Wall clock time and date at job start Tue Mar 31 2020 01:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86807 * 119.99881 * 2 1 4 4 H 1.48501 * 109.46908 * 240.00179 * 3 2 1 5 5 H 1.48501 * 109.47026 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46901 * 119.99534 * 3 2 1 7 7 C 1.38939 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00078 * 180.02562 * 7 2 1 9 9 N 1.37106 * 120.00167 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99976 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00239 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99567 * 180.02562 * 10 9 7 13 13 O 1.45205 * 109.46781 * 179.97438 * 12 10 9 14 14 C 1.34233 * 116.99746 * 179.97438 * 13 12 10 15 15 O 1.20819 * 119.99866 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99663 * 180.02562 * 14 13 12 17 17 N 1.46507 * 109.47098 * 180.02562 * 16 14 13 18 18 C 1.35763 * 119.62574 * 89.99849 * 17 16 14 19 19 C 1.35346 * 120.69997 * 180.27933 * 18 17 16 20 20 C 1.40202 * 119.94860 * 359.43664 * 19 18 17 21 21 C 1.36395 * 119.26120 * 0.57668 * 20 19 18 22 22 C 1.34664 * 119.61981 * 270.02248 * 17 16 14 23 23 O 1.22055 * 119.98569 * 359.97438 * 22 17 16 24 24 H 0.97005 * 120.00189 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99734 * 0.02562 * 9 7 2 26 26 H 1.09004 * 109.47235 * 59.99935 * 12 10 9 27 27 H 1.08995 * 109.47086 * 299.99658 * 12 10 9 28 28 H 1.08991 * 109.47470 * 60.00363 * 16 14 13 29 29 H 1.09001 * 109.47078 * 299.99911 * 16 14 13 30 30 H 1.08002 * 119.64669 * 359.97438 * 18 17 16 31 31 H 1.07996 * 120.02410 * 179.69320 * 19 18 17 32 32 H 1.08002 * 120.36615 * 180.31976 * 20 19 18 33 33 H 1.08002 * 120.34395 * 179.74309 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0088 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0026 11 8 3.2102 -3.5578 0.0022 12 6 1.2438 -4.8629 0.0032 13 8 2.1874 -5.9665 0.0037 14 6 1.6743 -7.2069 0.0048 15 8 0.4766 -7.3652 0.0049 16 6 2.5924 -8.4020 0.0060 17 7 1.7945 -9.6307 0.0064 18 6 1.4295 -10.1943 -1.1735 19 6 0.6878 -11.3262 -1.1985 20 6 0.2988 -11.9347 0.0031 21 6 0.6661 -11.3668 1.1875 22 6 1.4312 -10.1879 1.1773 23 8 1.7671 -9.6694 2.2299 24 1 -0.4851 0.8401 -0.0004 25 1 0.3533 -2.3907 0.0016 26 1 0.6174 -4.9212 -0.8870 27 1 0.6168 -4.9200 0.8930 28 1 3.2211 -8.3763 0.8959 29 1 3.2213 -8.3779 -0.8840 30 1 1.7301 -9.7318 -2.1021 31 1 0.3994 -11.7625 -2.1434 32 1 -0.2887 -12.8409 -0.0090 33 1 0.3725 -11.8185 2.1236 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321639632.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:30 Heat of formation + Delta-G solvation = -136.682909 kcal Electronic energy + Delta-G solvation = -20737.860977 eV Core-core repulsion = 17149.912041 eV Total energy + Delta-G solvation = -3587.948936 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.65883 -41.46013 -40.05405 -38.06995 -37.66961 -36.06745 -35.62260 -33.45285 -31.11910 -30.67850 -29.24189 -26.60701 -24.93999 -24.11546 -22.35187 -21.49183 -20.11778 -19.27804 -18.81725 -18.45353 -17.82884 -17.74731 -17.46284 -17.21466 -16.63359 -16.05211 -15.90625 -15.75612 -15.43791 -15.11265 -14.66802 -14.31236 -13.72154 -13.57209 -13.52456 -13.26201 -13.05168 -12.94775 -12.75533 -12.51105 -12.14203 -12.02441 -11.98597 -11.59558 -11.22252 -11.08980 -10.55818 -10.14954 -9.02588 -8.54513 -6.05713 -0.14841 0.86088 0.90399 1.03954 1.36145 1.42082 1.53120 1.71125 1.83593 2.27488 2.66240 2.97757 3.10797 3.46934 3.61013 3.74273 3.95939 3.98983 4.08039 4.11979 4.16299 4.19065 4.35093 4.51217 4.98827 5.13906 5.17156 5.34618 5.38312 5.63067 5.85693 5.99695 6.35884 6.47578 6.89879 6.99808 7.36102 7.89104 8.62274 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.048791 B = 0.002903 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.737923 B = 9642.312353 C = 9708.687738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.008 4.008 3 Si 0.999 3.001 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.340 4.340 8 H 0.086 0.914 9 N -0.557 5.557 10 C 0.436 3.564 11 O -0.616 6.616 12 C 0.073 3.927 13 O -0.336 6.336 14 C 0.448 3.552 15 O -0.527 6.527 16 C 0.104 3.896 17 N -0.486 5.486 18 C 0.128 3.872 19 C -0.223 4.223 20 C 0.011 3.989 21 C -0.281 4.281 22 C 0.497 3.503 23 O -0.611 6.611 24 H 0.281 0.719 25 H 0.400 0.600 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.138 0.862 29 H 0.191 0.809 30 H 0.203 0.797 31 H 0.187 0.813 32 H 0.172 0.828 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.678 -22.886 -6.998 23.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.821 3.179 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.469 4.469 8 H 0.104 0.896 9 N -0.194 5.194 10 C 0.223 3.777 11 O -0.503 6.503 12 C -0.004 4.004 13 O -0.250 6.250 14 C 0.290 3.710 15 O -0.416 6.416 16 C -0.019 4.019 17 N -0.197 5.197 18 C 0.003 3.997 19 C -0.245 4.245 20 C -0.011 4.011 21 C -0.303 4.303 22 C 0.302 3.698 23 O -0.498 6.498 24 H 0.091 0.909 25 H 0.234 0.766 26 H 0.131 0.869 27 H 0.116 0.884 28 H 0.156 0.844 29 H 0.208 0.792 30 H 0.219 0.781 31 H 0.204 0.796 32 H 0.189 0.811 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.166 -22.381 -6.345 23.264 hybrid contribution -0.512 1.099 0.465 1.299 sum -0.678 -21.282 -5.880 22.090 Atomic orbital electron populations 1.69668 1.07014 1.29874 1.48994 1.26148 0.96584 1.02662 0.95528 0.84904 0.77746 0.75997 0.79205 1.19235 1.19381 1.19578 1.19709 0.93009 0.83320 1.50845 0.89618 1.41742 1.09562 1.04209 1.63898 1.20026 0.88079 0.85280 0.84323 1.90526 1.15308 1.87643 1.56790 1.22535 0.90141 0.82494 1.05266 1.86523 1.40604 1.14638 1.83248 1.24561 0.89201 0.85235 0.71954 1.90683 1.17834 1.86778 1.46350 1.21575 0.91495 0.77390 1.11403 1.45208 1.44888 1.21496 1.08118 1.22817 0.93593 0.94130 0.89127 1.21246 1.04461 0.97903 1.00886 1.21938 0.90582 0.97661 0.90922 1.22111 1.08183 0.98055 1.01901 1.17776 0.82235 0.87210 0.82559 1.90939 1.60200 1.67044 1.31663 0.90903 0.76595 0.86942 0.88438 0.84449 0.79216 0.78054 0.79569 0.81074 0.83595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.75 13.05 21.66 0.28 -48.47 16 2 C -0.01 -0.44 5.50 84.92 0.47 0.03 16 3 Si 1.00 41.94 29.55 68.60 2.03 43.97 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.34 -19.09 9.68 84.04 0.81 -18.27 16 8 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16 9 N -0.56 -28.67 5.29 -306.99 -1.62 -30.29 16 10 C 0.44 21.34 7.86 87.66 0.69 22.03 16 11 O -0.62 -34.84 16.08 15.75 0.25 -34.58 16 12 C 0.07 2.76 5.94 71.24 0.42 3.19 16 13 O -0.34 -12.08 9.76 -45.10 -0.44 -12.52 16 14 C 0.45 13.46 8.02 71.23 0.57 14.04 16 15 O -0.53 -18.35 16.18 21.98 0.36 -18.00 16 16 C 0.10 2.12 5.92 85.63 0.51 2.63 16 17 N -0.49 -10.04 2.07 -655.07 -1.36 -11.40 16 18 C 0.13 1.47 10.28 83.42 0.86 2.33 16 19 C -0.22 -1.91 10.01 22.08 0.22 -1.69 16 20 C 0.01 0.12 10.10 22.32 0.23 0.35 16 21 C -0.28 -5.83 9.99 22.40 0.22 -5.61 16 22 C 0.50 13.92 7.40 84.82 0.63 14.54 16 23 O -0.61 -23.18 16.64 -5.49 -0.09 -23.27 16 24 H 0.28 13.99 8.31 -92.70 -0.77 13.22 16 25 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 26 H 0.11 3.69 8.13 -2.39 -0.02 3.67 16 27 H 0.10 3.51 8.13 -2.39 -0.02 3.49 16 28 H 0.14 3.09 7.39 -2.39 -0.02 3.07 16 29 H 0.19 1.76 8.01 -2.39 -0.02 1.74 16 30 H 0.20 0.63 8.04 -2.91 -0.02 0.61 16 31 H 0.19 0.16 8.06 -2.91 -0.02 0.14 16 32 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 33 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -84.01 307.89 5.46 -78.54 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.43 Total: 22.46 kcal Atomic # 6 Polarization: 27.93 SS G_CDS: 5.63 Total: 33.55 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: -2.70 Total: -90.16 kcal Atomic # 8 Polarization: -88.44 SS G_CDS: 0.08 Total: -88.36 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -84.01 5.46 -78.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321639632.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.139 kcal (2) G-P(sol) polarization free energy of solvation -84.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds