Wall clock time and date at job start Tue Mar 31 2020 01:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86793 * 119.99914 * 2 1 4 4 H 1.48498 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47350 * 300.00148 * 3 2 1 6 6 H 1.48495 * 109.47351 * 60.00108 * 3 2 1 7 7 C 1.38953 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99498 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99435 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00377 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99643 * 180.02562 * 10 9 7 13 13 O 1.45196 * 109.47016 * 180.02562 * 12 10 9 14 14 C 1.34234 * 116.99938 * 179.97438 * 13 12 10 15 15 O 1.20822 * 119.99973 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00068 * 179.97438 * 14 13 12 17 17 H 1.09005 * 109.46735 * 305.00005 * 16 14 13 18 18 O 1.42894 * 109.47254 * 185.00248 * 16 14 13 19 19 C 1.50695 * 109.47073 * 64.99663 * 16 14 13 20 20 C 1.38679 * 120.42420 * 264.72008 * 19 16 14 21 21 C 1.38624 * 118.42147 * 179.78453 * 20 19 16 22 22 C 1.38227 * 119.16063 * 0.51513 * 21 20 19 23 23 N 1.31849 * 120.76579 * 359.72655 * 22 21 20 24 24 C 1.31891 * 121.72486 * 359.97438 * 23 22 21 25 25 H 0.97005 * 120.00218 * 359.97438 * 1 2 3 26 26 H 0.96994 * 120.00293 * 0.02562 * 9 7 2 27 27 H 1.08996 * 109.46943 * 60.00331 * 12 10 9 28 28 H 1.08999 * 109.47285 * 300.00471 * 12 10 9 29 29 H 0.96699 * 113.99894 * 300.00089 * 18 16 14 30 30 H 1.08000 * 120.78305 * 0.02669 * 20 19 16 31 31 H 1.08006 * 120.41738 * 180.22374 * 21 20 19 32 32 H 1.08001 * 119.61649 * 179.74899 * 22 21 20 33 33 H 1.08001 * 119.61632 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0022 13 8 2.1873 -5.9666 -0.0027 14 6 1.6742 -7.2070 -0.0027 15 8 0.4764 -7.3653 -0.0028 16 6 2.5922 -8.4021 -0.0038 17 1 3.2804 -8.3309 -0.8461 18 8 1.8179 -9.5974 -0.1210 19 6 3.3754 -8.4351 1.2833 20 6 4.6467 -7.8846 1.3460 21 6 5.3282 -7.9338 2.5522 22 6 4.7266 -8.5352 3.6416 23 7 3.5179 -9.0530 3.5441 24 6 2.8380 -9.0190 2.4145 25 1 -0.4851 0.8401 0.0004 26 1 0.3534 -2.3907 -0.0005 27 1 0.6168 -4.9201 -0.8919 28 1 0.6173 -4.9213 0.8880 29 1 1.1825 -9.7263 0.5963 30 1 5.0935 -7.4250 0.4768 31 1 6.3187 -7.5118 2.6382 32 1 5.2525 -8.5813 4.5838 33 1 1.8503 -9.4540 2.3727 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257552537.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:22 Heat of formation + Delta-G solvation = -155.463618 kcal Electronic energy + Delta-G solvation = -21025.666038 eV Core-core repulsion = 17436.902709 eV Total energy + Delta-G solvation = -3588.763329 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.14071 -41.04466 -40.08793 -38.38296 -37.25154 -36.05174 -33.90625 -33.43370 -32.53516 -30.44075 -28.50152 -26.53078 -24.63220 -24.01910 -22.28633 -21.47359 -20.10472 -19.49770 -18.94619 -18.22230 -17.89657 -17.55944 -17.39057 -17.08152 -16.53922 -15.93449 -15.76068 -15.37191 -15.13380 -14.95163 -14.70762 -14.05736 -14.03502 -13.83918 -13.58402 -13.36647 -13.12232 -12.95542 -12.49414 -12.45892 -12.11386 -11.95418 -11.59883 -11.53885 -10.81485 -10.54017 -10.50640 -10.13579 -10.09397 -8.54068 -6.04795 -0.07018 0.25169 0.88758 1.23432 1.33680 1.43699 1.57892 1.84422 2.27698 2.67601 2.96075 3.10463 3.11661 3.24734 3.51618 3.59776 3.75540 3.92729 3.99418 4.05093 4.09954 4.18064 4.35276 4.52404 4.71532 5.08686 5.15212 5.16801 5.35833 5.64408 5.86806 6.21308 6.41975 6.51323 6.89328 7.01078 7.37579 7.90341 8.63181 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.023590 B = 0.003805 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.678988 B = 7356.522120 C = 8088.487230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.008 4.008 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.558 5.558 10 C 0.437 3.563 11 O -0.614 6.614 12 C 0.069 3.931 13 O -0.334 6.334 14 C 0.434 3.566 15 O -0.519 6.519 16 C 0.187 3.813 17 H 0.170 0.830 18 O -0.524 6.524 19 C -0.186 4.186 20 C -0.053 4.053 21 C -0.170 4.170 22 C 0.096 3.904 23 N -0.508 5.508 24 C 0.101 3.899 25 H 0.281 0.719 26 H 0.399 0.601 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.396 0.604 30 H 0.155 0.845 31 H 0.166 0.834 32 H 0.184 0.816 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.621 -16.110 3.087 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.209 4.209 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.196 5.196 10 C 0.224 3.776 11 O -0.501 6.501 12 C -0.008 4.008 13 O -0.249 6.249 14 C 0.277 3.723 15 O -0.408 6.408 16 C 0.125 3.875 17 H 0.187 0.813 18 O -0.332 6.332 19 C -0.189 4.189 20 C -0.079 4.079 21 C -0.189 4.189 22 C -0.060 4.060 23 N -0.217 5.217 24 C -0.056 4.056 25 H 0.090 0.910 26 H 0.234 0.766 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.248 0.752 30 H 0.173 0.827 31 H 0.183 0.817 32 H 0.201 0.799 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 5.875 -16.446 3.304 17.774 hybrid contribution -0.551 1.475 -0.263 1.597 sum 5.325 -14.971 3.041 16.178 Atomic orbital electron populations 1.69679 1.07008 1.29694 1.49213 1.26129 0.96552 1.02614 0.95614 0.84796 0.78126 0.76562 0.78412 1.19434 1.19477 1.19530 1.19765 0.92964 0.83305 1.50585 0.89636 1.41756 1.09557 1.04245 1.63993 1.20037 0.88113 0.85265 0.84224 1.90521 1.15228 1.87640 1.56682 1.22552 0.90280 0.82711 1.05251 1.86547 1.40626 1.14752 1.82948 1.25336 0.89623 0.85477 0.71896 1.90672 1.17391 1.86633 1.46138 1.20185 0.89370 0.79555 0.98406 0.81283 1.86689 1.55560 1.37048 1.53867 1.21082 0.97335 1.04007 0.96469 1.21827 0.92805 0.93377 0.99907 1.22527 1.03039 1.00286 0.93093 1.23395 0.90622 0.91955 1.00011 1.67756 1.09049 1.18235 1.26634 1.22774 1.00049 0.95357 0.87424 0.90966 0.76636 0.87445 0.87940 0.75211 0.82693 0.81661 0.79883 0.81392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.15 13.05 21.66 0.28 -47.87 16 2 C -0.01 -0.43 5.50 84.93 0.47 0.03 16 3 Si 1.00 41.38 29.55 68.60 2.03 43.41 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 6 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.34 -18.62 9.68 84.04 0.81 -17.81 16 8 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 9 N -0.56 -28.16 5.29 -306.97 -1.62 -29.78 16 10 C 0.44 20.81 7.86 87.66 0.69 21.49 16 11 O -0.61 -33.73 16.08 15.72 0.25 -33.47 16 12 C 0.07 2.53 5.94 71.24 0.42 2.96 16 13 O -0.33 -11.54 9.74 -45.11 -0.44 -11.98 16 14 C 0.43 12.39 7.26 71.24 0.52 12.91 16 15 O -0.52 -16.54 16.07 28.39 0.46 -16.09 16 16 C 0.19 3.88 3.75 29.10 0.11 3.99 16 17 H 0.17 2.81 8.06 -2.38 -0.02 2.79 16 18 O -0.52 -10.11 12.80 -129.95 -1.66 -11.78 16 19 C -0.19 -3.94 4.99 -19.77 -0.10 -4.04 16 20 C -0.05 -1.08 9.84 22.47 0.22 -0.86 16 21 C -0.17 -3.04 10.11 22.36 0.23 -2.81 16 22 C 0.10 1.83 11.18 84.69 0.95 2.77 16 23 N -0.51 -11.76 10.36 -195.84 -2.03 -13.79 16 24 C 0.10 2.15 10.50 84.67 0.89 3.04 16 25 H 0.28 13.73 8.31 -92.70 -0.77 12.96 16 26 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 27 H 0.11 3.52 8.13 -2.39 -0.02 3.50 16 28 H 0.10 3.42 8.13 -2.39 -0.02 3.40 16 29 H 0.40 5.68 7.17 -74.06 -0.53 5.15 16 30 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 31 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.18 2.31 8.06 -2.91 -0.02 2.28 16 33 H 0.17 2.77 6.63 -2.91 -0.02 2.75 16 Total: -1.00 -71.76 306.55 2.39 -69.38 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: -0.08 Total: 30.28 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: 5.20 Total: 21.69 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -3.37 Total: -91.44 kcal Atomic # 8 Polarization: -71.93 SS G_CDS: -1.39 Total: -73.32 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -71.76 2.39 -69.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257552537.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.088 kcal (2) G-P(sol) polarization free energy of solvation -71.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds