Wall clock time and date at job start Tue Mar 31 2020 01:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47499 * 2 1 4 4 C 1.50700 * 109.47244 * 120.00075 * 2 1 3 5 5 O 1.20823 * 120.00658 * 119.99380 * 4 2 1 6 6 O 1.34238 * 119.99613 * 299.99909 * 4 2 1 7 7 C 1.45204 * 116.99974 * 179.97438 * 6 4 2 8 8 H 1.08997 * 109.46844 * 330.00317 * 7 6 4 9 9 C 1.50702 * 109.47064 * 210.00105 * 7 6 4 10 10 H 1.08003 * 119.99700 * 0.02562 * 9 7 6 11 11 C 1.37873 * 119.99831 * 179.97438 * 9 7 6 12 12 N 1.31514 * 120.00337 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99905 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47013 * 90.00218 * 13 11 9 15 15 H 1.48509 * 109.46945 * 210.00304 * 13 11 9 16 16 H 1.48497 * 109.47052 * 330.00019 * 13 11 9 17 17 C 1.52996 * 109.46855 * 90.00152 * 7 6 4 18 18 C 1.53002 * 117.49888 * 231.25352 * 17 7 6 19 19 C 1.53000 * 117.50107 * 299.91114 * 17 7 6 20 20 C 1.50701 * 109.47297 * 239.99551 * 2 1 3 21 21 C 1.38426 * 122.53676 * 119.73743 * 20 2 1 22 22 C 1.33392 * 114.92039 * 179.76147 * 21 20 2 23 23 S 1.75891 * 109.59191 * 0.47888 * 22 21 20 24 24 C 1.33393 * 122.54153 * 300.02651 * 20 2 1 25 25 H 1.08998 * 109.47028 * 300.00268 * 1 2 3 26 26 H 1.09002 * 109.46851 * 60.00227 * 1 2 3 27 27 H 1.08999 * 109.47355 * 179.97438 * 1 2 3 28 28 H 0.96991 * 120.00328 * 179.97438 * 12 11 9 29 29 H 1.09002 * 115.54951 * 85.58326 * 17 7 6 30 30 H 1.09000 * 117.49996 * 215.00804 * 18 17 7 31 31 H 1.08999 * 117.49664 * 0.02562 * 18 17 7 32 32 H 1.09008 * 117.49673 * 359.97438 * 19 17 7 33 33 H 1.08999 * 117.49959 * 144.99502 * 19 17 7 34 34 H 1.07996 * 122.54085 * 0.02562 * 21 20 2 35 35 H 1.07997 * 125.20965 * 180.20463 * 22 21 20 36 36 H 1.08002 * 125.19844 * 359.97438 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7269 -1.6928 1.1197 6 8 1.7080 -0.2517 2.4496 7 6 2.2267 -0.9862 3.5898 8 1 2.3402 -2.0372 3.3238 9 6 1.2683 -0.8613 4.7460 10 1 0.3600 -0.2876 4.6349 11 6 1.5505 -1.4802 5.9453 12 7 2.6563 -2.1792 6.0804 13 14 0.3622 -1.3259 7.3783 14 1 -0.6255 -2.4334 7.3238 15 1 1.1158 -1.3970 8.6561 16 1 -0.3481 -0.0245 7.2944 17 6 3.5870 -0.4118 3.9904 18 6 4.7496 -1.3938 4.1487 19 6 4.7045 -0.4480 2.9460 20 6 2.0323 -0.7105 -1.2304 21 6 2.8263 -0.0875 -2.1779 22 6 3.1885 -0.8598 -3.2034 23 16 2.4984 -2.4655 -3.0050 24 6 1.7410 -1.9857 -1.4918 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.8550 -2.6143 6.9241 29 1 3.5557 0.4441 4.6646 30 1 5.4832 -1.1839 4.9271 31 1 4.5454 -2.4489 3.9670 32 1 4.4707 -0.8814 1.9735 33 1 5.4084 0.3842 2.9331 34 1 3.1329 0.9444 -2.0911 35 1 3.8069 -0.5460 -4.0313 36 1 1.1334 -2.6257 -0.8692 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345978082.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:17 Heat of formation + Delta-G solvation = -47.173250 kcal Electronic energy + Delta-G solvation = -19894.061011 eV Core-core repulsion = 16856.286720 eV Total energy + Delta-G solvation = -3037.774291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.59619 -39.39090 -37.94650 -36.62899 -34.71359 -34.11856 -30.05723 -29.54417 -26.43475 -25.46890 -24.17583 -23.08620 -21.91216 -21.00920 -19.63002 -18.87260 -18.75580 -18.05400 -17.22119 -16.99669 -16.53276 -15.91249 -15.58290 -14.95180 -14.59960 -14.37980 -14.02294 -13.69289 -13.67578 -13.31920 -13.21615 -13.04896 -12.93108 -12.79609 -12.53720 -12.39663 -12.24146 -12.15848 -11.79203 -11.61207 -11.36264 -11.07935 -10.91761 -10.58996 -10.43075 -9.66531 -9.30581 -8.20901 -6.37798 0.11600 0.76389 1.09098 1.41632 1.42879 1.44029 1.54106 1.63580 2.21875 2.47652 3.06593 3.23796 3.69512 3.89934 4.07106 4.13829 4.25447 4.27810 4.31123 4.44470 4.52363 4.67766 4.77067 4.79782 4.87072 4.90030 5.10576 5.14899 5.23725 5.26735 5.38625 5.45550 5.50312 5.55936 5.59548 5.88157 6.18862 6.66437 7.06949 7.32837 8.85330 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.026577 B = 0.004641 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.285941 B = 6032.252991 C = 6448.054661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.018 4.018 3 H 0.135 0.865 4 C 0.451 3.549 5 O -0.539 6.539 6 O -0.358 6.358 7 C 0.255 3.745 8 H 0.004 0.996 9 C -0.554 4.554 10 H 0.064 0.936 11 C 0.026 3.974 12 N -0.896 5.896 13 Si 0.973 3.027 14 H -0.275 1.275 15 H -0.278 1.278 16 H -0.264 1.264 17 C -0.130 4.130 18 C -0.125 4.125 19 C -0.199 4.199 20 C -0.102 4.102 21 C -0.135 4.135 22 C -0.208 4.208 23 S 0.100 5.900 24 C -0.200 4.200 25 H 0.070 0.930 26 H 0.099 0.901 27 H 0.049 0.951 28 H 0.266 0.734 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.164 0.836 35 H 0.194 0.806 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.650 5.192 -16.199 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.040 4.040 3 H 0.153 0.847 4 C 0.295 3.705 5 O -0.430 6.430 6 O -0.275 6.275 7 C 0.202 3.798 8 H 0.022 0.978 9 C -0.592 4.592 10 H 0.083 0.917 11 C -0.176 4.176 12 N -0.532 5.532 13 Si 0.797 3.203 14 H -0.201 1.201 15 H -0.203 1.203 16 H -0.189 1.189 17 C -0.149 4.149 18 C -0.162 4.162 19 C -0.235 4.235 20 C -0.114 4.114 21 C -0.164 4.164 22 C -0.343 4.343 23 S 0.363 5.637 24 C -0.336 4.336 25 H 0.089 0.911 26 H 0.118 0.882 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.182 0.818 35 H 0.212 0.788 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.279 3.426 -16.923 17.269 hybrid contribution -0.307 0.655 2.066 2.189 sum -0.586 4.082 -14.857 15.419 Atomic orbital electron populations 1.21759 0.90089 1.02796 1.04446 1.19747 0.99047 1.00221 0.84976 0.84715 1.24265 0.77092 0.82858 0.86313 1.90564 1.37071 1.27564 1.87773 1.86467 1.69176 1.56380 1.15436 1.19793 0.90725 0.89161 0.80098 0.97820 1.21188 1.06762 1.34743 0.96482 0.91736 1.25705 0.97227 0.93959 1.00750 1.70163 1.24841 1.31807 1.26407 0.85340 0.78418 0.78890 0.77685 1.20062 1.20315 1.18866 1.22416 0.90616 1.01075 1.00810 1.22270 1.00160 0.95233 0.98516 1.23258 1.02849 1.02917 0.94519 1.18554 1.01703 0.94251 0.96907 1.20235 0.99688 1.02664 0.93848 1.25887 1.07781 0.95666 1.04974 1.84072 1.47378 1.14245 1.17963 1.25449 1.07348 0.99474 1.01310 0.91097 0.88247 0.93189 0.92467 0.90167 0.89320 0.91909 0.89711 0.87846 0.81823 0.78841 0.83647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.95 71.98 0.64 -2.68 16 2 C -0.02 -0.54 3.08 -12.29 -0.04 -0.57 16 3 H 0.14 3.20 8.03 -2.39 -0.02 3.18 16 4 C 0.45 18.53 6.38 71.24 0.45 18.99 16 5 O -0.54 -25.26 12.28 21.97 0.27 -24.99 16 6 O -0.36 -16.99 9.75 -51.49 -0.50 -17.49 16 7 C 0.26 13.85 2.25 29.85 0.07 13.91 16 8 H 0.00 0.25 6.91 -2.39 -0.02 0.23 16 9 C -0.55 -31.31 8.88 25.60 0.23 -31.08 16 10 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 11 C 0.03 1.40 5.30 84.65 0.45 1.85 16 12 N -0.90 -50.61 11.43 21.45 0.25 -50.37 16 13 Si 0.97 42.86 29.54 68.60 2.03 44.88 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 16 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 17 C -0.13 -6.51 4.47 -10.79 -0.05 -6.56 16 18 C -0.12 -5.90 9.04 30.62 0.28 -5.62 16 19 C -0.20 -8.57 9.80 30.62 0.30 -8.27 16 20 C -0.10 -2.78 4.28 -20.92 -0.09 -2.87 16 21 C -0.13 -2.95 9.92 21.22 0.21 -2.74 16 22 C -0.21 -4.06 11.23 66.72 0.75 -3.31 16 23 S 0.10 2.28 23.34 -56.49 -1.32 0.96 16 24 C -0.20 -5.76 9.26 66.72 0.62 -5.14 16 25 H 0.07 1.85 8.11 -2.39 -0.02 1.83 16 26 H 0.10 1.82 8.14 -2.39 -0.02 1.81 16 27 H 0.05 1.33 7.74 -2.39 -0.02 1.31 16 28 H 0.27 14.21 8.31 -92.72 -0.77 13.44 16 29 H 0.08 4.10 8.11 -2.39 -0.02 4.08 16 30 H 0.09 3.87 8.14 -2.39 -0.02 3.85 16 31 H 0.06 3.27 8.05 -2.39 -0.02 3.25 16 32 H 0.08 3.86 5.37 -2.38 -0.01 3.84 16 33 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 34 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.19 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.15 4.53 7.94 -2.91 -0.02 4.51 16 Total: -1.00 -65.81 317.45 5.62 -60.20 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 1.07 Total: 20.90 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 3.82 Total: -34.10 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.25 Total: -50.37 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -0.23 Total: -42.48 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -1.32 Total: 0.96 kcal Total: -65.81 5.62 -60.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345978082.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.024 kcal (2) G-P(sol) polarization free energy of solvation -65.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds