Wall clock time and date at job start Tue Mar 31 2020 01:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38354 * 120.82639 * 2 1 4 4 C 1.38331 * 119.46479 * 179.72769 * 3 2 1 5 5 N 1.31914 * 121.19672 * 0.56206 * 4 3 2 6 6 C 1.32197 * 121.81110 * 359.71689 * 5 4 3 7 7 O 1.35407 * 119.81175 * 180.02562 * 6 5 4 8 8 C 1.40016 * 120.82775 * 180.28212 * 2 1 3 9 9 C 1.47388 * 120.60179 * 0.02562 * 8 2 1 10 10 O 1.21514 * 119.99342 * 90.00464 * 9 8 2 11 11 O 1.34748 * 120.00223 * 270.00646 * 9 8 2 12 12 C 1.45203 * 116.99977 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47222 * 179.97438 * 12 11 9 14 14 O 1.21290 * 119.99962 * 0.02562 * 13 12 11 15 15 N 1.34770 * 119.99693 * 179.97438 * 13 12 11 16 16 C 1.37107 * 119.99821 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99643 * 0.02562 * 16 15 13 18 18 C 1.38949 * 120.00202 * 180.02562 * 16 15 13 19 19 N 1.31418 * 119.99997 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00039 * 179.97438 * 18 16 15 21 21 H 1.48491 * 109.46997 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46951 * 119.99894 * 20 18 16 23 23 H 1.48496 * 109.47010 * 239.99665 * 20 18 16 24 24 H 1.09002 * 109.47152 * 269.72017 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.72117 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.72098 * 1 2 3 27 27 H 1.07994 * 120.26846 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.40219 * 180.27545 * 4 3 2 29 29 H 0.96699 * 114.00282 * 269.98136 * 7 6 5 30 30 H 1.09000 * 109.47270 * 299.99824 * 12 11 9 31 31 H 1.08998 * 109.47280 * 59.99510 * 12 11 9 32 32 H 0.97001 * 120.00403 * 359.97438 * 15 13 12 33 33 H 0.96993 * 119.99863 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2160 1.1881 0.0000 4 6 3.5989 1.1552 0.0057 5 7 4.2552 0.0109 0.0001 6 6 3.6274 -1.1524 -0.0056 7 8 4.3417 -2.3028 -0.0107 8 6 2.2246 -1.2023 -0.0059 9 6 1.5197 -2.4967 -0.0129 10 8 1.2297 -3.0248 -1.0681 11 8 1.1969 -3.0944 1.1509 12 6 0.5040 -4.3677 1.0680 13 6 0.2283 -4.8810 2.4578 14 8 0.5806 -4.2368 3.4232 15 7 -0.4107 -6.0553 2.6279 16 6 -0.6620 -6.5221 3.8924 17 1 -0.3483 -5.9485 4.7520 18 6 -1.3204 -7.7331 4.0679 19 7 -1.7026 -8.4308 3.0219 20 14 -1.6621 -8.3693 5.7906 21 1 -1.1351 -7.4040 6.7883 22 1 -3.1268 -8.5253 5.9791 23 1 -0.9967 -9.6842 5.9737 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3633 -0.8875 -0.5182 26 1 -0.3633 0.8925 -0.5095 27 1 1.6940 2.1335 0.0004 28 1 4.1513 2.0833 0.0102 29 1 4.5493 -2.6330 -0.8956 30 1 -0.4380 -4.2348 0.5359 31 1 1.1255 -5.0854 0.5326 32 1 -0.6935 -6.5700 1.8559 33 1 -2.1618 -9.2763 3.1444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342994925.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:23:58 Heat of formation + Delta-G solvation = -151.693919 kcal Electronic energy + Delta-G solvation = -21037.401324 eV Core-core repulsion = 17448.801462 eV Total energy + Delta-G solvation = -3588.599862 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.25957 -41.06555 -40.00491 -38.42855 -37.60933 -36.07237 -35.11191 -33.45509 -31.95345 -30.12443 -29.13014 -26.81158 -25.64342 -23.51502 -22.42771 -21.50214 -20.11885 -19.66125 -19.39963 -18.57653 -18.20411 -17.51914 -17.31864 -16.96486 -16.60469 -15.96432 -15.73424 -15.57713 -14.94499 -14.81291 -14.29553 -14.00724 -13.92984 -13.74003 -13.66227 -13.58584 -13.02818 -12.96062 -12.89577 -12.49344 -12.13109 -12.08566 -11.98410 -11.61584 -10.80622 -10.66118 -10.55812 -10.14644 -10.10800 -8.54832 -6.05737 -0.42248 -0.04181 0.73234 1.26834 1.32921 1.43207 1.57789 1.82719 2.27483 2.30411 2.54866 2.91825 3.10328 3.39119 3.50647 3.62609 3.85915 3.93292 4.08184 4.16871 4.18324 4.28615 4.51504 4.61764 4.66500 4.96877 5.02494 5.12344 5.35046 5.42320 5.85712 6.30220 6.36360 6.47074 6.71193 7.00171 7.35860 7.89733 8.62384 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.032486 B = 0.003457 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.713132 B = 8096.894854 C = 8165.318991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.008 3.992 3 C -0.169 4.169 4 C 0.150 3.850 5 N -0.525 5.525 6 C 0.345 3.655 7 O -0.493 6.493 8 C -0.208 4.208 9 C 0.531 3.469 10 O -0.515 6.515 11 O -0.336 6.336 12 C 0.069 3.931 13 C 0.435 3.565 14 O -0.619 6.619 15 N -0.555 5.555 16 C -0.339 4.339 17 H 0.083 0.917 18 C -0.007 4.007 19 N -0.914 5.914 20 Si 0.999 3.001 21 H -0.272 1.272 22 H -0.267 1.267 23 H -0.269 1.269 24 H 0.090 0.910 25 H 0.054 0.946 26 H 0.121 0.879 27 H 0.196 0.804 28 H 0.212 0.788 29 H 0.422 0.578 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.401 0.599 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.996 17.962 -10.705 21.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.000 4.000 3 C -0.188 4.188 4 C -0.006 4.006 5 N -0.245 5.245 6 C 0.166 3.834 7 O -0.304 6.304 8 C -0.213 4.213 9 C 0.374 3.626 10 O -0.404 6.404 11 O -0.251 6.251 12 C -0.008 4.008 13 C 0.222 3.778 14 O -0.506 6.506 15 N -0.192 5.192 16 C -0.468 4.468 17 H 0.101 0.899 18 C -0.208 4.208 19 N -0.554 5.554 20 Si 0.821 3.179 21 H -0.197 1.197 22 H -0.192 1.192 23 H -0.194 1.194 24 H 0.108 0.892 25 H 0.073 0.927 26 H 0.140 0.860 27 H 0.213 0.787 28 H 0.229 0.771 29 H 0.284 0.716 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.235 0.765 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.900 17.966 -9.804 21.300 hybrid contribution -1.057 -1.411 -0.210 1.775 sum 4.843 16.555 -10.013 19.945 Atomic orbital electron populations 1.21091 0.88094 1.05019 1.04360 1.20693 0.98159 0.90683 0.90422 1.22472 0.95202 0.99122 1.01963 1.23601 0.92448 0.95473 0.89127 1.67379 1.42126 0.98497 1.16520 1.19147 0.84851 0.86413 0.92990 1.84697 1.74444 1.35358 1.35851 1.20234 0.94203 0.91960 1.14883 1.21154 0.75193 0.84870 0.81425 1.90839 1.51861 1.65116 1.32555 1.86732 1.68865 1.35244 1.34210 1.22637 0.99087 0.83419 0.95698 1.20047 0.84026 0.83409 0.90311 1.90536 1.57482 1.59404 1.43188 1.41720 1.50256 1.18028 1.09202 1.19763 1.37180 1.04907 0.84987 0.89880 1.26131 0.95522 0.95524 1.03628 1.69674 1.39003 1.15287 1.31390 0.84791 0.78432 0.78074 0.76554 1.19674 1.19237 1.19400 0.89158 0.92711 0.86021 0.78718 0.77133 0.71591 0.86880 0.87419 0.76462 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.69 71.24 0.69 -1.56 16 2 C 0.01 0.17 5.95 -19.40 -0.12 0.05 16 3 C -0.17 -2.19 9.79 22.32 0.22 -1.97 16 4 C 0.15 2.19 11.17 84.70 0.95 3.14 16 5 N -0.53 -12.49 10.37 -307.99 -3.19 -15.69 16 6 C 0.34 9.64 7.77 85.16 0.66 10.30 16 7 O -0.49 -13.77 13.02 -87.01 -1.13 -14.90 16 8 C -0.21 -5.95 5.78 -19.92 -0.12 -6.07 16 9 C 0.53 18.18 5.56 70.23 0.39 18.57 16 10 O -0.51 -18.25 16.90 19.79 0.33 -17.92 16 11 O -0.34 -13.56 9.77 -50.20 -0.49 -14.05 16 12 C 0.07 2.69 5.95 71.24 0.42 3.11 16 13 C 0.44 21.91 7.86 87.66 0.69 22.60 16 14 O -0.62 -36.54 16.08 15.74 0.25 -36.29 16 15 N -0.55 -28.85 5.29 -306.99 -1.62 -30.47 16 16 C -0.34 -19.28 9.68 84.04 0.81 -18.46 16 17 H 0.08 5.03 7.16 -2.91 -0.02 5.01 16 18 C -0.01 -0.38 5.50 84.93 0.47 0.09 16 19 N -0.91 -48.50 13.05 21.66 0.28 -48.22 16 20 Si 1.00 42.23 29.55 68.60 2.03 44.25 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.05 1.18 7.19 -2.39 -0.02 1.16 16 26 H 0.12 1.14 8.10 -2.38 -0.02 1.12 16 27 H 0.20 0.70 8.06 -2.91 -0.02 0.67 16 28 H 0.21 1.11 8.06 -2.91 -0.02 1.09 16 29 H 0.42 7.51 9.06 -74.06 -0.67 6.84 16 30 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 31 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 32 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 33 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -78.99 308.29 1.31 -77.68 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: -0.22 Total: 25.80 kcal Atomic # 6 Polarization: 24.73 SS G_CDS: 5.07 Total: 29.80 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -4.53 Total: -94.38 kcal Atomic # 8 Polarization: -82.12 SS G_CDS: -1.04 Total: -83.16 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -78.99 1.31 -77.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342994925.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.014 kcal (2) G-P(sol) polarization free energy of solvation -78.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds