Wall clock time and date at job start Tue Mar 31 2020 01:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 119.99909 * 2 1 4 4 H 1.48504 * 109.46890 * 269.99853 * 3 2 1 5 5 H 1.48497 * 109.47499 * 29.99962 * 3 2 1 6 6 H 1.48497 * 109.47048 * 150.00026 * 3 2 1 7 7 C 1.38953 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00265 * 359.97438 * 7 2 1 9 9 N 1.37093 * 119.99906 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00289 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99677 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00499 * 180.02562 * 10 9 7 13 13 N 1.46494 * 109.47054 * 179.97438 * 12 10 9 14 14 C 1.29530 * 120.00024 * 185.64129 * 13 12 10 15 15 C 1.47213 * 119.99913 * 25.42109 * 14 13 12 16 16 C 1.39870 * 120.11891 * 34.66127 * 15 14 13 17 17 C 1.37667 * 120.02884 * 180.02562 * 16 15 14 18 18 C 1.39013 * 120.27607 * 359.97438 * 17 16 15 19 19 O 1.35855 * 119.88079 * 179.97438 * 18 17 16 20 20 C 1.39028 * 120.24247 * 0.02562 * 18 17 16 21 21 O 1.36098 * 120.01576 * 179.97438 * 20 18 17 22 22 C 1.38781 * 119.96492 * 0.24593 * 20 18 17 23 23 O 1.35812 * 120.13415 * 179.75188 * 22 20 18 24 24 H 0.97005 * 120.00169 * 0.02562 * 1 2 3 25 25 H 0.97009 * 120.00204 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47097 * 59.99906 * 12 10 9 27 27 H 1.09003 * 109.46628 * 299.99700 * 12 10 9 28 28 H 1.07997 * 120.00124 * 205.42635 * 14 13 12 29 29 H 1.08004 * 119.98669 * 0.04857 * 16 15 14 30 30 H 1.08001 * 119.85941 * 180.02562 * 17 16 15 31 31 H 0.96698 * 114.00094 * 270.02793 * 19 18 17 32 32 H 0.96711 * 114.00050 * 90.00005 * 21 20 18 33 33 H 0.96690 * 114.00151 * 89.97970 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4471 -3.4210 0.0000 12 6 5.5607 -2.3706 0.0012 13 7 6.0489 -3.7518 0.0015 14 6 7.3172 -3.9904 0.1128 15 6 8.1945 -3.0128 0.7774 16 6 7.7188 -2.2640 1.8587 17 6 8.5406 -1.3499 2.4785 18 6 9.8452 -1.1664 2.0347 19 8 10.6492 -0.2618 2.6519 20 6 10.3299 -1.9046 0.9609 21 8 11.6077 -1.7209 0.5299 22 6 9.5082 -2.8248 0.3251 23 8 9.9766 -3.5441 -0.7274 24 1 -0.4851 0.8401 -0.0004 25 1 3.8648 -0.3633 0.0004 26 1 5.9234 -1.8572 0.8916 27 1 5.9247 -1.8564 -0.8884 28 1 7.7310 -4.9065 -0.2820 29 1 6.7062 -2.4032 2.2079 30 1 8.1706 -0.7734 3.3134 31 1 10.6040 0.6270 2.2737 32 1 12.2549 -2.2951 0.9620 33 1 10.3894 -4.3822 -0.4784 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345367994.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:04 Heat of formation + Delta-G solvation = -92.059735 kcal Electronic energy + Delta-G solvation = -20972.079363 eV Core-core repulsion = 17386.065433 eV Total energy + Delta-G solvation = -3586.013930 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.88230 -38.62226 -38.21412 -37.43193 -36.53596 -35.07229 -33.90291 -31.67474 -30.15925 -29.50714 -28.13668 -24.74391 -23.36770 -23.06916 -20.59823 -19.62427 -19.21410 -18.46355 -18.01047 -17.87355 -17.08910 -16.08307 -15.94325 -15.61771 -15.04967 -14.85964 -14.76751 -14.40325 -13.92906 -13.53829 -13.44266 -13.00707 -12.62499 -12.34403 -12.25693 -12.08984 -11.98417 -11.37624 -11.21213 -10.65572 -10.58345 -10.45805 -9.97721 -9.57334 -9.13057 -9.04082 -8.57069 -8.38883 -8.18116 -6.30924 -3.82496 0.37633 0.72104 2.04783 3.00786 3.05931 3.06612 3.14072 3.43728 3.72352 3.73782 4.01454 4.09386 4.24433 4.38666 4.62507 4.78266 4.93379 5.19724 5.22611 5.30753 5.43800 5.66216 5.69911 5.71041 5.83825 5.89493 6.10284 6.20788 6.96088 7.17199 7.42721 7.54254 7.80450 8.14000 8.60528 8.95332 9.41805 9.83343 10.82284 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.004220 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.177750 B = 6633.200756 C = 7518.171174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.593 5.593 10 C 0.456 3.544 11 O -0.552 6.552 12 C 0.010 3.990 13 N -0.459 5.459 14 C 0.173 3.827 15 C -0.129 4.129 16 C -0.080 4.080 17 C -0.136 4.136 18 C 0.104 3.896 19 O -0.491 6.491 20 C 0.051 3.949 21 O -0.480 6.480 22 C 0.121 3.879 23 O -0.478 6.478 24 H 0.273 0.727 25 H 0.370 0.630 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.165 0.835 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.396 0.604 32 H 0.388 0.612 33 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.440 -1.118 4.123 25.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.433 4.433 8 H 0.138 0.862 9 N -0.233 5.233 10 C 0.241 3.759 11 O -0.432 6.432 12 C -0.122 4.122 13 N -0.164 5.164 14 C -0.039 4.039 15 C -0.133 4.133 16 C -0.100 4.100 17 C -0.155 4.155 18 C 0.058 3.942 19 O -0.302 6.302 20 C 0.005 3.995 21 O -0.290 6.290 22 C 0.073 3.927 23 O -0.288 6.288 24 H 0.084 0.916 25 H 0.202 0.798 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.182 0.818 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.253 0.747 32 H 0.243 0.757 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 23.513 -1.663 3.642 23.851 hybrid contribution 1.549 1.791 0.591 2.441 sum 25.061 0.128 4.233 25.417 Atomic orbital electron populations 1.69620 1.05608 1.27470 1.49450 1.25019 0.95480 0.97893 0.97697 0.86687 0.79724 0.84122 0.78948 1.19561 1.20123 1.19592 1.19430 0.79107 0.96690 1.48086 0.86242 1.42171 1.07544 1.05932 1.67648 1.19391 0.87534 0.84668 0.84283 1.90579 1.69077 1.30891 1.52674 1.22398 0.97015 0.89801 1.02943 1.71856 1.11744 1.19802 1.12969 1.24674 0.87655 0.97675 0.93927 1.20631 0.94814 1.00238 0.97598 1.21268 1.00090 0.94180 0.94458 1.21361 0.92148 1.00423 1.01540 1.18788 0.89854 0.94301 0.91254 1.84725 1.64605 1.22525 1.58358 1.19063 0.86751 0.99803 0.93932 1.84903 1.14092 1.64380 1.65602 1.18680 0.91292 0.93835 0.88860 1.84883 1.78807 1.36285 1.28863 0.91603 0.79785 0.90186 0.88364 0.81766 0.84016 0.84118 0.74686 0.75663 0.75224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.97 13.96 55.50 0.77 -25.20 16 2 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 3 Si 0.88 19.49 27.74 -169.99 -4.71 14.78 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 7 C -0.30 -8.77 10.16 -14.93 -0.15 -8.93 16 8 H 0.12 3.94 7.39 -52.49 -0.39 3.55 16 9 N -0.59 -14.49 5.09 -10.96 -0.06 -14.54 16 10 C 0.46 10.91 7.85 -10.99 -0.09 10.83 16 11 O -0.55 -15.77 16.01 5.54 0.09 -15.68 16 12 C 0.01 0.18 5.86 -5.19 -0.03 0.15 16 13 N -0.46 -7.95 10.00 -60.30 -0.60 -8.55 16 14 C 0.17 2.16 10.50 -14.88 -0.16 2.00 16 15 C -0.13 -1.43 5.32 -104.90 -0.56 -1.99 16 16 C -0.08 -0.89 7.78 -39.18 -0.30 -1.20 16 17 C -0.14 -1.33 9.96 -39.50 -0.39 -1.72 16 18 C 0.10 1.01 6.72 -39.00 -0.26 0.75 16 19 O -0.49 -4.19 13.26 -34.15 -0.45 -4.64 16 20 C 0.05 0.50 6.72 -39.09 -0.26 0.23 16 21 O -0.48 -4.24 13.06 -45.49 -0.59 -4.84 16 22 C 0.12 1.21 6.73 -38.64 -0.26 0.95 16 23 O -0.48 -4.10 12.71 -33.87 -0.43 -4.53 16 24 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.37 7.86 5.76 -40.82 -0.24 7.63 16 26 H 0.08 1.22 4.39 -51.93 -0.23 0.99 16 27 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 28 H 0.17 1.51 8.03 -52.49 -0.42 1.09 16 29 H 0.14 1.70 6.42 -52.48 -0.34 1.36 16 30 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.40 1.87 9.06 45.56 0.41 2.28 16 32 H 0.39 1.64 9.07 45.56 0.41 2.05 16 33 H 0.39 1.23 9.06 45.56 0.41 1.65 16 LS Contribution 299.34 15.07 4.51 4.51 Total: -1.00 -38.82 299.34 -4.42 -43.24 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -0.38 Total: 13.32 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -2.56 Total: 2.14 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.12 Total: -48.29 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -1.39 Total: -29.69 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.71 Total: 14.78 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -38.82 -4.42 -43.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345367994.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.819 kcal (2) G-P(sol) polarization free energy of solvation -38.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds