Wall clock time and date at job start Tue Mar 31 2020 01:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99614 * 2 1 4 4 H 1.48502 * 109.47233 * 269.99815 * 3 2 1 5 5 H 1.48500 * 109.47028 * 30.00349 * 3 2 1 6 6 H 1.48508 * 109.46882 * 150.00059 * 3 2 1 7 7 C 1.38695 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99950 * 179.97438 * 7 2 1 9 9 O 1.34812 * 120.00269 * 0.02562 * 7 2 1 10 10 C 1.35513 * 117.00302 * 185.06410 * 9 7 2 11 11 C 1.38832 * 120.16293 * 354.39426 * 10 9 7 12 12 C 1.38027 * 120.07573 * 180.02562 * 11 10 9 13 13 C 1.38578 * 120.39985 * 359.97438 * 12 11 10 14 14 C 1.37825 * 120.32268 * 359.97438 * 13 12 11 15 15 C 1.39673 * 119.92200 * 0.02562 * 14 13 12 16 16 C 1.47528 * 120.19792 * 179.97438 * 15 14 13 17 17 O 1.21596 * 119.99970 * 180.02562 * 16 15 14 18 18 N 1.34779 * 119.99961 * 0.02562 * 16 15 14 19 19 O 1.41608 * 119.99584 * 179.97438 * 18 16 15 20 20 C 1.42896 * 113.99494 * 179.97438 * 19 18 16 21 21 C 1.50705 * 109.47180 * 179.97438 * 20 19 18 22 22 N 1.34774 * 120.00044 * 180.02562 * 21 20 19 23 23 O 1.21281 * 119.99897 * 0.02562 * 21 20 19 24 24 H 0.96994 * 120.00177 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.96395 * 0.02562 * 11 10 9 26 26 H 1.08000 * 119.80396 * 180.02562 * 12 11 10 27 27 H 1.07992 * 119.84019 * 180.02562 * 13 12 11 28 28 H 1.08002 * 120.04315 * 179.75153 * 14 13 12 29 29 H 0.96989 * 120.00225 * 359.97438 * 18 16 15 30 30 H 1.09003 * 109.47638 * 300.00114 * 20 19 18 31 31 H 1.09002 * 109.47354 * 60.00071 * 20 19 18 32 32 H 0.96996 * 120.00385 * 359.97438 * 22 21 20 33 33 H 0.97008 * 119.99429 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0087 -1.2011 0.0005 8 1 3.0888 -1.2010 0.0001 9 8 1.3348 -2.3687 0.0005 10 6 2.0688 -3.5027 0.1077 11 6 3.4556 -3.4400 0.0941 12 6 4.2015 -4.5963 0.2028 13 6 3.5747 -5.8260 0.3265 14 6 2.1989 -5.9073 0.3429 15 6 1.4310 -4.7457 0.2338 16 6 -0.0420 -4.8257 0.2501 17 8 -0.7070 -3.8123 0.1544 18 7 -0.6506 -6.0222 0.3709 19 8 -2.0645 -6.0989 0.3871 20 6 -2.5730 -7.4277 0.5197 21 6 -4.0795 -7.3909 0.5260 22 7 -4.7811 -8.5357 0.6425 23 8 -4.6606 -6.3310 0.4262 24 1 -0.4850 0.8400 0.0004 25 1 3.9514 -2.4854 -0.0016 26 1 5.2801 -4.5423 0.1922 27 1 4.1671 -6.7250 0.4114 28 1 1.7151 -6.8685 0.4355 29 1 -0.1202 -6.8307 0.4469 30 1 -2.2275 -8.0343 -0.3175 31 1 -2.2166 -7.8615 1.4541 32 1 -4.3165 -9.3834 0.7220 33 1 -5.7509 -8.5119 0.6462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324842584.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:34 Heat of formation + Delta-G solvation = -52.008743 kcal Electronic energy + Delta-G solvation = -21020.937738 eV Core-core repulsion = 17436.660550 eV Total energy + Delta-G solvation = -3584.277189 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.76853 -39.47481 -38.06915 -36.52567 -36.28010 -33.97844 -32.38631 -32.17171 -30.08170 -28.97569 -27.65037 -25.38898 -23.19116 -21.52135 -21.25420 -20.12483 -18.53952 -18.02971 -17.56947 -17.35895 -16.39298 -16.22370 -16.02190 -14.77925 -14.49646 -14.45960 -14.37590 -14.03150 -13.82560 -13.78681 -13.22371 -13.07603 -12.60396 -12.42693 -11.72350 -11.41173 -11.16899 -11.04379 -10.90263 -10.83768 -10.45668 -10.22053 -10.00565 -9.59534 -8.94018 -8.88719 -8.49339 -8.33443 -7.35876 -6.43912 -4.04999 1.65294 1.95005 2.26969 2.35896 3.12794 3.14376 3.19360 3.37469 3.72076 3.93477 4.51862 4.59595 4.76343 4.79121 4.85368 5.02806 5.14150 5.34099 5.44800 5.67023 5.96293 6.05896 6.45358 6.50174 6.61040 6.84267 6.92214 6.99979 7.15053 7.18929 7.26017 7.63365 7.84225 7.96029 7.98834 8.94048 9.08130 9.64402 10.69160 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.017258 B = 0.004587 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.006009 B = 6102.813305 C = 7706.046393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.045 3.955 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.405 4.405 8 H 0.096 0.904 9 O -0.121 6.121 10 C 0.190 3.810 11 C -0.234 4.234 12 C -0.049 4.049 13 C -0.230 4.230 14 C -0.039 4.039 15 C -0.217 4.217 16 C 0.565 3.435 17 O -0.474 6.474 18 N -0.611 5.611 19 O -0.118 6.118 20 C 0.011 3.989 21 C 0.523 3.477 22 N -0.853 5.853 23 O -0.509 6.509 24 H 0.273 0.727 25 H 0.134 0.866 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.398 0.602 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.402 0.598 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.072 -18.752 1.640 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.481 4.481 8 H 0.113 0.887 9 O -0.018 6.018 10 C 0.130 3.870 11 C -0.253 4.253 12 C -0.067 4.067 13 C -0.250 4.250 14 C -0.058 4.058 15 C -0.223 4.223 16 C 0.355 3.645 17 O -0.344 6.344 18 N -0.319 5.319 19 O -0.121 6.121 20 C -0.070 4.070 21 C 0.305 3.695 22 N -0.420 5.420 23 O -0.382 6.382 24 H 0.084 0.916 25 H 0.151 0.849 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.238 0.762 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.230 0.770 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -0.248 -16.684 1.447 16.748 hybrid contribution 0.535 -0.583 0.119 0.800 sum 0.287 -17.266 1.566 17.340 Atomic orbital electron populations 1.70134 1.06023 1.27992 1.41538 1.25433 0.95810 0.99076 0.96069 0.85704 0.78961 0.79856 0.78829 1.19689 1.20075 1.19002 1.21526 0.91940 0.80974 1.53656 0.88662 1.84175 1.33709 1.11118 1.72794 1.19172 0.89861 0.87156 0.90836 1.21148 0.93122 0.99474 1.11544 1.20914 0.98733 0.92255 0.94823 1.20439 0.93886 0.97221 1.13407 1.20736 0.94015 0.95138 0.95872 1.18436 0.89460 0.92592 1.21803 1.18320 0.87341 0.81451 0.77425 1.91004 1.64616 1.33139 1.45627 1.47779 0.92646 1.10057 1.81378 1.90787 1.03150 1.21561 1.96593 1.22574 0.92670 0.88478 1.03311 1.19954 0.88924 0.84286 0.76351 1.43633 1.11030 1.08793 1.78550 1.90879 1.71296 1.29673 1.46364 0.91638 0.84853 0.87024 0.87118 0.87155 0.76221 0.89225 0.89228 0.77027 0.76083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.48 13.67 55.48 0.76 -24.72 16 2 C 0.04 1.26 5.49 -17.52 -0.10 1.17 16 3 Si 0.94 20.64 29.55 -169.99 -5.02 15.62 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 7 C -0.41 -11.51 9.49 30.90 0.29 -11.22 16 8 H 0.10 2.42 5.21 -52.48 -0.27 2.15 16 9 O -0.12 -3.60 7.84 -21.03 -0.16 -3.76 16 10 C 0.19 4.70 6.66 -38.60 -0.26 4.44 16 11 C -0.23 -4.89 9.16 -39.44 -0.36 -5.25 16 12 C -0.05 -0.82 10.03 -39.53 -0.40 -1.22 16 13 C -0.23 -3.55 10.03 -39.61 -0.40 -3.95 16 14 C -0.04 -0.63 9.54 -39.20 -0.37 -1.00 16 15 C -0.22 -4.70 5.89 -104.81 -0.62 -5.31 16 16 C 0.56 13.17 7.91 -12.47 -0.10 13.07 16 17 O -0.47 -14.19 15.57 -24.39 -0.38 -14.57 16 18 N -0.61 -10.71 6.34 30.46 0.19 -10.52 16 19 O -0.12 -2.20 10.64 -40.34 -0.43 -2.63 16 20 C 0.01 0.12 6.71 36.01 0.24 0.36 16 21 C 0.52 6.42 8.18 -10.98 -0.09 6.33 16 22 N -0.85 -5.41 8.87 31.22 0.28 -5.13 16 23 O -0.51 -9.58 17.34 -14.35 -0.25 -9.83 16 24 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 25 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 26 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 27 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.11 1.28 6.40 -52.49 -0.34 0.95 16 29 H 0.40 4.83 6.57 -40.82 -0.27 4.56 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.40 0.96 8.83 -40.82 -0.36 0.60 16 33 H 0.41 2.27 8.93 -40.82 -0.36 1.90 16 LS Contribution 302.50 15.07 4.56 4.56 Total: -1.00 -41.77 302.50 -5.34 -47.10 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -2.72 Total: 6.46 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -2.15 Total: -2.58 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 1.23 Total: -40.37 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -1.22 Total: -30.79 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -41.77 -5.34 -47.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324842584.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.904 kcal (2) G-P(sol) polarization free energy of solvation -41.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds