * 132.53650 * 180.02562 * 16 15 14 18 18 C 1.35447 * 119.14681 * 179.97438 * 17 16 15 19 19 C 1.40413 * 119.44596 * 359.97438 * 18 17 16 20 20 Cl 1.73607 * 119.87849 * 180.02562 * 19 18 17 21 21 N 1.31339 * 120.24256 * 359.97438 * 19 18 17 22 22 C 1.34010 * 120.79087 * 359.76043 * 21 19 18 23 23 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 24 24 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 26 26 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 27 27 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 28 28 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 30 30 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 31 31 H 1.08000 * 125.51101 * 359.95669 * 14 13 12 32 32 H 1.07998 * 120.42382 * 359.94839 * 17 16 15 33 33 H 1.08000 * 120.28003 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 0.8157 3.2441 3.9915 10 1 2.8249 4.5945 3.8430 11 1 0.7549 5.3877 2.8597 12 6 1.9954 -0.7660 -1.1377 13 6 1.6370 -2.2204 -0.9729 14 6 2.4729 -3.2211 -0.5007 15 7 1.8166 -4.3595 -0.4957 16 7 0.5191 -4.1350 -0.9698 17 6 -0.5498 -4.9629 -1.1619 18 6 -1.7051 -4.4472 -1.6454 19 6 -1.7799 -3.0759 -1.9378 20 17 -3.2554 -2.4029 -2.5574 21 7 -0.7380 -2.3003 -1.7434 22 6 0.4081 -2.7993 -1.2605 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.0797 1.3445 -0.1083 27 1 1.5610 1.9274 -0.8309 28 1 2.9857 4.9183 0.7765 29 1 1.5611 -0.3871 -2.0628 30 1 3.0797 -0.6610 -1.1757 31 1 3.4978 -3.0867 -0.1878 32 1 -0.4747 -6.0153 -0.9316 33 1 -2.5617 -5.0853 -1.8047 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248873780.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:28 Heat of formation + Delta-G solvation = 128.822657 kcal Electronic energy + Delta-G solvation = -19140.631305 eV Core-core repulsion = 16037.197470 eV Total energy + Delta-G solvation = -3103.433835 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.079 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.44386 -38.43903 -36.87557 -36.45482 -34.13218 -32.46209 -31.11739 -30.01572 -27.00419 -26.39499 -24.94531 -23.84011 -22.95754 -21.05380 -19.98261 -18.33718 -17.57598 -16.67268 -16.34074 -16.17046 -14.85766 -14.59018 -14.21244 -13.93735 -13.85355 -13.65189 -13.60530 -13.28499 -12.39355 -11.85280 -11.68812 -11.52122 -11.40694 -11.32280 -11.10957 -10.84096 -10.76241 -10.58279 -10.32565 -9.97824 -9.80915 -9.50619 -9.14191 -8.38088 -7.84797 -7.09701 -5.96558 -3.97054 0.25392 0.63258 1.32752 1.92366 2.56204 3.16108 3.35000 3.42080 3.47682 3.77307 3.97393 4.22550 4.48921 4.83870 4.87995 5.14689 5.23883 5.32176 5.40317 5.53664 5.75601 6.08622 6.24761 6.31305 6.43228 6.48944 6.62296 6.94115 7.31272 7.34585 7.37090 7.44864 7.87915 8.16173 8.30831 8.64113 9.11065 9.66759 11.14389 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.020397 B = 0.004534 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.441149 B = 6173.593472 C = 7034.543727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.537 5.537 3 C 0.192 3.808 4 C -0.502 4.502 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.131 3.869 13 C -0.177 4.177 14 C 0.106 3.894 15 N -0.307 5.307 16 N -0.322 5.322 17 C 0.180 3.820 18 C -0.219 4.219 19 C 0.237 3.763 20 Cl -0.005 7.005 21 N -0.434 5.434 22 C 0.259 3.741 23 H 0.015 0.985 24 H 0.043 0.957 25 H 0.064 0.936 26 H 0.030 0.970 27 H -0.008 1.008 28 H 0.260 0.740 29 H 0.035 0.965 30 H 0.081 0.919 31 H 0.203 0.797 32 H 0.186 0.814 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.447 -19.299 -6.765 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.261 5.261 3 C 0.068 3.932 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 C 0.002 3.998 13 C -0.190 4.190 14 C -0.072 4.072 15 N -0.131 5.131 16 N -0.095 5.095 17 C 0.045 3.955 18 C -0.244 4.244 19 C 0.043 3.957 20 Cl 0.023 6.977 21 N -0.148 5.148 22 C 0.034 3.966 23 H 0.033 0.967 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.009 0.991 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.220 0.780 32 H 0.203 0.797 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -7.954 -19.588 -6.240 22.043 hybrid contribution -0.766 1.056 0.052 1.306 sum -8.720 -18.532 -6.188 21.396 Atomic orbital electron populations 1.22175 0.88593 0.99182 1.00232 1.62192 1.07329 1.17421 1.39196 1.19749 0.95337 0.81519 0.96643 1.21202 1.34403 0.96837 1.01670 0.91947 1.24976 0.95407 0.97335 0.96919 1.69970 1.38666 1.11331 1.33994 0.86468 0.78110 0.79313 0.83686 1.19739 1.21035 1.21158 1.20299 0.99895 0.86209 0.93388 1.19926 0.89965 0.98229 1.10902 1.23868 1.00504 0.88548 0.94266 1.77868 0.86568 1.22918 1.25738 1.47104 1.10749 1.08171 1.43428 1.21887 0.83086 0.97420 0.93065 1.21347 0.99545 0.94900 1.08646 1.22080 0.89638 0.89455 0.94493 1.98442 1.28418 1.86446 1.84376 1.67581 0.97420 1.36103 1.13666 1.20006 0.93643 0.82039 1.00959 0.96695 0.93813 0.91717 0.95160 0.99056 0.93061 0.94693 0.90085 0.78037 0.79737 0.81011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.03 8.76 60.06 0.53 1.55 16 2 N -0.54 -12.25 4.74 -245.82 -1.17 -13.42 16 3 C 0.19 5.15 4.72 -4.97 -0.02 5.13 16 4 C -0.50 -14.49 8.52 -34.44 -0.29 -14.79 16 5 H 0.06 1.81 7.10 -52.48 -0.37 1.43 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 8 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 C 0.13 2.50 5.47 -4.98 -0.03 2.47 16 13 C -0.18 -2.99 5.33 -104.23 -0.56 -3.54 16 14 C 0.11 1.53 11.88 -17.57 -0.21 1.32 16 15 N -0.31 -4.42 12.66 30.47 0.39 -4.04 16 16 N -0.32 -4.42 3.90 -12.21 -0.05 -4.47 16 17 C 0.18 1.65 11.30 -16.44 -0.19 1.46 16 18 C -0.22 -1.83 9.84 -39.76 -0.39 -2.22 16 19 C 0.24 2.83 7.33 -16.94 -0.12 2.71 16 20 Cl -0.01 -0.06 29.13 -51.86 -1.51 -1.57 16 21 N -0.43 -6.81 8.78 -9.33 -0.08 -6.89 16 22 C 0.26 4.18 6.50 -155.52 -1.01 3.17 16 23 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.04 0.89 4.74 -51.93 -0.25 0.64 16 25 H 0.06 1.50 6.86 -51.93 -0.36 1.14 16 26 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16 27 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.04 0.69 8.12 -51.93 -0.42 0.27 16 30 H 0.08 1.43 7.93 -51.93 -0.41 1.02 16 31 H 0.20 2.24 8.06 -52.49 -0.42 1.82 16 32 H 0.19 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16 LS Contribution 299.89 15.07 4.52 4.52 Total: -1.00 -33.85 299.89 -8.05 -41.90 By element: Atomic # 1 Polarization: -1.98 SS G_CDS: -3.47 Total: -5.45 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.39 Total: -1.26 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.17 Total: -55.20 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.51 Total: -1.57 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.85 -8.05 -41.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248873780.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.720 kcal (2) G-P(sol) polarization free energy of solvation -33.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds