Wall clock time and date at job start Tue Mar 31 2020 01:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86799 * 119.99945 * 2 1 4 4 H 1.48505 * 109.47299 * 270.00173 * 3 2 1 5 5 H 1.48501 * 109.47275 * 30.00471 * 3 2 1 6 6 H 1.48501 * 109.47006 * 150.00398 * 3 2 1 7 7 C 1.38956 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99687 * 359.97438 * 7 2 1 9 9 N 1.37099 * 119.99908 * 179.97438 * 7 2 1 10 10 C 1.34775 * 119.99644 * 180.02562 * 9 7 2 11 11 O 1.21296 * 120.00230 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99773 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.47147 * 179.97438 * 12 10 9 14 14 C 1.34228 * 117.00001 * 180.02562 * 13 12 10 15 15 O 1.20826 * 120.00094 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99603 * 180.02562 * 14 13 12 17 17 H 1.08992 * 109.47464 * 55.00024 * 16 14 13 18 18 O 1.42900 * 109.46724 * 174.99897 * 16 14 13 19 19 C 1.50701 * 109.46858 * 294.99266 * 16 14 13 20 20 C 1.38676 * 120.41222 * 100.00572 * 19 16 14 21 21 C 1.38628 * 118.41860 * 179.97438 * 20 19 16 22 22 C 1.38228 * 119.15845 * 0.02562 * 21 20 19 23 23 N 1.31856 * 120.76752 * 359.97438 * 22 21 20 24 24 C 1.31878 * 121.72141 * 359.70444 * 23 22 21 25 25 H 0.96997 * 120.00335 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00190 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.46980 * 59.99839 * 12 10 9 28 28 H 1.09004 * 109.47113 * 299.99819 * 12 10 9 29 29 H 0.96705 * 113.99901 * 59.99478 * 18 16 14 30 30 H 1.07997 * 120.79283 * 359.97438 * 20 19 16 31 31 H 1.07997 * 120.42262 * 180.02562 * 21 20 19 32 32 H 1.08007 * 119.61513 * 179.97438 * 22 21 20 33 33 H 1.08004 * 119.61695 * 180.30857 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0537 -2.3705 -0.0021 11 8 3.4473 -3.4210 -0.0021 12 6 5.5607 -2.3704 -0.0021 13 8 6.0448 -3.7394 -0.0027 14 6 7.3755 -3.9153 -0.0023 15 8 8.1115 -2.9571 -0.0019 16 6 7.9515 -5.3079 -0.0034 17 1 7.5461 -5.8681 -0.8460 18 8 9.3738 -5.2349 -0.1201 19 6 7.5881 -6.0028 1.2835 20 6 6.5345 -6.9038 1.3215 21 6 6.2365 -7.5197 2.5271 22 6 6.9936 -7.2171 3.6434 23 7 7.9885 -6.3550 3.5701 24 6 8.3043 -5.7551 2.4389 25 1 -0.4850 0.8400 0.0004 26 1 3.8648 -0.3633 -0.0014 27 1 5.9240 -1.8574 0.8883 28 1 5.9241 -1.8558 -0.8917 29 1 9.8029 -4.7491 0.5976 30 1 5.9600 -7.1204 0.4331 31 1 5.4231 -8.2271 2.5935 32 1 6.7675 -7.6924 4.5865 33 1 9.1292 -5.0583 2.4164 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257552528.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:19 Heat of formation + Delta-G solvation = -150.246091 kcal Electronic energy + Delta-G solvation = -21072.809952 eV Core-core repulsion = 17484.272873 eV Total energy + Delta-G solvation = -3588.537080 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.14833 -41.06297 -40.22132 -38.39421 -37.24888 -36.10534 -33.92506 -33.85882 -32.55728 -30.56687 -28.54200 -26.38674 -24.64848 -24.00769 -22.25908 -21.57436 -20.56549 -19.47868 -18.93968 -18.22024 -17.90897 -17.55591 -17.39779 -17.13566 -16.72557 -15.93691 -15.59766 -15.31911 -15.13558 -14.88848 -14.73021 -14.28390 -14.09137 -14.04861 -13.89942 -13.37212 -13.13172 -13.02033 -12.48308 -12.47177 -12.02400 -11.95309 -11.60693 -11.51763 -10.82635 -10.63049 -10.51253 -10.36044 -10.10079 -8.47784 -6.10965 -0.07042 0.24999 0.88513 1.20956 1.29282 1.31979 1.43054 1.72982 2.18429 2.63222 2.77174 3.06570 3.12574 3.24942 3.50395 3.58609 3.74713 3.85347 3.94038 4.04813 4.04899 4.08525 4.35559 4.52123 4.71295 5.07954 5.12403 5.16437 5.45129 5.64128 5.83224 6.21727 6.42575 6.51998 6.75065 6.89099 7.23399 7.74491 8.68718 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.023344 B = 0.003990 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.165278 B = 7016.574380 C = 7639.285440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.006 4.006 3 Si 0.959 3.041 4 H -0.254 1.254 5 H -0.272 1.272 6 H -0.233 1.233 7 C -0.334 4.334 8 H 0.062 0.938 9 N -0.576 5.576 10 C 0.448 3.552 11 O -0.605 6.605 12 C 0.065 3.935 13 O -0.336 6.336 14 C 0.436 3.564 15 O -0.516 6.516 16 C 0.186 3.814 17 H 0.169 0.831 18 O -0.524 6.524 19 C -0.186 4.186 20 C -0.054 4.054 21 C -0.171 4.171 22 C 0.096 3.904 23 N -0.508 5.508 24 C 0.100 3.900 25 H 0.282 0.718 26 H 0.392 0.608 27 H 0.112 0.888 28 H 0.119 0.881 29 H 0.396 0.604 30 H 0.157 0.843 31 H 0.165 0.835 32 H 0.183 0.817 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.664 -9.164 2.989 21.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.206 4.206 3 Si 0.779 3.221 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.156 1.156 7 C -0.462 4.462 8 H 0.080 0.920 9 N -0.218 5.218 10 C 0.235 3.765 11 O -0.490 6.490 12 C -0.012 4.012 13 O -0.251 6.251 14 C 0.279 3.721 15 O -0.405 6.405 16 C 0.124 3.876 17 H 0.186 0.814 18 O -0.331 6.331 19 C -0.188 4.188 20 C -0.079 4.079 21 C -0.190 4.190 22 C -0.060 4.060 23 N -0.217 5.217 24 C -0.057 4.057 25 H 0.092 0.908 26 H 0.228 0.772 27 H 0.130 0.870 28 H 0.136 0.864 29 H 0.248 0.752 30 H 0.175 0.825 31 H 0.183 0.817 32 H 0.200 0.800 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 18.634 -9.604 3.226 21.211 hybrid contribution -0.672 1.340 -0.251 1.520 sum 17.962 -8.265 2.975 19.995 Atomic orbital electron populations 1.69770 1.08053 1.29583 1.48981 1.26059 0.96424 1.02552 0.95545 0.85445 0.79543 0.76918 0.80198 1.17856 1.19678 1.15639 1.19006 0.80683 0.95368 1.51175 0.91972 1.41821 1.06161 1.07013 1.66785 1.20122 0.89216 0.84086 0.83049 1.90577 1.70849 1.32458 1.55080 1.22639 0.90881 0.81469 1.06190 1.86560 1.24493 1.31047 1.83019 1.25261 0.80531 0.94412 0.71918 1.90672 1.60594 1.43169 1.46067 1.20184 0.82479 0.86651 0.98296 0.81367 1.86698 1.14869 1.77767 1.53812 1.21086 1.00121 1.01322 0.96283 1.21848 0.93692 0.92259 1.00139 1.22531 1.01690 1.01758 0.93025 1.23386 0.89921 0.92733 0.99996 1.67747 1.17467 1.08767 1.27723 1.22776 0.98489 0.97071 0.87326 0.90787 0.77151 0.86966 0.86363 0.75210 0.82525 0.81713 0.79990 0.81433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.01 13.96 21.66 0.30 -53.71 16 2 C -0.01 -0.30 5.50 84.93 0.47 0.17 16 3 Si 0.96 37.45 27.74 68.60 1.90 39.35 16 4 H -0.25 -9.39 7.11 99.48 0.71 -8.69 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 6 H -0.23 -7.70 6.52 99.48 0.65 -7.06 16 7 C -0.33 -19.01 10.16 84.04 0.85 -18.16 16 8 H 0.06 4.20 7.39 -2.91 -0.02 4.18 16 9 N -0.58 -26.60 5.09 -306.98 -1.56 -28.16 16 10 C 0.45 20.18 7.86 87.66 0.69 20.87 16 11 O -0.61 -33.24 16.08 15.72 0.25 -32.99 16 12 C 0.07 2.13 5.94 71.24 0.42 2.55 16 13 O -0.34 -10.83 9.74 -45.04 -0.44 -11.27 16 14 C 0.44 11.43 7.26 71.24 0.52 11.94 16 15 O -0.52 -14.84 16.07 28.38 0.46 -14.39 16 16 C 0.19 3.59 3.75 29.10 0.11 3.70 16 17 H 0.17 2.58 8.03 -2.39 -0.02 2.57 16 18 O -0.52 -9.37 12.85 -129.95 -1.67 -11.04 16 19 C -0.19 -3.72 4.96 -19.77 -0.10 -3.82 16 20 C -0.05 -1.03 9.82 22.47 0.22 -0.81 16 21 C -0.17 -2.97 10.11 22.36 0.23 -2.74 16 22 C 0.10 1.79 11.18 84.69 0.95 2.73 16 23 N -0.51 -11.51 10.36 -195.84 -2.03 -13.54 16 24 C 0.10 2.06 10.49 84.67 0.89 2.95 16 25 H 0.28 15.02 8.31 -92.71 -0.77 14.25 16 26 H 0.39 14.90 5.76 -92.71 -0.53 14.37 16 27 H 0.11 3.15 8.13 -2.39 -0.02 3.13 16 28 H 0.12 3.22 8.13 -2.38 -0.02 3.20 16 29 H 0.40 5.09 7.27 -74.05 -0.54 4.55 16 30 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 31 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 32 H 0.18 2.28 8.06 -2.91 -0.02 2.25 16 33 H 0.17 2.62 6.79 -2.91 -0.02 2.60 16 Total: -1.00 -78.90 303.65 2.51 -76.39 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.05 Total: 29.97 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: 5.24 Total: 19.38 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -3.29 Total: -95.41 kcal Atomic # 8 Polarization: -68.29 SS G_CDS: -1.40 Total: -69.69 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 1.90 Total: 39.35 kcal Total: -78.90 2.51 -76.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257552528.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.854 kcal (2) G-P(sol) polarization free energy of solvation -78.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds