Wall clock time and date at job start Tue Mar 31 2020 01:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00033 * 2 1 4 4 H 1.48498 * 109.47560 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47175 * 300.00118 * 3 2 1 6 6 H 1.48507 * 109.47166 * 59.99832 * 3 2 1 7 7 C 1.37882 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99569 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00196 * 0.02562 * 7 2 1 10 10 N 1.46490 * 109.47298 * 180.02562 * 9 7 2 11 11 C 1.34785 * 119.99993 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99703 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99729 * 179.97438 * 11 10 9 14 14 O 1.45205 * 109.46833 * 180.02562 * 13 11 10 15 15 C 1.34687 * 117.00136 * 179.97438 * 14 13 11 16 16 O 1.21432 * 119.99790 * 0.02562 * 15 14 13 17 17 C 1.48045 * 119.99845 * 179.97438 * 15 14 13 18 18 C 1.39215 * 119.69103 * 180.02562 * 17 15 14 19 19 C 1.38745 * 119.18055 * 179.97438 * 18 17 15 20 20 C 1.38366 * 118.55898 * 359.74841 * 19 18 17 21 21 C 1.39267 * 119.31564 * 0.50273 * 20 19 18 22 22 O 1.35664 * 119.61430 * 179.76866 * 21 20 19 23 23 N 1.31908 * 120.77267 * 359.48272 * 21 20 19 24 24 H 0.96998 * 120.00202 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47005 * 60.00047 * 9 7 2 26 26 H 1.09005 * 109.46917 * 300.00442 * 9 7 2 27 27 H 0.97001 * 120.00607 * 359.97438 * 10 9 7 28 28 H 1.08999 * 109.47631 * 60.00416 * 13 11 10 29 29 H 1.08996 * 109.47451 * 299.99733 * 13 11 10 30 30 H 1.07992 * 120.40417 * 359.96076 * 18 17 15 31 31 H 1.07998 * 120.71765 * 179.97438 * 19 18 17 32 32 H 1.08003 * 120.33756 * 180.26352 * 20 19 18 33 33 H 0.96700 * 114.00053 * 269.72175 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8834 0.0015 12 8 0.5617 -5.1050 0.0006 13 6 2.7333 -6.0287 0.0022 14 8 2.0074 -7.2862 0.0010 15 6 2.7409 -8.4158 0.0009 16 8 3.9536 -8.3522 0.0022 17 6 2.0688 -9.7349 0.0004 18 6 2.8333 -10.8983 0.0009 19 6 2.1924 -12.1289 0.0009 20 6 0.8090 -12.1542 0.0058 21 6 0.1050 -10.9526 -0.0001 22 8 -1.2515 -10.9704 0.0000 23 7 0.7417 -9.7974 0.0000 24 1 -0.4850 0.8400 -0.0004 25 1 0.6249 -2.5572 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 3.1569 -3.4354 0.0021 28 1 3.3594 -5.9710 0.8926 29 1 3.3606 -5.9710 -0.8874 30 1 3.9119 -10.8436 0.0009 31 1 2.7611 -13.0470 0.0008 32 1 0.2806 -13.0962 0.0103 33 1 -1.6448 -10.9755 -0.8834 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327789905.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:35 Heat of formation + Delta-G solvation = -149.664791 kcal Electronic energy + Delta-G solvation = -20270.474837 eV Core-core repulsion = 16681.962964 eV Total energy + Delta-G solvation = -3588.511873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.11502 -41.17138 -40.31729 -38.15458 -37.57030 -36.20574 -34.43461 -33.84174 -31.80249 -30.78282 -28.62540 -26.23900 -24.63864 -24.34121 -22.57949 -21.67991 -19.99320 -19.39464 -19.13074 -18.05879 -17.92369 -17.47448 -17.38984 -16.91926 -16.88816 -16.43524 -16.16999 -15.90583 -14.82263 -14.71828 -14.42871 -14.12954 -14.07566 -13.84517 -13.63413 -13.22882 -12.92006 -12.81477 -12.76207 -12.23236 -12.22485 -11.97159 -11.47897 -11.10927 -10.96118 -10.84156 -10.63384 -10.17162 -9.95142 -8.30390 -6.47280 -0.68762 0.04878 1.09693 1.15898 1.44005 1.44834 1.53203 1.58642 2.25745 2.38564 2.50599 2.66937 3.04851 3.32980 3.65099 3.77208 3.80398 3.96942 3.98803 4.02324 4.29118 4.45577 4.88472 4.92776 5.03890 5.09608 5.19924 5.37532 5.40606 5.61871 5.80776 6.23843 6.53648 6.61862 6.75527 6.80282 7.19487 7.34859 8.82196 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.038353 B = 0.002816 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.885571 B = 9939.752237 C =10646.655535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.088 0.912 9 C 0.266 3.734 10 N -0.697 5.697 11 C 0.498 3.502 12 O -0.584 6.584 13 C 0.057 3.943 14 O -0.334 6.334 15 C 0.521 3.479 16 O -0.505 6.505 17 C 0.085 3.915 18 C -0.105 4.105 19 C -0.051 4.051 20 C -0.134 4.134 21 C 0.291 3.709 22 O -0.493 6.493 23 N -0.504 5.504 24 H 0.269 0.731 25 H -0.009 1.009 26 H -0.009 1.009 27 H 0.414 0.586 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.172 0.828 31 H 0.202 0.798 32 H 0.188 0.812 33 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.792 -27.318 -1.809 28.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.593 4.593 8 H 0.106 0.894 9 C 0.143 3.857 10 N -0.349 5.349 11 C 0.284 3.716 12 O -0.464 6.464 13 C -0.020 4.020 14 O -0.248 6.248 15 C 0.364 3.636 16 O -0.393 6.393 17 C -0.050 4.050 18 C -0.125 4.125 19 C -0.076 4.076 20 C -0.155 4.155 21 C 0.109 3.891 22 O -0.303 6.303 23 N -0.227 5.227 24 H 0.078 0.922 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.250 0.750 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.190 0.810 31 H 0.219 0.781 32 H 0.205 0.795 33 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 7.702 -26.513 -1.219 27.636 hybrid contribution 0.327 0.834 -0.440 0.998 sum 8.028 -25.679 -1.659 26.956 Atomic orbital electron populations 1.70146 1.08330 1.28595 1.49922 1.26093 0.95789 1.03994 0.93825 0.85074 0.79107 0.77151 0.77642 1.17498 1.20461 1.20517 1.21638 0.94460 0.90257 1.52928 0.89440 1.18637 0.88618 0.83893 0.94503 1.46012 1.11739 1.04543 1.72563 1.20701 0.89276 0.84802 0.76864 1.90707 1.19101 1.85300 1.51329 1.22873 0.92629 0.78889 1.07591 1.86746 1.40626 1.14427 1.82983 1.21289 0.85165 0.84699 0.72411 1.90823 1.14072 1.87794 1.46618 1.19736 0.88663 0.91007 1.05597 1.22424 1.03142 0.90887 0.96094 1.22115 0.93635 0.98796 0.93043 1.22849 0.95653 0.99219 0.97741 1.19574 0.85276 0.87743 0.96518 1.84775 1.13937 1.95481 1.36149 1.66966 1.10682 1.32965 1.12068 0.92195 0.99060 0.99147 0.74989 0.85307 0.85160 0.81009 0.78068 0.79520 0.71717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 2 C 0.00 0.14 5.46 84.66 0.46 0.61 16 3 Si 0.99 42.42 29.54 68.60 2.03 44.45 16 4 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.56 -30.20 9.28 25.60 0.24 -29.96 16 8 H 0.09 4.26 7.60 -2.91 -0.02 4.24 16 9 C 0.27 14.78 5.43 85.63 0.46 15.24 16 10 N -0.70 -29.87 5.55 -466.81 -2.59 -32.46 16 11 C 0.50 21.28 7.91 87.65 0.69 21.98 16 12 O -0.58 -31.64 16.50 15.79 0.26 -31.38 16 13 C 0.06 1.77 5.95 71.23 0.42 2.19 16 14 O -0.33 -11.94 9.57 -49.57 -0.47 -12.41 16 15 C 0.52 15.49 7.95 70.42 0.56 16.05 16 16 O -0.50 -14.48 16.10 20.06 0.32 -14.16 16 17 C 0.09 2.14 6.74 41.83 0.28 2.43 16 18 C -0.11 -1.56 9.63 22.63 0.22 -1.35 16 19 C -0.05 -0.39 10.16 22.42 0.23 -0.16 16 20 C -0.13 -1.36 10.05 22.55 0.23 -1.13 16 21 C 0.29 5.90 7.74 84.93 0.66 6.55 16 22 O -0.49 -9.27 13.56 -89.80 -1.22 -10.49 16 23 N -0.50 -14.42 10.15 -298.24 -3.03 -17.44 16 24 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 25 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 26 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 27 H 0.41 14.12 8.32 -92.71 -0.77 13.34 16 28 H 0.13 3.26 8.14 -2.39 -0.02 3.24 16 29 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 30 H 0.17 1.93 7.63 -2.91 -0.02 1.91 16 31 H 0.20 -0.41 8.06 -2.91 -0.02 -0.43 16 32 H 0.19 0.47 8.06 -2.91 -0.02 0.45 16 33 H 0.42 3.71 9.06 -74.06 -0.67 3.04 16 Total: -1.00 -86.69 311.46 -0.22 -86.91 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -0.26 Total: 10.87 kcal Atomic # 6 Polarization: 28.00 SS G_CDS: 4.45 Total: 32.45 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -5.33 Total: -106.23 kcal Atomic # 8 Polarization: -67.34 SS G_CDS: -1.11 Total: -68.44 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -86.69 -0.22 -86.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327789905.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.754 kcal (2) G-P(sol) polarization free energy of solvation -86.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds