Wall clock time and date at job start Tue Mar 31 2020 01:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47359 * 267.81443 * 3 2 1 5 5 C 1.34774 * 120.00408 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99911 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00197 * 180.02562 * 5 4 3 8 8 S 1.81001 * 109.47052 * 179.97438 * 7 5 4 9 9 C 1.76202 * 99.99784 * 179.97438 * 8 7 5 10 10 N 1.32388 * 126.26021 * 359.97438 * 9 8 7 11 11 N 1.28516 * 110.20609 * 180.02562 * 10 9 8 12 12 C 1.33098 * 109.74302 * 0.02562 * 11 10 9 13 13 C 1.39776 * 126.56257 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99778 * 186.09356 * 13 12 11 15 15 C 1.40085 * 120.00068 * 6.08606 * 13 12 11 16 16 N 1.30808 * 119.99942 * 184.12744 * 15 13 12 17 17 Si 1.86799 * 119.99669 * 4.13543 * 15 13 12 18 18 H 1.48509 * 109.46950 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.47355 * 299.99259 * 17 15 13 20 20 H 1.48501 * 109.47215 * 59.99928 * 17 15 13 21 21 N 1.36669 * 126.25987 * 180.30691 * 9 8 7 22 22 C 1.46505 * 127.15024 * 359.97438 * 21 9 8 23 23 H 4.40649 * 5.51442 * 179.97438 * 4 1 2 24 24 H 1.09003 * 109.47199 * 147.82243 * 3 2 1 25 25 H 1.08993 * 109.47568 * 27.81908 * 3 2 1 26 26 H 0.97000 * 119.99422 * 0.02562 * 4 3 2 27 27 H 1.09003 * 109.46642 * 59.99892 * 7 5 4 28 28 H 1.08993 * 109.47041 * 300.00220 * 7 5 4 29 29 H 0.97000 * 120.00392 * 354.84969 * 16 15 13 30 30 H 1.08991 * 109.47295 * 270.14314 * 22 21 9 31 31 H 1.08996 * 109.46934 * 30.14387 * 22 21 9 32 32 H 1.09000 * 109.46691 * 150.13746 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 0.0536 1.3803 5 6 4.4594 0.0641 1.6264 6 8 5.2476 0.0302 0.7052 7 6 4.9617 0.1179 3.0462 8 16 6.7717 0.1188 3.0461 9 6 7.0776 0.1852 4.7801 10 7 6.1623 0.2217 5.7359 11 7 6.7267 0.2664 6.8896 12 6 8.0496 0.2619 6.7434 13 6 9.0006 0.3024 7.7670 14 1 10.0495 0.3933 7.5262 15 6 8.5932 0.2253 9.1050 16 7 9.4740 0.3442 10.0648 17 14 6.7921 -0.0478 9.5186 18 1 6.6241 -0.0916 10.9935 19 1 5.9819 1.0646 8.9606 20 1 6.3387 -1.3339 8.9308 21 7 8.3032 0.2148 5.3841 22 6 9.6133 0.1975 4.7286 23 1 -1.0500 0.0002 0.0000 24 1 3.0090 0.8707 -0.5473 25 1 3.0098 -0.9080 -0.4795 26 1 2.5040 0.0810 2.1170 27 1 4.5992 -0.7526 3.5930 28 1 4.5975 1.0261 3.5262 29 1 10.4178 0.4109 9.8514 30 1 9.9429 -0.8337 4.6024 31 1 9.5376 0.6767 3.7526 32 1 10.3342 0.7367 5.3432 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339656211.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:27 Heat of formation + Delta-G solvation = 55.922370 kcal Electronic energy + Delta-G solvation = -18232.144108 eV Core-core repulsion = 15127.592786 eV Total energy + Delta-G solvation = -3104.551322 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.83824 -40.84600 -36.59654 -35.92896 -35.39365 -33.71384 -32.07555 -31.30390 -28.43727 -27.66968 -27.09674 -23.34014 -22.34710 -21.76050 -20.18282 -19.78341 -18.46357 -17.96935 -17.22061 -17.06818 -16.80255 -16.72046 -15.81838 -15.54019 -15.19044 -15.16416 -14.76015 -14.35621 -14.26236 -14.19708 -13.72818 -13.52760 -13.09536 -12.84891 -11.99156 -11.89160 -11.74156 -11.53823 -11.50197 -11.40019 -11.14855 -10.91679 -10.56842 -10.36208 -10.24243 -9.48285 -8.70022 -6.85210 0.14146 0.98780 1.03362 1.35114 1.43435 1.55727 1.61116 1.82286 1.95504 2.13144 2.21587 2.42065 2.45835 3.05251 3.32973 3.58178 3.94865 3.99983 4.34399 4.35443 4.47391 4.49169 4.51825 4.56984 4.70184 4.99144 5.15999 5.23964 5.37909 5.68872 6.01166 6.25891 6.39962 6.56522 6.57381 6.94159 7.93175 8.14654 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.029373 B = 0.003750 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.031400 B = 7463.955343 C = 8384.260730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.249 4.249 3 C 0.232 3.768 4 N -0.710 5.710 5 C 0.546 3.454 6 O -0.556 6.556 7 C -0.135 4.135 8 S 0.057 5.943 9 C 0.070 3.930 10 N -0.306 5.306 11 N -0.446 5.446 12 C 0.325 3.675 13 C -0.508 4.508 14 H 0.083 0.917 15 C 0.041 3.959 16 N -0.823 5.823 17 Si 1.146 2.854 18 H -0.299 1.299 19 H -0.275 1.275 20 H -0.293 1.293 21 N -0.514 5.514 22 C 0.092 3.908 23 H 0.253 0.747 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.419 0.581 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.286 0.714 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.898 -0.773 -17.552 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.250 4.250 3 C 0.110 3.890 4 N -0.363 5.363 5 C 0.331 3.669 6 O -0.435 6.435 7 C -0.287 4.287 8 S 0.282 5.718 9 C -0.305 4.305 10 N -0.148 5.148 11 N -0.294 5.294 12 C 0.079 3.921 13 C -0.549 4.549 14 H 0.101 0.899 15 C -0.179 4.179 16 N -0.449 5.449 17 Si 0.975 3.025 18 H -0.228 1.228 19 H -0.201 1.201 20 H -0.220 1.220 21 N -0.213 5.213 22 C -0.051 4.051 23 H 0.269 0.731 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.256 0.744 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.885 -0.886 -17.228 21.532 hybrid contribution 1.632 0.197 -0.192 1.656 sum -11.253 -0.689 -17.420 20.750 Atomic orbital electron populations 1.25873 0.96739 0.98770 0.94896 1.22951 0.94470 1.02754 1.04819 1.18075 0.83908 1.03961 0.83013 1.45750 1.06048 1.74794 1.09710 1.19573 0.82748 0.75512 0.89084 1.90742 1.55805 1.50633 1.46339 1.23530 0.96630 1.10195 0.98352 1.85284 1.04181 1.94405 0.87961 1.26748 0.85246 1.16868 1.01655 1.74159 1.26877 1.18964 0.94832 1.73847 1.03498 1.36326 1.15769 1.21793 0.92926 0.94754 0.82675 1.19403 0.93818 1.50651 0.91074 0.89926 1.27817 1.10155 0.88750 0.91197 1.70667 1.04869 1.33572 1.35746 0.82205 0.69264 0.78997 0.72037 1.22782 1.20149 1.22022 1.46166 1.06928 1.62541 1.05698 1.21917 0.80961 1.03807 0.98392 0.73057 0.88806 0.88805 0.74422 0.85104 0.85111 0.90303 0.90255 0.88406 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 19.25 74.32 1.43 -0.07 16 2 C -0.25 -3.52 13.46 31.12 0.42 -3.10 16 3 C 0.23 3.63 6.15 84.57 0.52 4.15 16 4 N -0.71 -12.16 5.54 -472.13 -2.61 -14.77 16 5 C 0.55 12.98 7.85 87.66 0.69 13.67 16 6 O -0.56 -16.78 15.86 -3.04 -0.05 -16.83 16 7 C -0.14 -3.52 5.71 71.24 0.41 -3.12 16 8 S 0.06 1.86 20.92 -56.49 -1.18 0.68 16 9 C 0.07 3.02 8.09 179.18 1.45 4.47 16 10 N -0.31 -15.05 11.62 -56.17 -0.65 -15.70 16 11 N -0.45 -24.47 7.52 -55.02 -0.41 -24.89 16 12 C 0.33 17.26 7.27 133.23 0.97 18.23 16 13 C -0.51 -27.39 9.50 23.09 0.22 -27.17 16 14 H 0.08 4.32 7.46 -2.91 -0.02 4.30 16 15 C 0.04 2.21 5.52 85.29 0.47 2.68 16 16 N -0.82 -44.26 13.65 21.86 0.30 -43.96 16 17 Si 1.15 57.32 25.90 68.60 1.78 59.09 16 18 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 19 H -0.27 -14.25 6.76 99.48 0.67 -13.58 16 20 H -0.29 -15.04 7.11 99.48 0.71 -14.33 16 21 N -0.51 -23.13 3.26 -543.63 -1.77 -24.90 16 22 C 0.09 3.08 10.89 127.77 1.39 4.47 16 23 H 0.25 0.61 7.80 -4.42 -0.03 0.57 16 24 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.42 5.41 8.45 -92.71 -0.78 4.63 16 27 H 0.13 3.26 8.14 -2.39 -0.02 3.24 16 28 H 0.13 3.26 8.14 -2.40 -0.02 3.24 16 29 H 0.29 14.65 8.72 -92.71 -0.81 13.84 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.10 2.76 7.85 -2.39 -0.02 2.74 16 32 H 0.08 2.76 7.48 -2.39 -0.02 2.74 16 Total: -1.00 -71.38 307.39 3.66 -67.72 By element: Atomic # 1 Polarization: -0.95 SS G_CDS: 0.30 Total: -0.65 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 7.96 Total: 14.21 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -5.15 Total: -124.22 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.05 Total: -16.83 kcal Atomic # 14 Polarization: 57.32 SS G_CDS: 1.78 Total: 59.09 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.18 Total: 0.68 kcal Total: -71.38 3.66 -67.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339656211.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.642 kcal (2) G-P(sol) polarization free energy of solvation -71.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds