Wall clock time and date at job start Tue Mar 31 2020 01:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31737 * 123.76088 * 2 1 4 4 N 1.27579 * 118.26864 * 179.97438 * 3 2 1 5 5 S 1.56514 * 109.22268 * 359.70963 * 4 3 2 6 6 C 1.35334 * 123.76502 * 179.97438 * 2 1 3 7 7 C 1.50702 * 127.92672 * 0.02562 * 6 2 1 8 8 N 1.46497 * 109.47236 * 89.99919 * 7 6 2 9 9 C 1.35313 * 125.86667 * 125.29282 * 8 7 6 10 10 C 1.35349 * 106.17218 * 180.18574 * 9 8 7 11 11 C 1.50697 * 126.75364 * 179.85517 * 10 9 8 12 12 N 1.46499 * 109.47276 * 94.71254 * 11 10 9 13 13 C 1.36935 * 119.99938 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00518 * 359.72965 * 13 12 11 15 15 C 1.38817 * 119.99990 * 179.97438 * 13 12 11 16 16 N 1.31617 * 119.99869 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99909 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47028 * 60.00888 * 17 15 13 19 19 H 1.48503 * 109.46851 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47412 * 300.00497 * 17 15 13 21 21 N 1.33774 * 106.49914 * 359.59715 * 10 9 8 22 22 N 1.28635 * 108.88067 * 0.25663 * 21 10 9 23 23 H 1.09003 * 109.47502 * 270.02505 * 1 2 3 24 24 H 1.09004 * 109.47194 * 30.02405 * 1 2 3 25 25 H 1.09003 * 109.47342 * 150.02406 * 1 2 3 26 26 H 1.08997 * 109.46644 * 329.99673 * 7 6 2 27 27 H 1.09004 * 109.46850 * 210.00196 * 7 6 2 28 28 H 1.08001 * 126.91913 * 0.04070 * 9 8 7 29 29 H 1.09004 * 109.47205 * 334.71228 * 11 10 9 30 30 H 1.09005 * 109.47240 * 214.71438 * 11 10 9 31 31 H 0.96999 * 119.99984 * 0.02562 * 12 11 10 32 32 H 0.96996 * 119.99743 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2391 1.0952 0.0000 4 7 3.5090 0.9731 0.0005 5 16 3.8805 -0.5473 0.0085 6 6 2.2592 -1.1251 0.0005 7 6 1.7858 -2.5558 0.0006 8 7 1.6329 -3.0197 -1.3805 9 6 2.2121 -4.1189 -1.9164 10 6 1.8071 -4.1673 -3.2069 11 6 2.1826 -5.2066 -4.2315 12 7 1.1528 -6.2478 -4.2711 13 6 1.2799 -7.3042 -5.1331 14 1 2.1372 -7.3676 -5.7869 15 6 0.3044 -8.2911 -5.1702 16 7 -0.7430 -8.2112 -4.3772 17 14 0.4775 -9.7317 -6.3466 18 1 1.7268 -10.4737 -6.0401 19 1 -0.6880 -10.6391 -6.1930 20 1 0.5311 -9.2275 -7.7423 21 7 1.0032 -3.1143 -3.3926 22 7 0.9206 -2.4544 -2.2915 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 0.8266 -2.6210 0.5141 27 1 2.5164 -3.1802 0.5149 28 1 2.8678 -4.8160 -1.4158 29 1 3.1401 -5.6527 -3.9625 30 1 2.2630 -4.7376 -5.2122 31 1 0.3808 -6.1889 -3.6867 32 1 -1.4248 -8.9005 -4.4035 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333539249.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:36 Heat of formation + Delta-G solvation = 160.226491 kcal Electronic energy + Delta-G solvation = -18562.316443 eV Core-core repulsion = 15494.580838 eV Total energy + Delta-G solvation = -3067.735605 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.080 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.21805 -42.06697 -37.13862 -36.28612 -34.14333 -33.57037 -31.57005 -30.60621 -28.15069 -27.55508 -26.73851 -24.74476 -23.14482 -22.34344 -21.24033 -19.73994 -19.31550 -18.32536 -17.68790 -16.88777 -16.57985 -15.96776 -15.83033 -15.56997 -15.08540 -14.74861 -14.61876 -14.24224 -13.93327 -13.69936 -13.44849 -13.31668 -12.98848 -12.71389 -12.48500 -12.46813 -12.10869 -11.86313 -11.78169 -11.23519 -11.11752 -10.92081 -10.91354 -10.67812 -10.16908 -8.98897 -7.90983 -5.20866 -1.04890 -0.04610 0.50980 0.66785 0.96734 1.48147 1.53917 1.55738 1.61571 1.62393 2.61830 2.89950 3.23820 3.37826 3.42605 3.57084 3.92784 4.09048 4.20222 4.25323 4.30190 4.31437 4.59722 4.65843 4.72952 4.90482 5.12585 5.19003 5.20983 5.53458 5.65247 6.29002 6.61405 7.36186 7.54842 8.08098 8.33605 9.32640 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.043927 B = 0.003253 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.269747 B = 8605.718635 C = 8876.967784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.057 3.943 3 N -0.277 5.277 4 N -0.320 5.320 5 S 0.513 5.487 6 C -0.304 4.304 7 C 0.199 3.801 8 N -0.289 5.289 9 C -0.011 4.011 10 C -0.041 4.041 11 C 0.235 3.765 12 N -0.738 5.738 13 C -0.245 4.245 14 H 0.083 0.917 15 C -0.075 4.075 16 N -0.972 5.972 17 Si 0.977 3.023 18 H -0.271 1.271 19 H -0.298 1.298 20 H -0.281 1.281 21 N -0.300 5.300 22 N -0.104 5.104 23 H 0.109 0.891 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.144 0.856 27 H 0.174 0.826 28 H 0.237 0.763 29 H 0.065 0.935 30 H 0.024 0.976 31 H 0.372 0.628 32 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.041 12.664 16.480 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 N -0.142 5.142 4 N -0.299 5.299 5 S 0.650 5.350 6 C -0.443 4.443 7 C 0.077 3.923 8 N -0.083 5.083 9 C -0.162 4.162 10 C -0.179 4.179 11 C 0.107 3.893 12 N -0.381 5.381 13 C -0.377 4.377 14 H 0.101 0.899 15 C -0.267 4.267 16 N -0.622 5.622 17 Si 0.805 3.195 18 H -0.197 1.197 19 H -0.224 1.224 20 H -0.207 1.207 21 N -0.168 5.168 22 N -0.083 5.083 23 H 0.127 0.873 24 H 0.097 0.903 25 H 0.104 0.896 26 H 0.162 0.838 27 H 0.191 0.809 28 H 0.254 0.746 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.203 0.797 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.829 14.920 16.054 24.446 hybrid contribution -1.327 -1.845 -0.382 2.305 sum 9.502 13.075 15.673 22.514 Atomic orbital electron populations 1.20481 0.83608 1.04640 1.04915 1.22627 1.01353 0.86374 0.98693 1.71311 0.96929 1.29017 1.16955 1.78612 1.10825 1.17747 1.22766 1.81130 1.07084 0.99151 1.47655 1.27019 1.00621 1.01649 1.14989 1.20684 1.07780 0.87536 0.76297 1.47640 1.30735 1.17924 1.12044 1.23957 1.04350 0.93789 0.94128 1.22298 1.01164 0.97871 0.96554 1.18966 0.92342 0.84926 0.93047 1.42494 1.24717 1.23983 1.46933 1.19658 1.05078 0.99165 1.13765 0.89895 1.25601 0.96942 1.02247 1.01956 1.69836 1.12470 1.36598 1.43311 0.85164 0.76832 0.78878 0.78578 1.19683 1.22431 1.20717 1.75065 1.17543 1.06855 1.17302 1.78162 1.15570 1.21426 0.93114 0.87279 0.90267 0.89639 0.83801 0.80881 0.74626 0.91706 0.95855 0.79718 0.94078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.01 71.24 0.71 -0.47 16 2 C 0.06 1.09 6.88 41.90 0.29 1.38 16 3 N -0.28 -6.71 11.68 -51.26 -0.60 -7.31 16 4 N -0.32 -7.27 12.54 37.02 0.46 -6.81 16 5 S 0.51 7.30 23.40 -56.49 -1.32 5.98 16 6 C -0.30 -4.50 6.04 25.02 0.15 -4.35 16 7 C 0.20 2.10 6.57 85.63 0.56 2.67 16 8 N -0.29 -6.33 3.43 -351.47 -1.21 -7.53 16 9 C -0.01 -0.26 11.50 83.49 0.96 0.70 16 10 C -0.04 -1.43 6.61 41.59 0.28 -1.16 16 11 C 0.23 9.43 6.82 85.63 0.58 10.02 16 12 N -0.74 -37.85 5.59 -347.17 -1.94 -39.80 16 13 C -0.25 -13.57 9.99 84.04 0.84 -12.73 16 14 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 15 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 16 N -0.97 -59.79 13.06 21.65 0.28 -59.51 16 17 Si 0.98 45.67 29.55 68.60 2.03 47.70 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 19 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 N -0.30 -11.78 12.41 -48.60 -0.60 -12.38 16 22 N -0.10 -3.29 12.68 37.02 0.47 -2.82 16 23 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.08 1.44 7.44 -2.39 -0.02 1.42 16 26 H 0.14 1.01 7.76 -2.39 -0.02 0.99 16 27 H 0.17 0.19 8.07 -2.39 -0.02 0.17 16 28 H 0.24 3.25 8.06 -2.91 -0.02 3.22 16 29 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 30 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.37 20.78 7.66 -92.71 -0.71 20.07 16 32 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -79.90 303.29 2.87 -77.02 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.46 Total: 13.25 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 4.84 Total: -7.80 kcal Atomic # 7 Polarization: -133.02 SS G_CDS: -3.13 Total: -136.16 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Atomic # 16 Polarization: 7.30 SS G_CDS: -1.32 Total: 5.98 kcal Total: -79.90 2.87 -77.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333539249.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.251 kcal (2) G-P(sol) polarization free energy of solvation -79.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds