Wall clock time and date at job start Tue Mar 31 2020 01:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 119.99909 * 2 1 4 4 H 1.48504 * 109.46890 * 269.99853 * 3 2 1 5 5 H 1.48497 * 109.47499 * 29.99962 * 3 2 1 6 6 H 1.48497 * 109.47048 * 150.00026 * 3 2 1 7 7 C 1.38953 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00265 * 359.97438 * 7 2 1 9 9 N 1.37093 * 119.99906 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00289 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99677 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00499 * 180.02562 * 10 9 7 13 13 N 1.46494 * 109.47054 * 179.97438 * 12 10 9 14 14 C 1.29530 * 120.00024 * 185.64129 * 13 12 10 15 15 C 1.47213 * 119.99913 * 25.42109 * 14 13 12 16 16 C 1.39870 * 120.11891 * 34.66127 * 15 14 13 17 17 C 1.37667 * 120.02884 * 180.02562 * 16 15 14 18 18 C 1.39013 * 120.27607 * 359.97438 * 17 16 15 19 19 O 1.35855 * 119.88079 * 179.97438 * 18 17 16 20 20 C 1.39028 * 120.24247 * 0.02562 * 18 17 16 21 21 O 1.36098 * 120.01576 * 179.97438 * 20 18 17 22 22 C 1.38781 * 119.96492 * 0.24593 * 20 18 17 23 23 O 1.35812 * 120.13415 * 179.75188 * 22 20 18 24 24 H 0.97005 * 120.00169 * 0.02562 * 1 2 3 25 25 H 0.97009 * 120.00204 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47097 * 59.99906 * 12 10 9 27 27 H 1.09003 * 109.46628 * 299.99700 * 12 10 9 28 28 H 1.07997 * 120.00124 * 205.42635 * 14 13 12 29 29 H 1.08004 * 119.98669 * 0.04857 * 16 15 14 30 30 H 1.08001 * 119.85941 * 180.02562 * 17 16 15 31 31 H 0.96698 * 114.00094 * 270.02793 * 19 18 17 32 32 H 0.96711 * 114.00050 * 90.00005 * 21 20 18 33 33 H 0.96690 * 114.00151 * 89.97970 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4471 -3.4210 0.0000 12 6 5.5607 -2.3706 0.0012 13 7 6.0489 -3.7518 0.0015 14 6 7.3172 -3.9904 0.1128 15 6 8.1945 -3.0128 0.7774 16 6 7.7188 -2.2640 1.8587 17 6 8.5406 -1.3499 2.4785 18 6 9.8452 -1.1664 2.0347 19 8 10.6492 -0.2618 2.6519 20 6 10.3299 -1.9046 0.9609 21 8 11.6077 -1.7209 0.5299 22 6 9.5082 -2.8248 0.3251 23 8 9.9766 -3.5441 -0.7274 24 1 -0.4851 0.8401 -0.0004 25 1 3.8648 -0.3633 0.0004 26 1 5.9234 -1.8572 0.8916 27 1 5.9247 -1.8564 -0.8884 28 1 7.7310 -4.9065 -0.2820 29 1 6.7062 -2.4032 2.2079 30 1 8.1706 -0.7734 3.3134 31 1 10.6040 0.6270 2.2737 32 1 12.2549 -2.2951 0.9620 33 1 10.3894 -4.3822 -0.4784 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345367994.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:03 Heat of formation + Delta-G solvation = -129.529196 kcal Electronic energy + Delta-G solvation = -20973.704161 eV Core-core repulsion = 17386.065433 eV Total energy + Delta-G solvation = -3587.638728 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.61200 -40.31411 -38.99342 -38.32926 -37.28316 -36.17847 -35.80379 -33.79610 -31.15118 -30.27713 -29.39348 -26.58552 -24.36503 -23.79378 -21.80828 -21.15178 -20.39605 -19.90496 -18.94444 -18.51891 -18.04571 -17.55576 -17.07340 -16.71591 -16.45804 -16.01805 -15.71063 -15.41254 -15.15282 -15.02987 -14.65003 -14.45871 -14.12015 -13.80259 -13.53417 -13.03833 -12.96164 -12.81084 -12.45180 -12.07460 -12.00750 -11.60312 -11.54640 -11.24103 -10.52075 -10.29150 -10.00442 -9.72401 -9.42531 -8.44184 -6.06015 -0.40533 0.02111 1.12577 1.27240 1.33490 1.42352 1.89176 2.20526 2.31491 2.70362 2.78106 3.10705 3.12762 3.36288 3.51454 3.64921 3.88770 4.03635 4.11558 4.25656 4.36032 4.54329 4.68034 4.88487 4.91065 5.09600 5.33579 5.44282 5.50768 5.89553 6.52710 6.54424 6.71019 6.76636 6.84870 6.92736 7.33987 7.91292 8.73557 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.004220 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.177750 B = 6633.200756 C = 7518.171174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.964 3.036 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.231 1.231 7 C -0.332 4.332 8 H 0.054 0.946 9 N -0.589 5.589 10 C 0.452 3.548 11 O -0.609 6.609 12 C 0.030 3.970 13 N -0.530 5.530 14 C 0.208 3.792 15 C -0.148 4.148 16 C -0.088 4.088 17 C -0.137 4.137 18 C 0.111 3.889 19 O -0.497 6.497 20 C 0.047 3.953 21 O -0.490 6.490 22 C 0.135 3.865 23 O -0.488 6.488 24 H 0.281 0.719 25 H 0.390 0.610 26 H 0.107 0.893 27 H 0.117 0.883 28 H 0.195 0.805 29 H 0.129 0.871 30 H 0.154 0.846 31 H 0.414 0.586 32 H 0.408 0.592 33 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.467 0.915 4.347 29.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.211 4.211 3 Si 0.783 3.217 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.154 1.154 7 C -0.462 4.462 8 H 0.072 0.928 9 N -0.231 5.231 10 C 0.240 3.760 11 O -0.492 6.492 12 C -0.102 4.102 13 N -0.236 5.236 14 C -0.002 4.002 15 C -0.151 4.151 16 C -0.107 4.107 17 C -0.156 4.156 18 C 0.065 3.935 19 O -0.311 6.311 20 C 0.001 3.999 21 O -0.302 6.302 22 C 0.087 3.913 23 O -0.302 6.302 24 H 0.090 0.910 25 H 0.225 0.775 26 H 0.124 0.876 27 H 0.134 0.866 28 H 0.212 0.788 29 H 0.146 0.854 30 H 0.172 0.828 31 H 0.274 0.726 32 H 0.266 0.734 33 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 27.600 0.353 3.874 27.873 hybrid contribution 0.444 1.023 0.540 1.239 sum 28.045 1.376 4.414 28.423 Atomic orbital electron populations 1.69801 1.08131 1.29379 1.49953 1.26114 0.96481 1.02662 0.95840 0.85387 0.79553 0.76665 0.80084 1.18089 1.19582 1.15401 1.19006 0.81299 0.95051 1.50796 0.92801 1.41972 1.05905 1.07285 1.67944 1.20654 0.90376 0.83438 0.81559 1.90539 1.71165 1.32964 1.54562 1.22133 0.91500 0.91491 1.05038 1.71836 1.14313 1.19283 1.18170 1.25176 0.86331 0.98534 0.90145 1.20508 0.95262 1.00993 0.98361 1.21187 0.99776 0.94789 0.94977 1.21456 0.92152 1.00158 1.01824 1.18841 0.89687 0.94156 0.90825 1.84684 1.64272 1.23552 1.58582 1.19091 0.87257 0.99633 0.93907 1.84856 1.14086 1.65177 1.66090 1.18574 0.90617 0.93676 0.88433 1.84821 1.78975 1.37744 1.28678 0.90988 0.77469 0.87598 0.86569 0.78811 0.85378 0.82828 0.72611 0.73355 0.72346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.88 13.96 21.66 0.30 -56.58 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 3 Si 0.96 39.10 27.74 68.60 1.90 41.00 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 6 H -0.23 -7.84 6.52 99.48 0.65 -7.19 16 7 C -0.33 -20.10 10.16 84.04 0.85 -19.24 16 8 H 0.05 3.88 7.39 -2.91 -0.02 3.86 16 9 N -0.59 -29.10 5.09 -306.98 -1.56 -30.67 16 10 C 0.45 22.17 7.85 87.66 0.69 22.86 16 11 O -0.61 -36.77 16.01 -3.09 -0.05 -36.82 16 12 C 0.03 1.03 5.86 85.64 0.50 1.54 16 13 N -0.53 -18.05 10.00 -344.70 -3.45 -21.49 16 14 C 0.21 4.78 10.50 87.39 0.92 5.70 16 15 C -0.15 -2.89 5.32 -20.05 -0.11 -3.00 16 16 C -0.09 -1.75 7.78 22.53 0.18 -1.58 16 17 C -0.14 -2.29 9.96 22.32 0.22 -2.07 16 18 C 0.11 1.79 6.72 22.65 0.15 1.94 16 19 O -0.50 -6.78 13.26 -77.71 -1.03 -7.81 16 20 C 0.05 0.77 6.72 22.59 0.15 0.92 16 21 O -0.49 -6.91 13.06 -70.35 -0.92 -7.82 16 22 C 0.14 2.25 6.73 22.88 0.15 2.40 16 23 O -0.49 -6.61 12.71 -77.37 -0.98 -7.59 16 24 H 0.28 15.55 8.31 -92.70 -0.77 14.78 16 25 H 0.39 15.83 5.76 -92.70 -0.53 15.29 16 26 H 0.11 3.05 4.39 -2.39 -0.01 3.04 16 27 H 0.12 3.50 8.14 -2.39 -0.02 3.48 16 28 H 0.20 3.02 8.03 -2.91 -0.02 3.00 16 29 H 0.13 2.91 6.42 -2.91 -0.02 2.90 16 30 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.41 2.43 9.06 -74.06 -0.67 1.76 16 32 H 0.41 1.98 9.07 -74.05 -0.67 1.31 16 33 H 0.42 1.03 9.06 -74.06 -0.67 0.35 16 Total: -1.00 -90.15 299.34 -2.98 -93.13 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -1.37 Total: 25.39 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 4.18 Total: 9.25 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -4.71 Total: -108.74 kcal Atomic # 8 Polarization: -57.06 SS G_CDS: -2.98 Total: -60.04 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 1.90 Total: 41.00 kcal Total: -90.15 -2.98 -93.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345367994.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.396 kcal (2) G-P(sol) polarization free energy of solvation -90.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds