Wall clock time and date at job start Tue Mar 31 2020 02:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38349 * 127.15068 * 2 1 4 4 C 1.39776 * 126.56574 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78312 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.77562 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87112 * 179.74281 * 3 2 1 13 13 N 1.28516 * 109.74302 * 0.24028 * 12 3 2 14 14 C 1.32388 * 110.20609 * 0.02562 * 13 12 3 15 15 S 1.76202 * 126.26021 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99784 * 359.97438 * 15 14 13 17 17 C 1.53001 * 109.47218 * 179.97438 * 16 15 14 18 18 N 1.46497 * 109.47342 * 179.97438 * 17 16 15 19 19 C 1.34431 * 126.82036 * 125.00285 * 18 17 16 20 20 N 1.30835 * 108.07530 * 179.97438 * 19 18 17 21 21 C 1.33249 * 109.83012 * 359.97438 * 20 19 18 22 22 N 1.30711 * 108.94263 * 359.75802 * 21 20 19 23 23 H 1.08991 * 109.47295 * 89.99934 * 1 2 3 24 24 H 1.08996 * 109.46934 * 210.00007 * 1 2 3 25 25 H 1.09000 * 109.46691 * 329.99366 * 1 2 3 26 26 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 27 27 H 1.09003 * 109.47327 * 299.99328 * 16 15 14 28 28 H 1.08993 * 109.47535 * 59.99722 * 16 15 14 29 29 H 1.09007 * 109.46999 * 300.00013 * 17 16 15 30 30 H 1.09006 * 109.47297 * 59.99693 * 17 16 15 31 31 H 1.08002 * 125.96702 * 359.97438 * 19 18 17 32 32 H 1.07991 * 125.52653 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8640 2.7018 0.0952 6 6 2.8708 3.4552 -0.1217 7 7 2.5140 4.7111 -0.0402 8 14 4.6632 3.0096 -0.4011 9 1 5.4729 4.2509 -0.4958 10 1 5.1511 2.1853 0.7337 11 1 4.7906 2.2385 -1.6638 12 7 3.5490 0.6414 0.0057 13 7 3.5370 -0.6437 0.0041 14 6 2.2904 -1.0893 -0.0033 15 16 1.7873 -2.7780 -0.0075 16 6 3.4059 -3.5881 0.0002 17 6 3.2164 -5.1063 -0.0015 18 7 4.5264 -5.7620 0.0040 19 6 4.9665 -6.6752 0.8870 20 7 6.1837 -7.0142 0.5476 21 6 6.5530 -6.3422 -0.5421 22 7 5.5695 -5.5666 -0.9158 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.5753 4.9451 0.0298 27 1 3.9654 -3.2905 -0.8867 28 1 3.9562 -3.2921 0.8932 29 1 2.6570 -5.4037 0.8856 30 1 2.6659 -5.4028 -0.8945 31 1 4.4121 -7.0615 1.7296 32 1 7.5081 -6.4280 -1.0387 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322446490.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:12 Heat of formation + Delta-G solvation = 128.392077 kcal Electronic energy + Delta-G solvation = -18512.296408 eV Core-core repulsion = 15443.180360 eV Total energy + Delta-G solvation = -3069.116049 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.080 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.97971 -42.89078 -36.15606 -35.96026 -35.41503 -32.19509 -32.08497 -31.30274 -28.47017 -27.34622 -25.40749 -23.40772 -22.91057 -22.56348 -21.93930 -20.23603 -18.45594 -18.37366 -17.14196 -17.01448 -16.72957 -16.07643 -15.89854 -15.71014 -15.47839 -15.03373 -14.82771 -14.41940 -14.22610 -13.93668 -13.56481 -13.31914 -13.13184 -12.90909 -12.45902 -12.04156 -11.84358 -11.58199 -11.45293 -11.00828 -10.95570 -10.81635 -10.71032 -10.60920 -10.41112 -9.52369 -8.74810 -6.90406 0.08564 0.71315 0.93196 0.94794 1.49951 1.55435 1.56663 1.89676 2.02158 2.08320 2.18106 2.37811 3.00753 3.34814 3.54095 3.64915 3.92014 3.96487 4.13985 4.23376 4.33708 4.44899 4.55033 4.55408 4.64918 4.78244 5.18575 5.25409 5.34156 5.46415 5.65801 5.90455 5.97317 6.35411 6.53360 7.11573 7.89415 8.11109 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.025799 B = 0.004166 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.055928 B = 6719.840860 C = 7672.429861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.514 5.514 3 C 0.326 3.674 4 C -0.508 4.508 5 H 0.087 0.913 6 C 0.044 3.956 7 N -0.821 5.821 8 Si 1.143 2.857 9 H -0.296 1.296 10 H -0.280 1.280 11 H -0.297 1.297 12 N -0.451 5.451 13 N -0.314 5.314 14 C 0.074 3.926 15 S 0.051 5.949 16 C -0.113 4.113 17 C 0.153 3.847 18 N -0.383 5.383 19 C 0.267 3.733 20 N -0.578 5.578 21 C 0.192 3.808 22 N -0.357 5.357 23 H 0.079 0.921 24 H 0.104 0.896 25 H 0.082 0.918 26 H 0.288 0.712 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.156 0.844 30 H 0.113 0.887 31 H 0.267 0.733 32 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.932 -20.617 1.815 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.214 5.214 3 C 0.079 3.921 4 C -0.549 4.549 5 H 0.105 0.895 6 C -0.176 4.176 7 N -0.446 5.446 8 Si 0.973 3.027 9 H -0.225 1.225 10 H -0.207 1.207 11 H -0.225 1.225 12 N -0.300 5.300 13 N -0.156 5.156 14 C -0.301 4.301 15 S 0.277 5.723 16 C -0.263 4.263 17 C 0.030 3.970 18 N -0.175 5.175 19 C -0.029 4.029 20 N -0.306 5.306 21 C -0.110 4.110 22 N -0.185 5.185 23 H 0.098 0.902 24 H 0.123 0.877 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.174 0.826 30 H 0.131 0.869 31 H 0.283 0.717 32 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -2.951 -20.140 1.235 20.393 hybrid contribution -1.887 0.715 0.159 2.024 sum -4.838 -19.425 1.394 20.067 Atomic orbital electron populations 1.21957 0.74355 1.04888 1.03892 1.46201 1.08490 1.03963 1.62765 1.21808 0.85663 0.90024 0.94615 1.19423 0.97559 0.87524 1.50408 0.89504 1.27660 1.09471 0.91565 0.88924 1.70658 1.21994 1.18401 1.33578 0.82219 0.69984 0.71803 0.78696 1.22461 1.20687 1.22505 1.73876 1.17284 1.02240 1.36560 1.74224 1.17449 1.04961 1.18990 1.26597 0.90266 0.96312 1.16908 1.83953 1.08244 0.85606 1.94536 1.23596 0.98148 0.98104 1.06487 1.21677 0.79517 0.87502 1.08315 1.50598 1.13640 1.32410 1.20827 1.27065 0.91537 0.88614 0.95703 1.70571 1.13221 1.30208 1.16624 1.26530 0.99937 0.91489 0.93083 1.78075 0.98438 1.25831 1.16160 0.90246 0.87741 0.89899 0.90091 0.90486 0.90037 0.82592 0.86900 0.71710 0.74742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.82 10.89 127.77 1.39 4.21 16 2 N -0.51 -22.53 3.26 -543.63 -1.77 -24.31 16 3 C 0.33 17.34 7.27 133.23 0.97 18.31 16 4 C -0.51 -27.34 9.50 23.09 0.22 -27.13 16 5 H 0.09 4.48 7.46 -2.91 -0.02 4.45 16 6 C 0.04 2.43 5.52 85.29 0.47 2.90 16 7 N -0.82 -44.18 13.65 21.86 0.30 -43.88 16 8 Si 1.14 59.00 25.90 68.60 1.78 60.77 16 9 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 10 H -0.28 -15.17 6.76 99.48 0.67 -14.50 16 11 H -0.30 -15.96 7.11 99.48 0.71 -15.26 16 12 N -0.45 -25.55 7.52 -55.02 -0.41 -25.96 16 13 N -0.31 -16.15 11.62 -56.17 -0.65 -16.80 16 14 C 0.07 3.16 8.09 179.18 1.45 4.61 16 15 S 0.05 1.37 21.79 -56.49 -1.23 0.14 16 16 C -0.11 -2.85 5.44 71.98 0.39 -2.46 16 17 C 0.15 2.26 6.55 86.38 0.57 2.82 16 18 N -0.38 -7.50 3.69 -352.04 -1.30 -8.80 16 19 C 0.27 4.18 12.63 180.36 2.28 6.46 16 20 N -0.58 -12.61 11.19 -204.00 -2.28 -14.89 16 21 C 0.19 4.36 13.03 180.76 2.36 6.71 16 22 N -0.36 -9.37 12.58 -61.25 -0.77 -10.14 16 23 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.10 2.51 7.85 -2.39 -0.02 2.49 16 25 H 0.08 2.55 7.48 -2.39 -0.02 2.53 16 26 H 0.29 14.64 8.72 -92.71 -0.81 13.83 16 27 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.08 2.37 8.14 -2.40 -0.02 2.35 16 29 H 0.16 0.90 8.09 -2.38 -0.02 0.88 16 30 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.27 1.05 8.06 -2.91 -0.02 1.02 16 32 H 0.24 3.77 8.06 -2.92 -0.02 3.74 16 Total: -1.00 -78.20 299.35 4.82 -73.38 By element: Atomic # 1 Polarization: -7.02 SS G_CDS: 1.07 Total: -5.95 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 10.09 Total: 16.44 kcal Atomic # 7 Polarization: -137.89 SS G_CDS: -6.89 Total: -144.78 kcal Atomic # 14 Polarization: 59.00 SS G_CDS: 1.78 Total: 60.77 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -1.23 Total: 0.14 kcal Total: -78.20 4.82 -73.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322446490.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.774 kcal (2) G-P(sol) polarization free energy of solvation -78.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds