Wall clock time and date at job start Tue Mar 31 2020 01:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46988 * 2 1 4 4 C 1.50697 * 109.47185 * 239.99946 * 2 1 3 5 5 O 1.20827 * 119.99984 * 239.99671 * 4 2 1 6 6 O 1.34230 * 119.99998 * 59.99829 * 4 2 1 7 7 C 1.45195 * 116.99758 * 179.97438 * 6 4 2 8 8 H 1.08994 * 109.47567 * 30.00258 * 7 6 4 9 9 C 1.50700 * 109.46887 * 150.00288 * 7 6 4 10 10 H 1.08001 * 120.00292 * 85.12824 * 9 7 6 11 11 C 1.37885 * 119.99925 * 265.13095 * 9 7 6 12 12 N 1.31515 * 119.99953 * 184.99403 * 11 9 7 13 13 Si 1.86802 * 119.99836 * 5.00095 * 11 9 7 14 14 H 1.48501 * 109.47223 * 84.70034 * 13 11 9 15 15 H 1.48496 * 109.46664 * 204.70481 * 13 11 9 16 16 H 1.48498 * 109.46795 * 324.70201 * 13 11 9 17 17 C 1.53004 * 109.47102 * 269.99835 * 7 6 4 18 18 C 1.52998 * 117.49611 * 134.00707 * 17 7 6 19 19 C 1.52993 * 117.49900 * 65.34488 * 17 7 6 20 20 C 1.50700 * 109.46985 * 119.99655 * 2 1 3 21 21 C 1.38427 * 122.53966 * 239.99687 * 20 2 1 22 22 C 1.33394 * 114.92184 * 179.73149 * 21 20 2 23 23 S 1.75885 * 109.59009 * 0.27581 * 22 21 20 24 24 C 1.33392 * 122.54152 * 60.26277 * 20 2 1 25 25 H 1.09004 * 109.47270 * 299.99877 * 1 2 3 26 26 H 1.08994 * 109.47264 * 59.99692 * 1 2 3 27 27 H 1.09001 * 109.47186 * 180.02562 * 1 2 3 28 28 H 0.97000 * 119.99365 * 179.97438 * 12 11 9 29 29 H 1.08998 * 115.54900 * 279.67320 * 17 7 6 30 30 H 1.09005 * 117.50234 * 359.97438 * 18 17 7 31 31 H 1.08996 * 117.50366 * 145.02257 * 18 17 7 32 32 H 1.08994 * 117.50276 * 214.97946 * 19 17 7 33 33 H 1.09000 * 117.49714 * 359.97438 * 19 17 7 34 34 H 1.08000 * 122.54070 * 0.02562 * 21 20 2 35 35 H 1.07998 * 125.20144 * 180.25625 * 22 21 20 36 36 H 1.07994 * 125.19782 * 359.96575 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7270 -1.6927 -1.1195 6 8 1.7080 -0.2518 -2.4496 7 6 2.2277 -0.9857 -3.5895 8 1 2.3419 -2.0366 -3.3238 9 6 1.2696 -0.8613 -4.7461 10 1 1.3257 -0.0070 -5.4044 11 6 0.3212 -1.8383 -4.9639 12 7 -0.4497 -1.7808 -6.0278 13 14 0.1313 -3.2432 -3.7475 14 1 -0.7578 -2.8191 -2.6362 15 1 -0.4625 -4.4172 -4.4362 16 1 1.4633 -3.6101 -3.2033 17 6 3.5877 -0.4101 -3.9897 18 6 4.7198 -1.4009 -4.2679 19 6 4.7379 -0.5560 -2.9916 20 6 2.0323 -0.7103 1.2305 21 6 2.8306 -0.0888 2.1753 22 6 3.1833 -0.8578 3.2067 23 16 2.4955 -2.4642 3.0069 24 6 1.7456 -1.9871 1.4893 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -1.1166 -2.4683 -6.1811 29 1 3.5551 0.4986 -4.5908 30 1 4.4960 -2.4628 -4.1654 31 1 5.4324 -1.1438 -5.0516 32 1 5.4623 0.2565 -2.9361 33 1 4.5257 -1.0617 -2.0496 34 1 3.1404 0.9420 2.0866 35 1 3.7975 -0.5422 4.0371 36 1 1.1414 -2.6283 0.8647 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345978083.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:20 Heat of formation + Delta-G solvation = -33.051131 kcal Electronic energy + Delta-G solvation = -20108.928251 eV Core-core repulsion = 17071.766340 eV Total energy + Delta-G solvation = -3037.161910 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.00993 -38.15902 -36.46065 -34.93210 -33.04687 -32.72598 -28.91731 -28.39732 -25.25553 -23.62930 -22.77685 -21.70241 -20.44537 -19.32801 -18.50029 -17.72035 -17.31110 -16.54600 -15.83907 -15.53013 -14.76524 -14.64853 -13.88624 -13.75828 -13.19611 -12.98240 -12.79299 -12.65040 -12.44386 -12.29989 -11.74252 -11.62225 -11.45120 -11.39934 -11.17955 -10.99089 -10.78412 -10.62790 -10.21931 -9.77873 -9.65618 -9.38695 -9.18396 -8.96259 -8.86173 -8.69457 -8.33478 -6.38863 -4.45264 1.09505 1.71902 2.03304 2.69997 3.02210 3.15458 3.22968 3.30557 3.70806 4.19507 4.58875 4.81406 4.96831 5.08622 5.28697 5.35434 5.38557 5.47592 5.64163 5.70208 5.70422 5.85019 5.92419 6.01951 6.12883 6.21330 6.25866 6.34873 6.46726 6.53178 6.57700 6.67176 6.78561 7.01073 7.37995 7.66586 8.22816 8.70735 8.79521 9.21742 10.70800 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.019321 B = 0.006122 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.863303 B = 4572.541509 C = 5146.148429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 H 0.110 0.890 4 C 0.450 3.550 5 O -0.521 6.521 6 O -0.352 6.352 7 C 0.194 3.806 8 H 0.061 0.939 9 C -0.499 4.499 10 H 0.085 0.915 11 C 0.088 3.912 12 N -0.870 5.870 13 Si 0.865 3.135 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.254 1.254 17 C -0.134 4.134 18 C -0.170 4.170 19 C -0.203 4.203 20 C -0.094 4.094 21 C -0.120 4.120 22 C -0.220 4.220 23 S 0.083 5.917 24 C -0.171 4.171 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.272 0.728 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.140 0.860 35 H 0.162 0.838 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.672 2.266 15.762 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.053 4.053 3 H 0.128 0.872 4 C 0.293 3.707 5 O -0.412 6.412 6 O -0.269 6.269 7 C 0.143 3.857 8 H 0.078 0.922 9 C -0.535 4.535 10 H 0.103 0.897 11 C -0.119 4.119 12 N -0.506 5.506 13 Si 0.691 3.309 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.179 1.179 17 C -0.153 4.153 18 C -0.207 4.207 19 C -0.240 4.240 20 C -0.105 4.105 21 C -0.150 4.150 22 C -0.355 4.355 23 S 0.346 5.654 24 C -0.306 4.306 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.121 0.879 34 H 0.158 0.842 35 H 0.180 0.820 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.777 0.534 16.478 17.165 hybrid contribution -0.084 0.471 -0.368 0.604 sum 4.692 1.005 16.111 16.810 Atomic orbital electron populations 1.21762 0.91635 1.02957 1.03330 1.19714 0.97933 0.99805 0.87899 0.87246 1.23368 0.77625 0.83063 0.86616 1.90540 1.36389 1.26426 1.87852 1.87018 1.68431 1.57518 1.13886 1.20870 0.90504 0.92505 0.81781 0.92178 1.20910 1.16208 1.09334 1.07063 0.89698 1.25137 0.94209 0.97837 0.94744 1.69875 1.20341 1.34626 1.25780 0.87007 0.79824 0.82110 0.81944 1.19449 1.20681 1.17853 1.22590 0.90376 1.00690 1.01649 1.22780 1.01691 0.97425 0.98850 1.23190 1.02478 1.02967 0.95402 1.18460 1.00942 0.94136 0.96991 1.20025 0.99657 1.01307 0.94032 1.25442 1.08824 0.96821 1.04447 1.84126 1.48491 1.13409 1.19332 1.25386 1.06336 0.99063 0.99830 0.91516 0.90215 0.92404 0.91825 0.88163 0.89290 0.89450 0.90158 0.87862 0.84243 0.82042 0.82206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.96 37.16 0.33 -1.67 16 2 C -0.03 -0.49 3.08 -92.93 -0.29 -0.78 16 3 H 0.11 1.47 8.03 -51.93 -0.42 1.05 16 4 C 0.45 9.19 6.61 36.00 0.24 9.43 16 5 O -0.52 -11.63 12.17 -18.75 -0.23 -11.86 16 6 O -0.35 -8.12 9.77 -39.26 -0.38 -8.50 16 7 C 0.19 4.78 1.72 -27.88 -0.05 4.73 16 8 H 0.06 1.57 3.96 -51.93 -0.21 1.37 16 9 C -0.50 -13.84 9.24 -34.44 -0.32 -14.16 16 10 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 11 C 0.09 2.46 5.47 -17.82 -0.10 2.37 16 12 N -0.87 -25.34 13.96 55.43 0.77 -24.57 16 13 Si 0.87 21.42 27.58 -169.99 -4.69 16.73 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.25 -6.35 6.06 56.52 0.34 -6.01 16 17 C -0.13 -2.91 5.34 -90.62 -0.48 -3.39 16 18 C -0.17 -3.28 10.18 -26.69 -0.27 -3.55 16 19 C -0.20 -3.88 9.82 -26.70 -0.26 -4.14 16 20 C -0.09 -1.38 4.29 -106.25 -0.46 -1.84 16 21 C -0.12 -1.49 9.92 -41.20 -0.41 -1.90 16 22 C -0.22 -2.50 11.23 29.04 0.33 -2.18 16 23 S 0.08 1.03 23.34 -107.50 -2.51 -1.48 16 24 C -0.17 -2.57 9.25 29.04 0.27 -2.30 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 27 H 0.06 0.87 7.76 -51.93 -0.40 0.47 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.10 2.12 8.14 -51.93 -0.42 1.70 16 30 H 0.09 1.77 8.08 -51.93 -0.42 1.35 16 31 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.10 2.13 5.58 -51.93 -0.29 1.84 16 34 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 36 H 0.16 2.52 7.95 -52.49 -0.42 2.10 16 LS Contribution 316.73 15.07 4.77 4.77 Total: -1.00 -30.28 316.73 -8.46 -38.74 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.73 Total: 5.52 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -1.47 Total: -19.36 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.77 Total: -24.57 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.61 Total: -20.36 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.69 Total: 16.73 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.51 Total: -1.48 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.28 -8.46 -38.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345978083.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.688 kcal (2) G-P(sol) polarization free energy of solvation -30.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds