Wall clock time and date at job start Tue Mar 31 2020 01:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.20822 * 119.99840 * 120.00361 * 12 2 1 14 14 O 1.34228 * 120.00316 * 300.00594 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.46910 * 180.02562 * 15 14 12 17 17 S 1.81403 * 109.47248 * 180.02562 * 16 15 14 18 18 C 1.76195 * 103.00185 * 179.97438 * 17 16 15 19 19 C 1.38968 * 120.08019 * 359.72072 * 18 17 16 20 20 C 1.38084 * 119.91778 * 179.71977 * 19 18 17 21 21 C 1.38308 * 120.07890 * 0.53731 * 20 19 18 22 22 C 1.38297 * 120.16315 * 359.76102 * 21 20 19 23 23 C 1.38083 * 120.07705 * 359.96109 * 22 21 20 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 29 29 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 30 30 H 1.09006 * 109.47239 * 299.99741 * 16 15 14 31 31 H 1.08995 * 109.47984 * 59.99571 * 16 15 14 32 32 H 1.07995 * 120.04092 * 0.02562 * 19 18 17 33 33 H 1.07999 * 119.96371 * 180.27609 * 20 19 18 34 34 H 1.07998 * 119.91549 * 179.74114 * 21 20 19 35 35 H 1.07995 * 119.96510 * 179.97438 * 22 21 20 36 36 H 1.07998 * 120.03924 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6926 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2277 -0.9855 3.5897 16 6 1.7554 -0.3190 4.8834 17 16 2.4053 -1.2353 6.3078 18 6 1.7684 -0.3352 7.6821 19 6 0.9789 0.7891 7.4729 20 6 0.4768 1.4886 8.5524 21 6 0.7678 1.0779 9.8406 22 6 1.5582 -0.0369 10.0527 23 6 2.0591 -0.7447 8.9780 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7088 1.1611 -3.4845 28 1 1.8643 -2.0126 3.5570 29 1 3.3172 -0.9843 3.5566 30 1 2.1184 0.7083 4.9164 31 1 0.6660 -0.3205 4.9163 32 1 0.7544 1.1126 6.4673 33 1 -0.1405 2.3599 8.3906 34 1 0.3771 1.6294 10.6830 35 1 1.7838 -0.3546 11.0599 36 1 2.6759 -1.6154 9.1443 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330231631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:32 Heat of formation + Delta-G solvation = -87.133861 kcal Electronic energy + Delta-G solvation = -18274.867988 eV Core-core repulsion = 15235.360875 eV Total energy + Delta-G solvation = -3039.507113 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.41065 -39.83724 -37.73628 -35.94926 -33.40717 -32.48659 -31.92698 -31.71927 -27.29993 -25.83810 -24.34848 -23.63500 -23.05607 -21.72371 -18.82494 -18.68390 -18.14059 -17.72780 -17.38782 -17.16927 -16.22674 -16.01961 -15.71281 -15.58094 -14.95530 -14.65535 -14.38609 -14.16703 -14.02703 -13.70304 -13.28716 -13.16576 -12.98907 -12.75192 -12.63315 -12.42544 -12.29866 -12.08273 -12.05231 -11.69073 -11.31790 -11.13118 -11.07291 -10.76136 -10.54682 -9.95759 -8.50682 -8.21658 -6.34870 0.15311 0.22326 0.39930 1.24546 1.37450 1.42531 1.42681 1.54181 1.99347 2.43809 2.75316 3.08660 3.49972 3.61841 3.90579 3.99298 4.07637 4.21689 4.25614 4.38516 4.49482 4.54657 4.57238 4.67610 4.77841 4.88013 4.98232 5.05450 5.28865 5.32967 5.42805 5.44394 5.55511 5.67361 5.86936 5.97099 6.08657 6.71408 6.97243 7.34077 8.84809 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.047766 B = 0.002768 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.053237 B =10111.976617 C =10601.852175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 H 0.054 0.946 4 C -0.540 4.540 5 H 0.056 0.944 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.276 1.276 11 H -0.273 1.273 12 C 0.475 3.525 13 O -0.540 6.540 14 O -0.356 6.356 15 C 0.076 3.924 16 C -0.099 4.099 17 S -0.113 6.113 18 C -0.100 4.100 19 C -0.149 4.149 20 C -0.107 4.107 21 C -0.126 4.126 22 C -0.103 4.103 23 C -0.114 4.114 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.029 0.971 27 H 0.269 0.731 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.128 0.872 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.774 1.793 24.191 24.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.032 3.968 3 H 0.072 0.928 4 C -0.578 4.578 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.788 3.212 9 H -0.198 1.198 10 H -0.201 1.201 11 H -0.198 1.198 12 C 0.320 3.680 13 O -0.430 6.430 14 O -0.274 6.274 15 C 0.001 3.999 16 C -0.247 4.247 17 S 0.130 5.870 18 C -0.212 4.212 19 C -0.172 4.172 20 C -0.126 4.126 21 C -0.146 4.146 22 C -0.123 4.123 23 C -0.138 4.138 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.146 0.854 33 H 0.163 0.837 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.931 0.595 23.905 23.931 hybrid contribution -0.283 0.531 -0.982 1.152 sum -1.214 1.126 22.923 22.983 Atomic orbital electron populations 1.21577 0.94202 0.99995 1.02172 1.18707 0.96029 0.96223 0.85841 0.92842 1.21254 1.32703 1.13335 0.90503 0.92598 1.25633 0.94855 0.95666 1.01547 1.69953 1.36529 1.23381 1.24808 0.85470 0.78412 0.78725 0.78553 1.19820 1.20111 1.19800 1.24923 0.76009 0.82585 0.84500 1.90493 1.37414 1.27780 1.87273 1.86537 1.70106 1.55790 1.14983 1.22537 0.99392 0.95521 0.82431 1.23421 1.05658 1.03145 0.92513 1.85471 1.65887 1.39228 0.96433 1.21853 1.02966 0.99650 0.96776 1.21443 0.99424 0.95617 1.00753 1.21419 0.98971 0.99854 0.92395 1.21602 0.98301 0.97124 0.97614 1.21448 0.96532 0.94986 0.99330 1.21002 1.01251 1.01104 0.90400 0.93045 0.90292 0.95201 0.92195 0.90895 0.90884 0.87273 0.87242 0.85443 0.83663 0.83067 0.82868 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.90 71.98 0.64 -5.03 16 2 C 0.05 2.61 2.74 -12.29 -0.03 2.58 16 3 H 0.05 2.82 8.14 -2.38 -0.02 2.80 16 4 C -0.54 -30.67 8.37 25.60 0.21 -30.46 16 5 H 0.06 3.34 6.76 -2.91 -0.02 3.32 16 6 C 0.02 1.26 5.30 84.66 0.45 1.71 16 7 N -0.91 -50.13 11.32 21.45 0.24 -49.88 16 8 Si 0.96 43.79 29.54 68.60 2.03 45.81 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 12 C 0.47 22.35 7.25 71.24 0.52 22.86 16 13 O -0.54 -27.99 15.21 21.98 0.33 -27.66 16 14 O -0.36 -13.72 10.12 -51.39 -0.52 -14.24 16 15 C 0.08 2.38 5.47 71.98 0.39 2.77 16 16 C -0.10 -2.36 4.71 71.98 0.34 -2.02 16 17 S -0.11 -2.62 21.92 -56.49 -1.24 -3.86 16 18 C -0.10 -2.09 6.11 22.62 0.14 -1.95 16 19 C -0.15 -2.85 9.36 22.41 0.21 -2.64 16 20 C -0.11 -1.62 10.04 22.25 0.22 -1.39 16 21 C -0.13 -1.61 10.04 22.30 0.22 -1.38 16 22 C -0.10 -1.39 10.04 22.25 0.22 -1.17 16 23 C -0.11 -2.02 9.79 22.41 0.22 -1.80 16 24 H 0.05 2.05 8.11 -2.39 -0.02 2.03 16 25 H 0.08 3.98 6.07 -2.39 -0.01 3.97 16 26 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 28 H 0.07 2.31 8.13 -2.39 -0.02 2.29 16 29 H 0.07 2.31 8.13 -2.39 -0.02 2.29 16 30 H 0.11 2.39 7.74 -2.39 -0.02 2.37 16 31 H 0.11 2.40 7.76 -2.39 -0.02 2.38 16 32 H 0.13 2.31 5.88 -2.91 -0.02 2.29 16 33 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.15 1.06 8.06 -2.91 -0.02 1.03 16 35 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -63.78 322.99 5.67 -58.10 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.07 Total: 9.65 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: 3.76 Total: -17.92 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.24 Total: -49.88 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.19 Total: -41.90 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -1.24 Total: -3.86 kcal Total: -63.78 5.67 -58.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330231631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.032 kcal (2) G-P(sol) polarization free energy of solvation -63.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds