Wall clock time and date at job start Tue Mar 31 2020 01:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47154 * 2 1 4 4 C 1.50696 * 109.47380 * 119.99376 * 2 1 3 5 5 O 1.20833 * 119.99655 * 119.99806 * 4 2 1 6 6 O 1.34222 * 120.00432 * 300.28073 * 4 2 1 7 7 C 1.45201 * 117.00137 * 179.71953 * 6 4 2 8 8 H 1.08997 * 109.47182 * 30.00237 * 7 6 4 9 9 C 1.50706 * 109.47038 * 149.99875 * 7 6 4 10 10 H 1.08002 * 119.99636 * 0.02562 * 9 7 6 11 11 C 1.37873 * 119.99798 * 179.97438 * 9 7 6 12 12 N 1.31508 * 120.00508 * 0.02562 * 11 9 7 13 13 Si 1.86809 * 119.99737 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46972 * 0.02562 * 13 11 9 15 15 H 1.48493 * 109.46897 * 120.00388 * 13 11 9 16 16 H 1.48505 * 109.47040 * 240.00267 * 13 11 9 17 17 C 1.53002 * 109.47379 * 269.99835 * 7 6 4 18 18 C 1.52994 * 117.49822 * 128.74610 * 17 7 6 19 19 C 1.52996 * 117.49740 * 60.08536 * 17 7 6 20 20 C 1.50703 * 109.47254 * 240.00051 * 2 1 3 21 21 C 1.33386 * 125.20207 * 119.99713 * 20 2 1 22 22 C 1.38422 * 114.91729 * 179.97438 * 21 20 2 23 23 C 1.33386 * 114.92201 * 359.97438 * 22 21 20 24 24 S 1.75880 * 109.59446 * 359.76525 * 23 22 21 25 25 H 1.08996 * 109.47135 * 59.99931 * 1 2 3 26 26 H 1.08998 * 109.46822 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46756 * 299.99960 * 1 2 3 28 28 H 0.97003 * 120.00681 * 179.97438 * 12 11 9 29 29 H 1.08997 * 115.54755 * 274.41939 * 17 7 6 30 30 H 1.09000 * 117.50252 * 0.02562 * 18 17 7 31 31 H 1.08998 * 117.50017 * 145.02237 * 18 17 7 32 32 H 1.08999 * 117.49955 * 214.97906 * 19 17 7 33 33 H 1.09002 * 117.49566 * 0.02562 * 19 17 7 34 34 H 1.08004 * 122.54388 * 359.97438 * 21 20 2 35 35 H 1.08005 * 122.54197 * 180.02562 * 22 21 20 36 36 H 1.08007 * 125.20326 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7102 1.2305 5 8 2.7271 -1.6927 1.1196 6 8 1.7036 -0.2549 2.4495 7 6 2.2180 -0.9925 3.5896 8 1 3.1717 -1.4497 3.3262 9 6 2.4158 -0.0507 4.7494 10 1 2.1782 0.9972 4.6407 11 6 2.8990 -0.5272 5.9496 12 7 3.1879 -1.8033 6.0822 13 14 3.1435 0.6401 7.3875 14 1 2.7468 2.0129 6.9835 15 1 2.3049 0.1992 8.5309 16 1 4.5726 0.6358 7.7911 17 6 1.2206 -2.0839 3.9832 18 6 1.7571 -3.5081 4.1396 19 6 0.8855 -3.1462 2.9344 20 6 2.0324 -0.7104 -1.2305 21 6 2.8025 -0.1646 -2.1729 22 6 3.1405 -1.0127 -3.2134 23 6 2.6453 -2.2474 -3.1155 24 16 1.7000 -2.3885 -1.6391 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.5282 -2.1385 6.9265 29 1 0.4216 -1.7704 4.6551 30 1 2.8207 -3.6676 3.9624 31 1 1.3108 -4.1318 4.9141 32 1 -0.1338 -3.5319 2.9166 33 1 1.3759 -3.0677 1.9641 34 1 3.1370 0.8614 -2.1277 35 1 3.7590 -0.6988 -4.0413 36 1 2.8044 -3.0406 -3.8312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346705896.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:05 Heat of formation + Delta-G solvation = -46.645168 kcal Electronic energy + Delta-G solvation = -19886.193728 eV Core-core repulsion = 16848.442335 eV Total energy + Delta-G solvation = -3037.751392 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.50921 -38.98615 -38.08351 -36.67635 -34.97641 -34.68260 -30.03426 -29.38316 -26.14296 -25.27208 -24.20867 -23.07986 -21.98308 -21.00214 -20.28410 -19.02096 -18.26574 -17.99557 -17.27848 -16.83854 -16.43751 -16.19047 -15.72161 -15.02108 -14.66186 -14.36552 -13.97059 -13.66855 -13.57014 -13.27882 -13.11427 -13.10421 -12.93396 -12.78433 -12.62585 -12.46065 -12.22912 -12.16725 -11.76200 -11.53934 -11.37383 -11.13505 -10.93685 -10.59744 -10.43651 -9.60097 -9.29769 -8.21538 -6.38461 0.07250 0.76523 1.18440 1.37325 1.42278 1.42908 1.55579 1.77953 2.14905 2.45020 3.06067 3.22648 3.48863 3.90232 4.05966 4.10967 4.22273 4.28469 4.30754 4.44145 4.62673 4.69967 4.73766 4.79254 4.84506 4.87961 5.10876 5.17631 5.23494 5.26079 5.38792 5.39559 5.48771 5.56874 5.62684 5.86532 6.16290 6.65421 7.02445 7.31839 8.84886 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.027790 B = 0.004845 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.325611 B = 5777.629556 C = 6154.761841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.009 4.009 3 H 0.141 0.859 4 C 0.447 3.553 5 O -0.533 6.533 6 O -0.357 6.357 7 C 0.255 3.745 8 H 0.005 0.995 9 C -0.554 4.554 10 H 0.064 0.936 11 C 0.026 3.974 12 N -0.896 5.896 13 Si 0.973 3.027 14 H -0.265 1.265 15 H -0.274 1.274 16 H -0.278 1.278 17 C -0.129 4.129 18 C -0.124 4.124 19 C -0.198 4.198 20 C -0.182 4.182 21 C -0.133 4.133 22 C -0.142 4.142 23 C -0.217 4.217 24 S 0.089 5.911 25 H 0.101 0.899 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.266 0.734 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.160 0.840 35 H 0.168 0.832 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.557 2.168 -16.047 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.030 4.030 3 H 0.158 0.842 4 C 0.291 3.709 5 O -0.423 6.423 6 O -0.273 6.273 7 C 0.202 3.798 8 H 0.023 0.977 9 C -0.592 4.592 10 H 0.082 0.918 11 C -0.176 4.176 12 N -0.532 5.532 13 Si 0.797 3.203 14 H -0.189 1.189 15 H -0.200 1.200 16 H -0.204 1.204 17 C -0.148 4.148 18 C -0.161 4.161 19 C -0.235 4.235 20 C -0.299 4.299 21 C -0.164 4.164 22 C -0.172 4.172 23 C -0.353 4.353 24 S 0.354 5.646 25 H 0.119 0.881 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.104 0.896 34 H 0.178 0.822 35 H 0.185 0.815 36 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -5.106 0.536 -15.229 16.071 hybrid contribution 1.351 1.111 0.528 1.828 sum -3.755 1.648 -14.701 15.262 Atomic orbital electron populations 1.21807 0.89510 1.03031 1.04895 1.19548 0.99378 1.00004 0.84061 0.84178 1.24193 0.77338 0.83015 0.86396 1.90591 1.36853 1.27204 1.87696 1.86458 1.69279 1.56228 1.15329 1.19822 0.90577 0.89379 0.80005 0.97722 1.21219 1.46502 0.95203 0.96274 0.91752 1.25706 0.94059 0.97084 1.00789 1.70169 1.42485 1.14173 1.26354 0.85282 0.77847 0.78927 0.78211 1.18926 1.19960 1.20393 1.22393 1.00927 0.90695 1.00777 1.22271 0.97702 0.97679 0.98495 1.23254 1.00635 1.05120 0.94518 1.24014 1.07652 0.97592 1.00643 1.20454 0.98733 1.02799 0.94383 1.20411 1.03063 0.92801 1.00917 1.26027 1.05534 1.02429 1.01292 1.84524 1.51644 1.10540 1.17923 0.88053 0.92969 0.90494 0.92447 0.90215 0.91847 0.89342 0.87983 0.89616 0.82241 0.81512 0.79633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.05 71.98 0.65 -2.65 16 2 C -0.01 -0.27 3.20 -12.29 -0.04 -0.31 16 3 H 0.14 3.44 8.09 -2.38 -0.02 3.42 16 4 C 0.45 18.49 6.45 71.23 0.46 18.95 16 5 O -0.53 -24.97 12.28 21.94 0.27 -24.71 16 6 O -0.36 -16.93 9.74 -51.34 -0.50 -17.43 16 7 C 0.26 13.84 2.25 29.85 0.07 13.90 16 8 H 0.01 0.31 6.91 -2.39 -0.02 0.29 16 9 C -0.55 -31.35 8.88 25.60 0.23 -31.13 16 10 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 11 C 0.03 1.40 5.30 84.65 0.45 1.85 16 12 N -0.90 -50.55 11.43 21.44 0.25 -50.31 16 13 Si 0.97 42.88 29.54 68.60 2.03 44.91 16 14 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 15 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 16 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 17 C -0.13 -6.44 4.47 -10.80 -0.05 -6.49 16 18 C -0.12 -5.87 9.04 30.62 0.28 -5.60 16 19 C -0.20 -8.55 9.80 30.62 0.30 -8.25 16 20 C -0.18 -5.09 4.61 24.59 0.11 -4.98 16 21 C -0.13 -3.09 10.01 21.22 0.21 -2.88 16 22 C -0.14 -2.90 10.18 21.22 0.22 -2.69 16 23 C -0.22 -4.73 11.23 66.72 0.75 -3.98 16 24 S 0.09 2.50 22.17 -56.49 -1.25 1.25 16 25 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 1.36 8.01 -2.39 -0.02 1.34 16 27 H 0.08 1.93 8.11 -2.39 -0.02 1.91 16 28 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.08 4.08 8.11 -2.39 -0.02 4.06 16 30 H 0.06 3.30 8.05 -2.39 -0.02 3.28 16 31 H 0.09 3.86 8.14 -2.39 -0.02 3.84 16 32 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 33 H 0.09 3.88 5.37 -2.39 -0.01 3.87 16 34 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 35 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.19 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -66.28 318.33 5.50 -60.78 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 1.07 Total: 19.75 kcal Atomic # 6 Polarization: -37.89 SS G_CDS: 3.63 Total: -34.25 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.25 Total: -50.31 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -0.23 Total: -42.13 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -1.25 Total: 1.25 kcal Total: -66.28 5.50 -60.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346705896.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.140 kcal (2) G-P(sol) polarization free energy of solvation -66.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds