Wall clock time and date at job start Tue Mar 31 2020 01:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47499 * 2 1 4 4 C 1.50700 * 109.47244 * 120.00075 * 2 1 3 5 5 O 1.20823 * 120.00658 * 119.99380 * 4 2 1 6 6 O 1.34238 * 119.99613 * 299.99909 * 4 2 1 7 7 C 1.45204 * 116.99974 * 179.97438 * 6 4 2 8 8 H 1.08997 * 109.46844 * 330.00317 * 7 6 4 9 9 C 1.50702 * 109.47064 * 210.00105 * 7 6 4 10 10 H 1.08003 * 119.99700 * 0.02562 * 9 7 6 11 11 C 1.37873 * 119.99831 * 179.97438 * 9 7 6 12 12 N 1.31514 * 120.00337 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99905 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47013 * 90.00218 * 13 11 9 15 15 H 1.48509 * 109.46945 * 210.00304 * 13 11 9 16 16 H 1.48497 * 109.47052 * 330.00019 * 13 11 9 17 17 C 1.52996 * 109.46855 * 90.00152 * 7 6 4 18 18 C 1.53002 * 117.49888 * 231.25352 * 17 7 6 19 19 C 1.53000 * 117.50107 * 299.91114 * 17 7 6 20 20 C 1.50701 * 109.47297 * 239.99551 * 2 1 3 21 21 C 1.38426 * 122.53676 * 119.73743 * 20 2 1 22 22 C 1.33392 * 114.92039 * 179.76147 * 21 20 2 23 23 S 1.75891 * 109.59191 * 0.47888 * 22 21 20 24 24 C 1.33393 * 122.54153 * 300.02651 * 20 2 1 25 25 H 1.08998 * 109.47028 * 300.00268 * 1 2 3 26 26 H 1.09002 * 109.46851 * 60.00227 * 1 2 3 27 27 H 1.08999 * 109.47355 * 179.97438 * 1 2 3 28 28 H 0.96991 * 120.00328 * 179.97438 * 12 11 9 29 29 H 1.09002 * 115.54951 * 85.58326 * 17 7 6 30 30 H 1.09000 * 117.49996 * 215.00804 * 18 17 7 31 31 H 1.08999 * 117.49664 * 0.02562 * 18 17 7 32 32 H 1.09008 * 117.49673 * 359.97438 * 19 17 7 33 33 H 1.08999 * 117.49959 * 144.99502 * 19 17 7 34 34 H 1.07996 * 122.54085 * 0.02562 * 21 20 2 35 35 H 1.07997 * 125.20965 * 180.20463 * 22 21 20 36 36 H 1.08002 * 125.19844 * 359.97438 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7269 -1.6928 1.1197 6 8 1.7080 -0.2517 2.4496 7 6 2.2267 -0.9862 3.5898 8 1 2.3402 -2.0372 3.3238 9 6 1.2683 -0.8613 4.7460 10 1 0.3600 -0.2876 4.6349 11 6 1.5505 -1.4802 5.9453 12 7 2.6563 -2.1792 6.0804 13 14 0.3622 -1.3259 7.3783 14 1 -0.6255 -2.4334 7.3238 15 1 1.1158 -1.3970 8.6561 16 1 -0.3481 -0.0245 7.2944 17 6 3.5870 -0.4118 3.9904 18 6 4.7496 -1.3938 4.1487 19 6 4.7045 -0.4480 2.9460 20 6 2.0323 -0.7105 -1.2304 21 6 2.8263 -0.0875 -2.1779 22 6 3.1885 -0.8598 -3.2034 23 16 2.4984 -2.4655 -3.0050 24 6 1.7410 -1.9857 -1.4918 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.8550 -2.6143 6.9241 29 1 3.5557 0.4441 4.6646 30 1 5.4832 -1.1839 4.9271 31 1 4.5454 -2.4489 3.9670 32 1 4.4707 -0.8814 1.9735 33 1 5.4084 0.3842 2.9331 34 1 3.1329 0.9444 -2.0911 35 1 3.8069 -0.5460 -4.0313 36 1 1.1334 -2.6257 -0.8692 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345978082.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:18 Heat of formation + Delta-G solvation = -32.579132 kcal Electronic energy + Delta-G solvation = -19893.428163 eV Core-core repulsion = 16856.286720 eV Total energy + Delta-G solvation = -3037.141443 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.00257 -38.10800 -36.21534 -34.82140 -33.00139 -32.61120 -28.79035 -27.78917 -25.26961 -23.71906 -22.69790 -21.23398 -20.40685 -19.17249 -18.47363 -17.70761 -17.00388 -16.34881 -15.65163 -15.26742 -14.81092 -14.50120 -13.91315 -13.64051 -13.08221 -12.93151 -12.70871 -12.61396 -12.29458 -12.07865 -11.60488 -11.49530 -11.26529 -11.19099 -11.05679 -10.89176 -10.62011 -10.39537 -10.26504 -9.82232 -9.55322 -9.30370 -9.00523 -8.68097 -8.62397 -8.42222 -8.31700 -6.14225 -4.22180 1.11048 1.73639 2.04955 2.71039 3.03551 3.25265 3.31439 3.34740 3.77441 4.35578 4.80499 4.99395 5.08613 5.17863 5.26855 5.34217 5.38891 5.64427 5.76369 5.89993 5.92361 5.98134 6.11839 6.18482 6.27741 6.40016 6.46160 6.57656 6.58736 6.72639 7.02482 7.18617 7.29778 7.43079 7.64749 7.87843 8.14111 8.67557 8.92156 9.42574 10.92490 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.026577 B = 0.004641 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.285941 B = 6032.252991 C = 6448.054661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.026 4.026 3 H 0.109 0.891 4 C 0.457 3.543 5 O -0.511 6.511 6 O -0.350 6.350 7 C 0.249 3.751 8 H 0.047 0.953 9 C -0.527 4.527 10 H 0.069 0.931 11 C 0.069 3.931 12 N -0.873 5.873 13 Si 0.905 3.095 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.272 1.272 17 C -0.114 4.114 18 C -0.124 4.124 19 C -0.229 4.229 20 C -0.095 4.095 21 C -0.120 4.120 22 C -0.220 4.220 23 S 0.085 5.915 24 C -0.169 4.169 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.264 0.736 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.140 0.860 35 H 0.162 0.838 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 3.578 -15.086 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.048 4.048 3 H 0.127 0.873 4 C 0.299 3.701 5 O -0.400 6.400 6 O -0.266 6.266 7 C 0.197 3.803 8 H 0.065 0.935 9 C -0.565 4.565 10 H 0.087 0.913 11 C -0.135 4.135 12 N -0.509 5.509 13 Si 0.733 3.267 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.196 1.196 17 C -0.133 4.133 18 C -0.161 4.161 19 C -0.266 4.266 20 C -0.107 4.107 21 C -0.151 4.151 22 C -0.356 4.356 23 S 0.348 5.652 24 C -0.304 4.304 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.157 0.843 35 H 0.179 0.821 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.494 1.810 -15.784 15.895 hybrid contribution -0.260 1.222 1.820 2.208 sum -0.754 3.032 -13.964 14.309 Atomic orbital electron populations 1.21752 0.91568 1.03012 1.03187 1.19611 0.97902 0.99723 0.87596 0.87278 1.23130 0.77902 0.83007 0.86062 1.90583 1.35702 1.26155 1.87570 1.86475 1.68787 1.56590 1.14748 1.20187 0.89780 0.91015 0.79340 0.93521 1.20907 1.06285 1.33971 0.95343 0.91329 1.24875 0.95588 0.94671 0.98377 1.70046 1.23480 1.31623 1.25751 0.86380 0.80580 0.78683 0.81104 1.20497 1.21058 1.19641 1.22593 0.90633 1.00918 0.99166 1.22356 1.00228 0.96550 0.96963 1.23284 1.04334 1.03071 0.95940 1.18420 1.01156 0.94203 0.96875 1.20026 0.99687 1.01300 0.94082 1.25447 1.08730 0.96762 1.04614 1.84142 1.47923 1.13410 1.19711 1.25399 1.06212 0.99019 0.99815 0.90433 0.91546 0.92165 0.92655 0.89399 0.90842 0.89395 0.88781 0.91127 0.84262 0.82053 0.82005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.95 37.16 0.33 -1.44 16 2 C -0.03 -0.40 3.08 -92.92 -0.29 -0.68 16 3 H 0.11 1.42 8.03 -51.93 -0.42 1.01 16 4 C 0.46 9.23 6.38 36.01 0.23 9.46 16 5 O -0.51 -11.56 12.28 -18.75 -0.23 -11.79 16 6 O -0.35 -8.08 9.75 -39.28 -0.38 -8.47 16 7 C 0.25 6.51 2.25 -27.88 -0.06 6.45 16 8 H 0.05 1.36 6.91 -51.93 -0.36 1.00 16 9 C -0.53 -14.50 8.88 -34.44 -0.31 -14.81 16 10 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 11 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 12 N -0.87 -24.19 11.43 55.43 0.63 -23.56 16 13 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 C -0.11 -2.81 4.47 -90.62 -0.41 -3.22 16 18 C -0.12 -2.89 9.04 -26.69 -0.24 -3.14 16 19 C -0.23 -5.02 9.80 -26.70 -0.26 -5.28 16 20 C -0.09 -1.36 4.28 -106.25 -0.46 -1.81 16 21 C -0.12 -1.49 9.92 -41.21 -0.41 -1.89 16 22 C -0.22 -2.49 11.23 29.04 0.33 -2.16 16 23 S 0.08 1.02 23.34 -107.50 -2.51 -1.48 16 24 C -0.17 -2.43 9.26 29.04 0.27 -2.16 16 25 H 0.08 1.04 8.11 -51.93 -0.42 0.61 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.79 7.74 -51.93 -0.40 0.39 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.09 2.23 8.11 -51.93 -0.42 1.80 16 30 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 31 H 0.09 2.20 8.05 -51.93 -0.42 1.78 16 32 H 0.09 2.15 5.37 -51.92 -0.28 1.87 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.16 2.37 7.94 -52.49 -0.42 1.96 16 LS Contribution 317.45 15.07 4.78 4.78 Total: -1.00 -29.70 317.45 -8.88 -38.58 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -4.79 Total: 5.06 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -1.36 Total: -18.91 kcal Atomic # 7 Polarization: -24.19 SS G_CDS: 0.63 Total: -23.56 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.61 Total: -20.26 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.51 Total: -1.48 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.70 -8.88 -38.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345978082.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.001 kcal (2) G-P(sol) polarization free energy of solvation -29.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds