Wall clock time and date at job start Tue Mar 31 2020 01:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86807 * 119.99881 * 2 1 4 4 H 1.48501 * 109.46908 * 240.00179 * 3 2 1 5 5 H 1.48501 * 109.47026 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46901 * 119.99534 * 3 2 1 7 7 C 1.38939 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00078 * 180.02562 * 7 2 1 9 9 N 1.37106 * 120.00167 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99976 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00239 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99567 * 180.02562 * 10 9 7 13 13 O 1.45205 * 109.46781 * 179.97438 * 12 10 9 14 14 C 1.34233 * 116.99746 * 179.97438 * 13 12 10 15 15 O 1.20819 * 119.99866 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99663 * 180.02562 * 14 13 12 17 17 N 1.46507 * 109.47098 * 180.02562 * 16 14 13 18 18 C 1.35763 * 119.62574 * 89.99849 * 17 16 14 19 19 C 1.35346 * 120.69997 * 180.27933 * 18 17 16 20 20 C 1.40202 * 119.94860 * 359.43664 * 19 18 17 21 21 C 1.36395 * 119.26120 * 0.57668 * 20 19 18 22 22 C 1.34664 * 119.61981 * 270.02248 * 17 16 14 23 23 O 1.22055 * 119.98569 * 359.97438 * 22 17 16 24 24 H 0.97005 * 120.00189 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99734 * 0.02562 * 9 7 2 26 26 H 1.09004 * 109.47235 * 59.99935 * 12 10 9 27 27 H 1.08995 * 109.47086 * 299.99658 * 12 10 9 28 28 H 1.08991 * 109.47470 * 60.00363 * 16 14 13 29 29 H 1.09001 * 109.47078 * 299.99911 * 16 14 13 30 30 H 1.08002 * 119.64669 * 359.97438 * 18 17 16 31 31 H 1.07996 * 120.02410 * 179.69320 * 19 18 17 32 32 H 1.08002 * 120.36615 * 180.31976 * 20 19 18 33 33 H 1.08002 * 120.34395 * 179.74309 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0088 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0026 11 8 3.2102 -3.5578 0.0022 12 6 1.2438 -4.8629 0.0032 13 8 2.1874 -5.9665 0.0037 14 6 1.6743 -7.2069 0.0048 15 8 0.4766 -7.3652 0.0049 16 6 2.5924 -8.4020 0.0060 17 7 1.7945 -9.6307 0.0064 18 6 1.4295 -10.1943 -1.1735 19 6 0.6878 -11.3262 -1.1985 20 6 0.2988 -11.9347 0.0031 21 6 0.6661 -11.3668 1.1875 22 6 1.4312 -10.1879 1.1773 23 8 1.7671 -9.6694 2.2299 24 1 -0.4851 0.8401 -0.0004 25 1 0.3533 -2.3907 0.0016 26 1 0.6174 -4.9212 -0.8870 27 1 0.6168 -4.9200 0.8930 28 1 3.2211 -8.3763 0.8959 29 1 3.2213 -8.3779 -0.8840 30 1 1.7301 -9.7318 -2.1021 31 1 0.3994 -11.7625 -2.1434 32 1 -0.2887 -12.8409 -0.0090 33 1 0.3725 -11.8185 2.1236 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321639632.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:30 Heat of formation + Delta-G solvation = -110.881492 kcal Electronic energy + Delta-G solvation = -20736.742143 eV Core-core repulsion = 17149.912041 eV Total energy + Delta-G solvation = -3586.830103 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.76202 -40.18418 -38.17971 -37.12716 -36.29733 -34.83048 -34.03366 -31.41989 -30.28447 -29.57343 -27.88389 -24.73382 -24.18887 -23.22227 -21.19698 -19.63798 -18.17440 -18.02710 -17.86102 -17.61595 -16.70114 -16.44574 -16.27739 -15.80909 -15.08769 -14.82172 -14.48005 -14.42961 -14.26460 -13.93715 -13.02949 -12.99144 -12.64370 -12.30083 -12.24087 -12.06551 -12.03405 -11.64039 -11.13217 -10.93710 -10.52082 -10.50529 -10.35792 -10.28438 -10.17831 -9.62095 -8.56761 -8.26178 -8.11080 -6.52075 -3.94482 0.53209 1.64009 2.00928 2.09208 2.72604 3.13998 3.21682 3.26029 3.46944 3.70209 4.07962 4.22866 4.30957 4.47762 4.59093 4.77809 4.92433 4.97556 5.00955 5.07980 5.12500 5.45102 5.63651 5.64699 5.76228 5.99184 6.00280 6.20182 6.46432 6.76017 7.45508 7.63749 7.79250 7.91412 8.45343 9.04370 9.36159 9.85755 10.65006 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.048791 B = 0.002903 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.737923 B = 9642.312353 C = 9708.687738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.551 5.551 10 C 0.438 3.562 11 O -0.576 6.576 12 C 0.062 3.938 13 O -0.320 6.320 14 C 0.446 3.554 15 O -0.502 6.502 16 C 0.100 3.900 17 N -0.485 5.485 18 C 0.140 3.860 19 C -0.231 4.231 20 C -0.016 4.016 21 C -0.240 4.240 22 C 0.518 3.482 23 O -0.546 6.546 24 H 0.275 0.725 25 H 0.395 0.605 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.145 0.855 29 H 0.138 0.862 30 H 0.163 0.837 31 H 0.147 0.853 32 H 0.135 0.865 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.196 -21.738 -4.783 22.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.762 3.238 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.188 5.188 10 C 0.222 3.778 11 O -0.460 6.460 12 C -0.015 4.015 13 O -0.234 6.234 14 C 0.287 3.713 15 O -0.390 6.390 16 C -0.023 4.023 17 N -0.197 5.197 18 C 0.014 3.986 19 C -0.254 4.254 20 C -0.037 4.037 21 C -0.262 4.262 22 C 0.320 3.680 23 O -0.427 6.427 24 H 0.085 0.915 25 H 0.229 0.771 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.162 0.838 29 H 0.156 0.844 30 H 0.181 0.819 31 H 0.164 0.836 32 H 0.153 0.847 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.352 -21.195 -4.084 21.587 hybrid contribution -0.602 0.874 -0.116 1.067 sum -0.249 -20.321 -4.200 20.752 Atomic orbital electron populations 1.69606 1.06024 1.28658 1.49438 1.25320 0.95691 0.99904 0.96785 0.85847 0.78754 0.80003 0.79223 1.19729 1.20844 1.19704 1.19685 0.93474 0.81724 1.48406 0.87614 1.41697 1.09385 1.04066 1.63671 1.19263 0.88322 0.83999 0.86177 1.90562 1.13351 1.86741 1.55351 1.22807 0.90770 0.84330 1.03636 1.86518 1.40382 1.13782 1.82706 1.23686 0.88779 0.85451 0.73384 1.90702 1.16502 1.86712 1.45081 1.21323 0.92346 0.79377 1.09278 1.45165 1.45152 1.21834 1.07570 1.21990 0.93765 0.93631 0.89213 1.20650 1.06257 0.98783 0.99690 1.21456 0.92829 0.97493 0.91925 1.22100 1.06009 0.97781 1.00272 1.17221 0.81930 0.86307 0.82522 1.90994 1.57164 1.65046 1.29507 0.91523 0.77137 0.89429 0.89399 0.83757 0.84402 0.81947 0.83564 0.84700 0.83316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.06 13.05 55.49 0.72 -23.34 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.94 20.67 29.55 -169.99 -5.02 15.64 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 8 H 0.11 3.03 7.16 -52.48 -0.38 2.65 16 9 N -0.55 -13.94 5.29 -10.96 -0.06 -14.00 16 10 C 0.44 10.53 7.86 -10.99 -0.09 10.45 16 11 O -0.58 -15.91 16.08 -14.11 -0.23 -16.13 16 12 C 0.06 1.18 5.94 36.01 0.21 1.40 16 13 O -0.32 -5.82 9.76 -45.91 -0.45 -6.26 16 14 C 0.45 6.88 8.02 36.00 0.29 7.17 16 15 O -0.50 -8.90 16.18 -18.74 -0.30 -9.21 16 16 C 0.10 1.08 5.92 -5.19 -0.03 1.05 16 17 N -0.49 -5.34 2.07 -121.07 -0.25 -5.59 16 18 C 0.14 1.06 10.28 -16.84 -0.17 0.89 16 19 C -0.23 -1.50 10.01 -39.88 -0.40 -1.90 16 20 C -0.02 -0.11 10.10 -39.51 -0.40 -0.51 16 21 C -0.24 -2.51 9.99 -39.38 -0.39 -2.90 16 22 C 0.52 7.09 7.40 -15.44 -0.11 6.98 16 23 O -0.55 -9.67 16.64 4.87 0.08 -9.59 16 24 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 26 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 27 H 0.09 1.59 8.13 -51.93 -0.42 1.16 16 28 H 0.14 1.60 7.39 -51.93 -0.38 1.21 16 29 H 0.14 0.87 8.01 -51.93 -0.42 0.45 16 30 H 0.16 0.68 8.04 -52.49 -0.42 0.25 16 31 H 0.15 0.53 8.06 -52.49 -0.42 0.10 16 32 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 307.89 15.07 4.64 4.64 Total: -1.00 -36.80 307.89 -5.37 -42.17 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -3.17 Total: 6.99 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: -1.33 Total: 14.67 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.42 Total: -42.93 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -0.90 Total: -41.19 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -36.80 -5.37 -42.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321639632.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.714 kcal (2) G-P(sol) polarization free energy of solvation -36.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds