Wall clock time and date at job start Tue Mar 31 2020 01:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21250 * 119.99892 * 2 1 4 4 C 1.47189 * 119.99839 * 179.97438 * 2 1 3 5 5 C 1.39850 * 120.13515 * 359.97438 * 4 2 1 6 6 C 1.38131 * 119.90851 * 180.02562 * 5 4 2 7 7 F 1.35096 * 119.91057 * 179.97438 * 6 5 4 8 8 C 1.38535 * 120.18437 * 359.97438 * 6 5 4 9 9 C 1.38821 * 120.26873 * 0.02562 * 8 6 5 10 10 O 1.35930 * 119.95614 * 179.97438 * 9 8 6 11 11 C 1.34262 * 117.00233 * 249.00676 * 10 9 8 12 12 O 1.20828 * 119.99883 * 5.77106 * 11 10 9 13 13 C 1.50706 * 120.00010 * 185.77937 * 11 10 9 14 14 C 1.53002 * 109.46809 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.46811 * 179.97438 * 14 13 11 16 16 H 1.08004 * 120.00521 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99694 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00351 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99856 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47193 * 60.00057 * 19 17 15 21 21 H 1.48496 * 109.47250 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47145 * 299.99925 * 19 17 15 23 23 C 1.38426 * 120.08905 * 359.97438 * 9 8 6 24 24 H 1.09004 * 109.47500 * 240.00538 * 1 2 3 25 25 H 1.09001 * 109.47538 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47499 * 120.00597 * 1 2 3 27 27 H 1.08004 * 120.04500 * 359.97438 * 5 4 2 28 28 H 1.07997 * 119.86923 * 179.97438 * 8 6 5 29 29 H 1.08999 * 109.46866 * 299.99088 * 13 11 10 30 30 H 1.08994 * 109.47312 * 59.99521 * 13 11 10 31 31 H 1.08999 * 109.46915 * 299.99368 * 14 13 11 32 32 H 1.08997 * 109.47105 * 59.99354 * 14 13 11 33 33 H 0.96996 * 120.00471 * 180.02562 * 18 17 15 34 34 H 1.08000 * 120.09712 * 180.27804 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5464 -2.4875 0.0017 6 6 2.2418 -3.6810 0.0027 7 9 1.5691 -4.8526 0.0043 8 6 3.6271 -3.6800 0.0022 9 6 4.3260 -2.4806 0.0011 10 8 5.6853 -2.4870 0.0011 11 6 6.2969 -2.0603 1.1176 12 8 5.6449 -1.7924 2.0989 13 6 7.7967 -1.9154 1.1468 14 6 8.2341 -1.4165 2.5255 15 6 9.7338 -1.2722 2.5548 16 1 10.3168 -1.5119 1.6778 17 6 10.3618 -0.8331 3.7011 18 7 9.6520 -0.5408 4.7689 19 14 12.2208 -0.6535 3.7374 20 1 12.6442 0.3215 2.7004 21 1 12.6453 -0.1694 5.0755 22 1 12.8507 -1.9705 3.4652 23 6 3.6405 -1.2779 0.0000 24 1 -0.3634 -0.5138 0.8900 25 1 -0.3634 1.0276 0.0005 26 1 -0.3634 -0.5139 -0.8900 27 1 0.4664 -2.4908 0.0025 28 1 4.1657 -4.6161 0.0034 29 1 8.2591 -2.8819 0.9463 30 1 8.1074 -1.1992 0.3862 31 1 7.7717 -0.4499 2.7255 32 1 7.9232 -2.1324 3.2863 33 1 10.0937 -0.2315 5.5752 34 1 4.1841 -0.3447 -0.0053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346152278.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:50 Heat of formation + Delta-G solvation = -143.673127 kcal Electronic energy + Delta-G solvation = -20608.048626 eV Core-core repulsion = 16999.876610 eV Total energy + Delta-G solvation = -3608.172016 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.24279 -41.27774 -39.91655 -38.15663 -36.56560 -33.68837 -32.20009 -31.29240 -30.60568 -29.53887 -26.32734 -24.49374 -23.72495 -22.04388 -20.60945 -19.82187 -18.21226 -17.41555 -17.27066 -16.71654 -16.29353 -16.02766 -15.87887 -15.64972 -15.26592 -15.21957 -14.88414 -14.52258 -13.77434 -13.42409 -12.83203 -12.81846 -12.64643 -12.40956 -12.31248 -12.24620 -12.07438 -11.35586 -11.15236 -10.97883 -10.71563 -10.23567 -10.14872 -10.12972 -9.74764 -9.31840 -9.26405 -9.00374 -8.42570 -6.06213 -4.11981 0.15284 0.68908 1.91955 2.50203 2.75438 3.30431 3.33995 3.35577 3.37389 3.59828 3.91879 4.38415 4.43737 4.55139 4.63227 4.74226 4.79699 5.02752 5.07244 5.27060 5.29318 5.51718 5.56722 5.59647 5.78890 5.90391 5.98477 6.04933 6.25401 6.60309 6.72636 7.16441 7.58717 7.63473 7.90912 8.07350 8.27876 8.94399 9.52567 11.04658 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.024325 B = 0.003449 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.821578 B = 8117.171143 C = 8847.941456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.396 3.604 3 O -0.444 6.444 4 C -0.129 4.129 5 C -0.115 4.115 6 C 0.105 3.895 7 F -0.131 7.131 8 C -0.129 4.129 9 C 0.118 3.882 10 O -0.301 6.301 11 C 0.455 3.545 12 O -0.481 6.481 13 C -0.099 4.099 14 C 0.032 3.968 15 C -0.532 4.532 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.888 5.888 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.079 4.079 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.263 0.737 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.352 -4.898 -12.227 22.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.273 3.727 3 O -0.318 6.318 4 C -0.130 4.130 5 C -0.134 4.134 6 C 0.085 3.915 7 F -0.110 7.110 8 C -0.148 4.148 9 C 0.076 3.924 10 O -0.218 6.218 11 C 0.299 3.701 12 O -0.363 6.363 13 C -0.137 4.137 14 C -0.005 4.005 15 C -0.570 4.570 16 H 0.078 0.922 17 C -0.142 4.142 18 N -0.526 5.526 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.098 4.098 24 H 0.115 0.885 25 H 0.107 0.893 26 H 0.114 0.886 27 H 0.167 0.833 28 H 0.169 0.831 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.258 -4.238 -11.691 22.090 hybrid contribution 0.798 -0.294 0.152 0.864 sum -17.460 -4.531 -11.539 21.413 Atomic orbital electron populations 1.22253 0.93008 1.05569 1.04742 1.22428 0.91839 0.87057 0.71385 1.90595 1.72142 1.33897 1.35152 1.20158 0.93461 0.94736 1.04658 1.21373 1.01165 0.90119 1.00708 1.17114 0.89268 0.81471 1.03620 1.91542 1.79964 1.45477 1.93972 1.21299 0.92721 0.99444 1.01311 1.18127 0.82718 0.92143 0.99440 1.84786 1.16403 1.78660 1.41955 1.25442 0.93150 0.72296 0.79237 1.90698 1.66965 1.44273 1.34384 1.21880 0.82236 1.04297 1.05248 1.19061 0.96121 0.97553 0.87742 1.21077 0.91396 1.45934 0.98572 0.92235 1.25017 0.98534 0.95154 0.95528 1.69971 1.35661 1.44365 1.02645 0.86580 0.85177 0.78553 0.77228 1.20101 1.21220 1.20125 1.21719 0.93782 0.98656 0.95618 0.88525 0.89309 0.88596 0.83256 0.83147 0.88390 0.88345 0.95433 0.95446 0.92690 0.83550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.20 8.93 36.00 0.32 -0.88 16 2 C 0.40 4.31 7.23 -30.68 -0.22 4.08 16 3 O -0.44 -6.59 17.07 5.58 0.10 -6.50 16 4 C -0.13 -1.48 5.87 -105.09 -0.62 -2.10 16 5 C -0.11 -1.06 9.44 -39.02 -0.37 -1.43 16 6 C 0.10 1.13 7.28 -39.51 -0.29 0.84 16 7 F -0.13 -1.37 17.26 2.25 0.04 -1.33 16 8 C -0.13 -1.58 9.96 -39.26 -0.39 -1.97 16 9 C 0.12 1.72 5.27 -39.30 -0.21 1.52 16 10 O -0.30 -4.86 10.04 -23.63 -0.24 -5.09 16 11 C 0.45 8.66 7.73 36.01 0.28 8.93 16 12 O -0.48 -10.70 15.39 -18.75 -0.29 -10.98 16 13 C -0.10 -1.93 5.75 -27.88 -0.16 -2.09 16 14 C 0.03 0.83 4.26 -27.88 -0.12 0.71 16 15 C -0.53 -14.56 9.11 -34.44 -0.31 -14.88 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 19 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 C -0.08 -1.13 8.87 -38.94 -0.35 -1.47 16 24 H 0.10 0.43 8.08 -51.93 -0.42 0.01 16 25 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 26 H 0.10 0.36 8.09 -51.93 -0.42 -0.06 16 27 H 0.15 0.84 7.04 -52.48 -0.37 0.48 16 28 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 30 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 31 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 32 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.15 2.25 7.65 -52.49 -0.40 1.84 16 LS Contribution 314.63 15.07 4.74 4.74 Total: -1.00 -33.10 314.63 -6.15 -39.25 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -3.68 Total: -3.15 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -2.53 Total: -7.14 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: 0.74 Total: -25.95 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.43 Total: -22.58 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.10 -6.15 -39.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346152278.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.427 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds