Wall clock time and date at job start Tue Mar 31 2020 01:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31737 * 123.76088 * 2 1 4 4 N 1.27579 * 118.26864 * 179.97438 * 3 2 1 5 5 S 1.56514 * 109.22268 * 359.70963 * 4 3 2 6 6 C 1.35334 * 123.76502 * 179.97438 * 2 1 3 7 7 C 1.50702 * 127.92672 * 0.02562 * 6 2 1 8 8 N 1.46497 * 109.47236 * 89.99919 * 7 6 2 9 9 C 1.35313 * 125.86667 * 125.29282 * 8 7 6 10 10 C 1.35349 * 106.17218 * 180.18574 * 9 8 7 11 11 C 1.50697 * 126.75364 * 179.85517 * 10 9 8 12 12 N 1.46499 * 109.47276 * 94.71254 * 11 10 9 13 13 C 1.36935 * 119.99938 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00518 * 359.72965 * 13 12 11 15 15 C 1.38817 * 119.99990 * 179.97438 * 13 12 11 16 16 N 1.31617 * 119.99869 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99909 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47028 * 60.00888 * 17 15 13 19 19 H 1.48503 * 109.46851 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47412 * 300.00497 * 17 15 13 21 21 N 1.33774 * 106.49914 * 359.59715 * 10 9 8 22 22 N 1.28635 * 108.88067 * 0.25663 * 21 10 9 23 23 H 1.09003 * 109.47502 * 270.02505 * 1 2 3 24 24 H 1.09004 * 109.47194 * 30.02405 * 1 2 3 25 25 H 1.09003 * 109.47342 * 150.02406 * 1 2 3 26 26 H 1.08997 * 109.46644 * 329.99673 * 7 6 2 27 27 H 1.09004 * 109.46850 * 210.00196 * 7 6 2 28 28 H 1.08001 * 126.91913 * 0.04070 * 9 8 7 29 29 H 1.09004 * 109.47205 * 334.71228 * 11 10 9 30 30 H 1.09005 * 109.47240 * 214.71438 * 11 10 9 31 31 H 0.96999 * 119.99984 * 0.02562 * 12 11 10 32 32 H 0.96996 * 119.99743 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2391 1.0952 0.0000 4 7 3.5090 0.9731 0.0005 5 16 3.8805 -0.5473 0.0085 6 6 2.2592 -1.1251 0.0005 7 6 1.7858 -2.5558 0.0006 8 7 1.6329 -3.0197 -1.3805 9 6 2.2121 -4.1189 -1.9164 10 6 1.8071 -4.1673 -3.2069 11 6 2.1826 -5.2066 -4.2315 12 7 1.1528 -6.2478 -4.2711 13 6 1.2799 -7.3042 -5.1331 14 1 2.1372 -7.3676 -5.7869 15 6 0.3044 -8.2911 -5.1702 16 7 -0.7430 -8.2112 -4.3772 17 14 0.4775 -9.7317 -6.3466 18 1 1.7268 -10.4737 -6.0401 19 1 -0.6880 -10.6391 -6.1930 20 1 0.5311 -9.2275 -7.7423 21 7 1.0032 -3.1143 -3.3926 22 7 0.9206 -2.4544 -2.2915 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 0.8266 -2.6210 0.5141 27 1 2.5164 -3.1802 0.5149 28 1 2.8678 -4.8160 -1.4158 29 1 3.1401 -5.6527 -3.9625 30 1 2.2630 -4.7376 -5.2122 31 1 0.3808 -6.1889 -3.6867 32 1 -1.4248 -8.9005 -4.4035 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333539249.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:36 Heat of formation + Delta-G solvation = 187.330625 kcal Electronic energy + Delta-G solvation = -18561.141120 eV Core-core repulsion = 15494.580838 eV Total energy + Delta-G solvation = -3066.560281 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.080 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.06696 -41.30680 -36.01637 -34.71003 -33.16250 -31.88006 -30.05831 -29.67981 -27.39695 -25.99066 -25.79736 -22.86127 -22.12338 -21.15481 -20.30451 -19.02548 -17.60365 -17.09132 -16.69757 -16.02074 -15.14915 -14.69547 -14.60982 -14.25646 -13.98434 -13.59680 -13.32834 -13.19021 -12.83919 -12.64624 -12.59866 -12.00485 -11.78439 -11.29717 -10.93077 -10.80915 -10.57469 -10.48811 -10.22139 -10.13416 -9.98968 -9.96063 -9.75608 -8.93106 -8.88025 -6.93744 -5.75415 -3.05203 -0.31284 0.61967 1.24666 1.69655 1.77495 2.45520 2.84164 3.45475 3.49973 3.51057 3.61011 3.91842 4.01523 4.55017 4.62424 4.67974 4.71791 4.98323 5.20190 5.23323 5.39108 5.41678 5.59531 5.73994 5.78798 6.14943 6.34540 6.61066 6.62485 6.74057 7.35300 7.69431 8.41848 8.75353 9.53700 10.08858 10.44839 11.47254 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.043927 B = 0.003253 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.269747 B = 8605.718635 C = 8876.967784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.069 3.931 3 N -0.242 5.242 4 N -0.277 5.277 5 S 0.447 5.553 6 C -0.301 4.301 7 C 0.211 3.789 8 N -0.305 5.305 9 C -0.042 4.042 10 C -0.002 4.002 11 C 0.232 3.768 12 N -0.725 5.725 13 C -0.242 4.242 14 H 0.073 0.927 15 C -0.012 4.012 16 N -0.932 5.932 17 Si 0.910 3.090 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 N -0.249 5.249 22 N -0.089 5.089 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.192 0.808 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.385 0.615 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.378 13.640 15.066 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.077 4.077 3 N -0.108 5.108 4 N -0.256 5.256 5 S 0.584 5.416 6 C -0.440 4.440 7 C 0.087 3.913 8 N -0.100 5.100 9 C -0.192 4.192 10 C -0.140 4.140 11 C 0.103 3.897 12 N -0.370 5.370 13 C -0.373 4.373 14 H 0.091 0.909 15 C -0.208 4.208 16 N -0.580 5.580 17 Si 0.740 3.260 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 N -0.117 5.117 22 N -0.068 5.068 23 H 0.103 0.897 24 H 0.105 0.895 25 H 0.110 0.890 26 H 0.140 0.860 27 H 0.142 0.858 28 H 0.209 0.791 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.219 0.781 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.125 15.829 14.632 23.408 hybrid contribution -0.914 -2.214 -0.032 2.396 sum 8.211 13.615 14.600 21.586 Atomic orbital electron populations 1.20449 0.84455 1.05415 1.03546 1.22326 1.00579 0.86157 0.98636 1.71286 0.96501 1.27539 1.15518 1.78866 1.10730 1.14940 1.21086 1.81474 1.08380 1.01519 1.50226 1.26804 1.00283 1.01286 1.15628 1.19975 1.04832 0.87752 0.78789 1.47280 1.32836 1.18855 1.10996 1.23465 1.05979 0.93959 0.95821 1.22509 0.98890 0.97683 0.94903 1.18962 0.92736 0.85405 0.92601 1.42289 1.23974 1.23198 1.47583 1.19188 1.05184 0.98875 1.14013 0.90932 1.24755 0.96948 0.99238 0.99873 1.69667 1.11488 1.35689 1.41203 0.86232 0.76792 0.82219 0.80709 1.21218 1.21728 1.21179 1.75135 1.15872 1.05504 1.15226 1.78258 1.14498 1.21119 0.92967 0.89717 0.89492 0.88964 0.86046 0.85787 0.79114 0.94401 0.94329 0.78092 0.93447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.01 36.01 0.36 -0.28 16 2 C 0.07 0.71 6.88 -83.67 -0.58 0.13 16 3 N -0.24 -2.98 11.68 32.45 0.38 -2.60 16 4 N -0.28 -3.25 12.54 60.35 0.76 -2.49 16 5 S 0.45 3.73 23.40 -107.50 -2.52 1.22 16 6 C -0.30 -2.64 6.04 -35.34 -0.21 -2.86 16 7 C 0.21 1.56 6.57 -5.19 -0.03 1.52 16 8 N -0.30 -3.80 3.43 -62.44 -0.21 -4.02 16 9 C -0.04 -0.58 11.50 -17.05 -0.20 -0.77 16 10 C 0.00 -0.04 6.61 -82.78 -0.55 -0.59 16 11 C 0.23 4.74 6.82 -5.20 -0.04 4.71 16 12 N -0.73 -18.62 5.59 -61.08 -0.34 -18.96 16 13 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 14 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 15 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 16 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 17 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 N -0.25 -4.89 12.41 33.29 0.41 -4.48 16 22 N -0.09 -1.46 12.68 60.35 0.77 -0.70 16 23 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.09 0.82 7.44 -51.93 -0.39 0.44 16 26 H 0.12 0.69 7.76 -51.93 -0.40 0.28 16 27 H 0.12 0.46 8.07 -51.93 -0.42 0.04 16 28 H 0.19 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.39 10.64 7.66 -40.82 -0.31 10.33 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 303.29 15.07 4.57 4.57 Total: -1.00 -35.55 303.29 -5.15 -40.70 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -3.18 Total: 2.60 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -1.49 Total: -5.47 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: 2.48 Total: -60.86 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -2.52 Total: 1.22 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.55 -5.15 -40.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333539249.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.031 kcal (2) G-P(sol) polarization free energy of solvation -35.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 192.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 187.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds