Wall clock time and date at job start Tue Mar 31 2020 01:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.20822 * 119.99840 * 120.00361 * 12 2 1 14 14 O 1.34228 * 120.00316 * 300.00594 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.46910 * 180.02562 * 15 14 12 17 17 S 1.81403 * 109.47248 * 180.02562 * 16 15 14 18 18 C 1.76195 * 103.00185 * 179.97438 * 17 16 15 19 19 C 1.38968 * 120.08019 * 359.72072 * 18 17 16 20 20 C 1.38084 * 119.91778 * 179.71977 * 19 18 17 21 21 C 1.38308 * 120.07890 * 0.53731 * 20 19 18 22 22 C 1.38297 * 120.16315 * 359.76102 * 21 20 19 23 23 C 1.38083 * 120.07705 * 359.96109 * 22 21 20 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 29 29 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 30 30 H 1.09006 * 109.47239 * 299.99741 * 16 15 14 31 31 H 1.08995 * 109.47984 * 59.99571 * 16 15 14 32 32 H 1.07995 * 120.04092 * 0.02562 * 19 18 17 33 33 H 1.07999 * 119.96371 * 180.27609 * 20 19 18 34 34 H 1.07998 * 119.91549 * 179.74114 * 21 20 19 35 35 H 1.07995 * 119.96510 * 179.97438 * 22 21 20 36 36 H 1.07998 * 120.03924 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6926 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2277 -0.9855 3.5897 16 6 1.7554 -0.3190 4.8834 17 16 2.4053 -1.2353 6.3078 18 6 1.7684 -0.3352 7.6821 19 6 0.9789 0.7891 7.4729 20 6 0.4768 1.4886 8.5524 21 6 0.7678 1.0779 9.8406 22 6 1.5582 -0.0369 10.0527 23 6 2.0591 -0.7447 8.9780 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7088 1.1611 -3.4845 28 1 1.8643 -2.0126 3.5570 29 1 3.3172 -0.9843 3.5566 30 1 2.1184 0.7083 4.9164 31 1 0.6660 -0.3205 4.9163 32 1 0.7544 1.1126 6.4673 33 1 -0.1405 2.3599 8.3906 34 1 0.3771 1.6294 10.6830 35 1 1.7838 -0.3546 11.0599 36 1 2.6759 -1.6154 9.1443 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330231631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:32 Heat of formation + Delta-G solvation = -73.068339 kcal Electronic energy + Delta-G solvation = -18274.258062 eV Core-core repulsion = 15235.360875 eV Total energy + Delta-G solvation = -3038.897187 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.64175 -39.17788 -36.02132 -33.92605 -32.16472 -31.26613 -31.10041 -30.40450 -25.24154 -24.40743 -23.07256 -22.87906 -22.04315 -19.92064 -18.03582 -16.92995 -16.48695 -16.20391 -16.07869 -15.62226 -15.28405 -14.82477 -14.42990 -14.29566 -13.76276 -13.69134 -13.29705 -12.79116 -12.74416 -12.19467 -11.90302 -11.68091 -11.50940 -11.36256 -11.06662 -10.82213 -10.74801 -10.43292 -10.37121 -10.15406 -10.08299 -10.01379 -9.28923 -9.18434 -9.08426 -8.47894 -7.64815 -6.13554 -4.19131 0.91368 1.06608 1.11165 2.13095 3.23829 3.29155 3.34537 3.39471 3.41649 3.57676 4.39193 4.55128 4.63486 4.69742 4.70110 4.81008 5.08582 5.18892 5.19936 5.28501 5.42959 5.58298 5.61414 5.67836 5.96892 6.07247 6.07897 6.19657 6.59313 6.62162 6.81829 6.83457 7.12628 7.39291 7.70681 7.91047 8.10239 8.77618 8.89995 9.46657 10.93879 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.047766 B = 0.002768 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.053237 B =10111.976617 C =10601.852175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 H 0.065 0.935 4 C -0.513 4.513 5 H 0.076 0.924 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.272 1.272 11 H -0.285 1.285 12 C 0.467 3.533 13 O -0.514 6.514 14 O -0.364 6.364 15 C 0.079 3.921 16 C -0.111 4.111 17 S -0.098 6.098 18 C -0.081 4.081 19 C -0.133 4.133 20 C -0.099 4.099 21 C -0.128 4.128 22 C -0.103 4.103 23 C -0.102 4.102 24 H 0.023 0.977 25 H 0.097 0.903 26 H 0.032 0.968 27 H 0.264 0.736 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.235 1.264 22.622 22.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 H 0.083 0.917 4 C -0.551 4.551 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.733 3.267 9 H -0.205 1.205 10 H -0.197 1.197 11 H -0.211 1.211 12 C 0.311 3.689 13 O -0.400 6.400 14 O -0.282 6.282 15 C 0.003 3.997 16 C -0.259 4.259 17 S 0.146 5.854 18 C -0.194 4.194 19 C -0.157 4.157 20 C -0.119 4.119 21 C -0.149 4.149 22 C -0.123 4.123 23 C -0.126 4.126 24 H 0.042 0.958 25 H 0.115 0.885 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.375 0.040 22.307 22.310 hybrid contribution -0.436 0.649 -0.676 1.034 sum -0.811 0.690 21.631 21.658 Atomic orbital electron populations 1.21742 0.95549 1.00112 1.01770 1.18783 0.94901 0.96991 0.85339 0.91736 1.21133 1.31967 1.13303 0.88732 0.90602 1.24942 0.94857 0.95032 0.99163 1.69878 1.36437 1.22843 1.23916 0.86363 0.78512 0.80171 0.81669 1.20492 1.19659 1.21101 1.25429 0.76597 0.83296 0.83599 1.90511 1.36241 1.26666 1.86583 1.86609 1.70549 1.55841 1.15245 1.22287 0.99375 0.95442 0.82566 1.23572 1.05140 1.03042 0.94133 1.85480 1.65272 1.38650 0.95963 1.21792 1.01659 0.98947 0.96987 1.21292 0.98984 0.95406 1.00034 1.21102 0.99014 0.99416 0.92375 1.21199 0.99259 0.97382 0.97054 1.21086 0.97285 0.95333 0.98546 1.20766 1.00880 1.00504 0.90416 0.95794 0.88481 0.94926 0.92652 0.90753 0.90740 0.88158 0.88146 0.85462 0.85581 0.85825 0.85530 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.90 37.16 0.33 -2.80 16 2 C 0.06 1.49 2.74 -92.93 -0.25 1.23 16 3 H 0.06 1.67 8.14 -51.92 -0.42 1.25 16 4 C -0.51 -14.34 8.37 -34.44 -0.29 -14.63 16 5 H 0.08 2.21 6.76 -52.49 -0.35 1.86 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.67 11.32 55.43 0.63 -24.04 16 8 Si 0.91 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.47 10.88 7.25 36.00 0.26 11.14 16 13 O -0.51 -13.07 15.21 -18.75 -0.29 -13.35 16 14 O -0.36 -7.07 10.12 -39.25 -0.40 -7.47 16 15 C 0.08 1.24 5.47 37.16 0.20 1.45 16 16 C -0.11 -1.36 4.71 37.16 0.18 -1.18 16 17 S -0.10 -1.15 21.92 -107.50 -2.36 -3.51 16 18 C -0.08 -0.89 6.11 -39.04 -0.24 -1.12 16 19 C -0.13 -1.36 9.36 -39.37 -0.37 -1.73 16 20 C -0.10 -0.86 10.04 -39.61 -0.40 -1.26 16 21 C -0.13 -1.01 10.04 -39.53 -0.40 -1.40 16 22 C -0.10 -0.83 10.04 -39.62 -0.40 -1.22 16 23 C -0.10 -0.98 9.79 -39.36 -0.39 -1.36 16 24 H 0.02 0.48 8.11 -51.93 -0.42 0.06 16 25 H 0.10 2.45 6.07 -51.93 -0.32 2.13 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 29 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 30 H 0.10 1.15 7.74 -51.92 -0.40 0.75 16 31 H 0.10 1.15 7.76 -51.93 -0.40 0.75 16 32 H 0.13 1.22 5.88 -52.49 -0.31 0.91 16 33 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 322.99 15.07 4.87 4.87 Total: -1.00 -29.96 322.99 -9.14 -39.09 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -4.72 Total: -0.66 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -1.85 Total: -11.30 kcal Atomic # 7 Polarization: -24.67 SS G_CDS: 0.63 Total: -24.04 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.68 Total: -20.82 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.15 SS G_CDS: -2.36 Total: -3.51 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.96 -9.14 -39.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330231631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.974 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds