Wall clock time and date at job start Tue Mar 31 2020 01:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99886 * 2 1 4 4 H 1.48500 * 109.46824 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47305 * 300.00141 * 3 2 1 6 6 H 1.48503 * 109.47162 * 60.00284 * 3 2 1 7 7 C 1.37872 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00075 * 174.57669 * 7 2 1 9 9 C 1.50698 * 120.00327 * 354.57984 * 7 2 1 10 10 C 1.53002 * 112.99702 * 296.31635 * 9 7 2 11 11 O 1.45207 * 109.46941 * 289.50683 * 10 9 7 12 12 C 1.34728 * 116.99628 * 183.41222 * 11 10 9 13 13 O 1.21483 * 120.00514 * 3.60851 * 12 11 10 14 14 C 1.47601 * 119.99421 * 183.61458 * 12 11 10 15 15 C 1.39711 * 120.11906 * 174.24516 * 14 12 11 16 16 C 1.37815 * 119.86960 * 179.71776 * 15 14 12 17 17 C 1.38662 * 120.12790 * 0.25517 * 16 15 14 18 18 F 1.35104 * 119.87786 * 180.02562 * 17 16 15 19 19 C 1.38669 * 120.25031 * 0.02562 * 17 16 15 20 20 C 1.37822 * 120.12119 * 359.97438 * 19 17 16 21 21 C 1.54038 * 113.92805 * 68.24570 * 9 7 2 22 22 O 1.44175 * 85.51541 * 91.66388 * 21 9 7 23 23 C 1.44174 * 93.34146 * 24.19409 * 22 21 9 24 24 H 0.97003 * 120.00565 * 5.01163 * 1 2 3 25 25 H 1.09000 * 109.47052 * 169.51338 * 10 9 7 26 26 H 1.09003 * 109.47381 * 49.50729 * 10 9 7 27 27 H 1.07998 * 120.06172 * 359.97438 * 15 14 12 28 28 H 1.08005 * 119.93434 * 180.27430 * 16 15 14 29 29 H 1.08002 * 119.94414 * 180.02562 * 19 17 16 30 30 H 1.07993 * 120.06212 * 180.02562 * 20 19 17 31 31 H 1.09000 * 113.86179 * 205.81410 * 21 9 7 32 32 H 1.09006 * 113.86203 * 337.51276 * 21 9 7 33 33 H 1.09003 * 113.85888 * 221.66036 * 23 22 21 34 34 H 1.08994 * 113.98366 * 89.96875 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0809 -1.1962 -0.0879 9 6 1.2561 -2.4962 0.1244 10 6 0.5230 -2.6396 1.4597 11 8 1.4911 -2.8264 2.5257 12 6 1.0041 -3.0405 3.7635 13 8 -0.1946 -3.1357 3.9366 14 6 1.9270 -3.1593 4.9092 15 6 1.4226 -3.2608 6.2081 16 6 2.2889 -3.3773 7.2736 17 6 3.6587 -3.3886 7.0589 18 9 4.5034 -3.5036 8.1071 19 6 4.1651 -3.2823 5.7723 20 6 3.3081 -3.1653 4.6993 21 6 0.3879 -2.8368 -1.1016 22 8 1.5488 -3.5413 -1.5862 23 6 2.0896 -3.7321 -0.2634 24 1 -0.4851 0.8368 -0.0734 25 1 -0.1424 -3.5019 1.4180 26 1 -0.0605 -1.7393 1.6524 27 1 0.3559 -3.2521 6.3765 28 1 1.9000 -3.4603 8.2778 29 1 5.2329 -3.2920 5.6107 30 1 3.7035 -3.0829 3.6977 31 1 -0.4589 -3.4849 -0.8758 32 1 0.1150 -1.9699 -1.7033 33 1 3.1664 -3.5751 -0.2005 34 1 1.7638 -4.6531 0.2199 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344138260.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:36 Heat of formation + Delta-G solvation = -132.310411 kcal Electronic energy + Delta-G solvation = -21410.539506 eV Core-core repulsion = 17802.860215 eV Total energy + Delta-G solvation = -3607.679292 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.03673 -41.65341 -40.91697 -39.49067 -37.35381 -34.93764 -32.45418 -32.16949 -31.48467 -27.43546 -27.13734 -26.30043 -24.73646 -24.01645 -21.90532 -20.90439 -19.14643 -18.67393 -18.41161 -17.75767 -17.38361 -16.99087 -16.79898 -16.64950 -16.31898 -16.17401 -16.00188 -15.48284 -14.65697 -14.59722 -14.35811 -14.22792 -13.89119 -13.71239 -13.41664 -13.27148 -12.87241 -12.62562 -12.35190 -12.09741 -11.93388 -11.80331 -11.42177 -11.22402 -10.93577 -10.68399 -10.24327 -10.23438 -9.92539 -8.18821 -6.29203 -0.52658 0.16012 1.39448 1.40140 1.44151 1.53932 1.75878 2.39774 2.57240 2.99519 3.06921 3.21764 3.55986 3.67472 3.83778 4.11279 4.14057 4.24970 4.26088 4.46667 4.47708 4.59178 4.71042 4.78432 4.88366 4.96612 5.02860 5.14539 5.21980 5.25418 5.47687 5.52168 5.60435 5.69637 5.73688 6.22033 6.71460 6.75547 7.37485 8.87239 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.018275 B = 0.004882 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.817566 B = 5733.542448 C = 6258.733859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 0.952 3.048 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.017 3.983 10 C 0.094 3.906 11 O -0.338 6.338 12 C 0.496 3.504 13 O -0.546 6.546 14 C -0.150 4.150 15 C -0.032 4.032 16 C -0.157 4.157 17 C 0.129 3.871 18 F -0.133 7.133 19 C -0.159 4.159 20 C -0.032 4.032 21 C 0.054 3.946 22 O -0.403 6.403 23 C 0.042 3.958 24 H 0.265 0.735 25 H 0.047 0.953 26 H 0.058 0.942 27 H 0.149 0.851 28 H 0.172 0.828 29 H 0.169 0.831 30 H 0.154 0.846 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.413 -6.500 13.046 15.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.177 4.177 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.540 4.540 8 H 0.080 0.920 9 C 0.017 3.983 10 C 0.020 3.980 11 O -0.253 6.253 12 C 0.343 3.657 13 O -0.439 6.439 14 C -0.152 4.152 15 C -0.050 4.050 16 C -0.175 4.175 17 C 0.109 3.891 18 F -0.112 7.112 19 C -0.178 4.178 20 C -0.050 4.050 21 C -0.023 4.023 22 O -0.323 6.323 23 C -0.034 4.034 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.166 0.834 28 H 0.189 0.811 29 H 0.187 0.813 30 H 0.171 0.829 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.045 -6.479 12.876 15.631 hybrid contribution -0.213 1.091 -0.028 1.112 sum 5.832 -5.387 12.849 15.104 Atomic orbital electron populations 1.69959 1.06946 1.27975 1.50058 1.25629 0.95660 1.02101 0.94271 0.85580 0.79455 0.79754 0.77411 1.18795 1.20675 1.21029 1.20899 0.93370 0.89528 1.50154 0.91954 1.21179 0.93277 0.95065 0.88814 1.23233 0.89855 0.99424 0.85515 1.86517 1.41552 1.80548 1.16680 1.21724 0.87403 0.72388 0.84185 1.90765 1.18195 1.48737 1.86183 1.19313 0.93500 1.11022 0.91328 1.21220 1.01530 0.92718 0.89517 1.21282 0.90771 1.04098 1.01384 1.18145 0.87963 0.98835 0.84138 1.91534 1.70651 1.92866 1.56107 1.21369 1.02644 1.03756 0.90002 1.21504 0.90844 0.91756 1.00910 1.23840 0.88591 0.93966 0.95907 1.89465 1.37568 1.78041 1.27180 1.24080 0.99912 0.97284 0.82158 0.92586 0.93483 0.92338 0.83369 0.81070 0.81330 0.82866 0.91376 0.90781 0.89403 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.32 11.26 21.45 0.24 -49.07 16 2 C 0.02 1.23 5.20 84.65 0.44 1.67 16 3 Si 0.95 41.95 29.54 68.60 2.03 43.98 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.50 -25.92 8.27 25.60 0.21 -25.71 16 8 H 0.06 3.21 7.81 -2.91 -0.02 3.18 16 9 C 0.02 0.81 0.56 -52.23 -0.03 0.78 16 10 C 0.09 4.31 4.79 71.98 0.35 4.65 16 11 O -0.34 -14.00 9.28 -56.38 -0.52 -14.52 16 12 C 0.50 18.84 7.88 70.29 0.55 19.39 16 13 O -0.55 -23.35 16.09 19.89 0.32 -23.03 16 14 C -0.15 -4.33 5.87 -20.10 -0.12 -4.44 16 15 C -0.03 -0.74 9.59 22.53 0.22 -0.53 16 16 C -0.16 -2.84 10.01 22.27 0.22 -2.62 16 17 C 0.13 2.42 7.31 22.47 0.16 2.59 16 18 F -0.13 -2.48 17.26 44.97 0.78 -1.70 16 19 C -0.16 -3.00 10.01 22.27 0.22 -2.78 16 20 C -0.03 -0.77 9.61 22.53 0.22 -0.55 16 21 C 0.05 2.50 7.94 72.28 0.57 3.07 16 22 O -0.40 -18.50 12.40 -148.98 -1.85 -20.34 16 23 C 0.04 1.72 8.19 72.27 0.59 2.31 16 24 H 0.26 13.78 8.32 -92.71 -0.77 13.01 16 25 H 0.05 2.05 7.85 -2.39 -0.02 2.03 16 26 H 0.06 3.08 6.75 -2.39 -0.02 3.07 16 27 H 0.15 3.37 7.66 -2.91 -0.02 3.35 16 28 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 29 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 30 H 0.15 3.65 7.62 -2.91 -0.02 3.63 16 31 H 0.07 2.84 7.98 -2.39 -0.02 2.82 16 32 H 0.07 3.75 7.58 -2.38 -0.02 3.73 16 33 H 0.09 3.39 8.08 -2.39 -0.02 3.37 16 34 H 0.08 2.83 8.10 -2.39 -0.02 2.81 16 Total: -1.00 -61.11 306.25 5.73 -55.38 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 1.12 Total: 11.47 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 3.61 Total: -2.16 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.24 Total: -49.07 kcal Atomic # 8 Polarization: -55.84 SS G_CDS: -2.05 Total: -57.89 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.78 Total: -1.70 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -61.11 5.73 -55.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344138260.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.927 kcal (2) G-P(sol) polarization free energy of solvation -61.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds