Wall clock time and date at job start Tue Mar 31 2020 01:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47462 * 2 1 4 4 C 1.33862 * 124.51704 * 90.00103 * 3 2 1 5 5 C 1.37405 * 115.11034 * 179.97438 * 4 3 2 6 6 C 1.36755 * 113.29040 * 359.97438 * 5 4 3 7 7 C 1.46386 * 125.46493 * 179.73957 * 6 5 4 8 8 O 1.21631 * 119.99987 * 359.97438 * 7 6 5 9 9 O 1.34903 * 119.99994 * 179.97438 * 7 6 5 10 10 C 1.45202 * 116.99796 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47122 * 30.00451 * 10 9 7 12 12 C 1.50695 * 109.47058 * 150.00242 * 10 9 7 13 13 H 1.08011 * 120.00276 * 0.02562 * 12 10 9 14 14 C 1.37875 * 120.00513 * 179.97438 * 12 10 9 15 15 N 1.31515 * 119.99600 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00385 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47250 * 90.00161 * 16 14 12 18 18 H 1.48504 * 109.47435 * 210.00212 * 16 14 12 19 19 H 1.48504 * 109.47015 * 329.99982 * 16 14 12 20 20 C 1.53004 * 109.47247 * 270.00221 * 10 9 7 21 21 C 1.53001 * 117.49738 * 128.75020 * 20 10 9 22 22 C 1.52996 * 117.49835 * 60.08984 * 20 10 9 23 23 S 1.70614 * 124.51871 * 269.96074 * 3 2 1 24 24 H 1.08998 * 109.47022 * 300.00051 * 1 2 3 25 25 H 1.09004 * 109.47247 * 59.99693 * 1 2 3 26 26 H 1.09001 * 109.47348 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46929 * 240.00325 * 2 1 3 28 28 H 1.09004 * 109.47247 * 120.00307 * 2 1 3 29 29 H 1.08002 * 122.44489 * 359.93956 * 4 3 2 30 30 H 1.07997 * 123.35748 * 180.02562 * 5 4 3 31 31 H 0.97008 * 120.00049 * 180.02562 * 15 14 12 32 32 H 1.08998 * 115.54682 * 274.41676 * 20 10 9 33 33 H 1.08995 * 117.50192 * 359.97438 * 21 20 10 34 34 H 1.09003 * 117.49670 * 145.02079 * 21 20 10 35 35 H 1.09004 * 117.49931 * 214.98288 * 22 20 10 36 36 H 1.08999 * 117.50126 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2853 2.1359 1.1030 5 6 2.7378 3.4138 0.8784 6 6 2.8481 3.7228 -0.4492 7 6 3.2975 5.0077 -0.9877 8 8 3.6099 5.9080 -0.2318 9 8 3.3653 5.1932 -2.3221 10 6 3.8191 6.4926 -2.7848 11 1 4.5094 6.9171 -2.0558 12 6 4.5203 6.3374 -4.1096 13 1 4.6152 5.3599 -4.5592 14 6 5.0400 7.4432 -4.7484 15 7 4.9241 8.6335 -4.2012 16 14 5.9086 7.2508 -6.3908 17 1 4.9215 7.3874 -7.4918 18 1 6.9497 8.3012 -6.5263 19 1 6.5453 5.9110 -6.4601 20 6 2.6162 7.4236 -2.9505 21 6 2.6873 8.7962 -2.2783 22 6 1.7694 7.7114 -1.7092 23 16 2.3557 2.3320 -1.4058 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 2.1435 1.7378 2.0968 30 1 2.9827 4.1049 1.6712 31 1 5.2894 9.4117 -4.6508 32 1 2.0997 7.3583 -3.9081 33 1 3.5908 9.0358 -1.7177 34 1 2.2172 9.6338 -2.7935 35 1 0.6957 7.8358 -1.8501 36 1 2.0689 7.2373 -0.7745 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347937010.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:27 Heat of formation + Delta-G solvation = -55.502496 kcal Electronic energy + Delta-G solvation = -19332.643117 eV Core-core repulsion = 16294.507643 eV Total energy + Delta-G solvation = -3038.135475 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.33883 -39.19302 -38.08850 -36.70353 -34.73509 -34.65773 -30.56428 -29.43421 -26.55208 -25.21343 -23.39429 -23.12718 -22.98737 -21.29592 -20.17822 -19.29330 -18.56999 -17.63983 -17.13488 -16.96463 -16.56198 -15.83128 -15.58067 -15.05119 -14.76795 -14.70143 -14.28903 -13.86129 -13.62490 -13.34857 -13.25518 -12.96891 -12.85206 -12.79631 -12.39738 -12.28960 -12.19204 -12.03358 -11.80629 -11.60473 -11.58945 -11.31672 -10.97997 -10.64108 -10.46315 -9.73363 -9.58145 -8.22929 -6.40413 -0.60931 0.45019 0.97858 1.27869 1.41913 1.43541 1.53960 1.92664 1.98506 2.42253 3.04357 3.20409 3.71470 3.96184 4.07893 4.15542 4.26796 4.31553 4.41246 4.43773 4.47492 4.63784 4.77391 4.82789 4.92428 5.06813 5.08555 5.14445 5.19942 5.21729 5.35968 5.37726 5.43916 5.45358 5.52030 5.79609 6.07457 6.60859 6.89994 7.28872 8.83655 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.023532 B = 0.004638 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.580721 B = 6035.859139 C = 6700.804963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.056 4.056 3 C -0.179 4.179 4 C -0.161 4.161 5 C -0.039 4.039 6 C -0.300 4.300 7 C 0.523 3.477 8 O -0.541 6.541 9 O -0.358 6.358 10 C 0.255 3.745 11 H 0.008 0.992 12 C -0.558 4.558 13 H 0.063 0.937 14 C 0.027 3.973 15 N -0.894 5.894 16 Si 0.976 3.024 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.269 1.269 20 C -0.133 4.133 21 C -0.118 4.118 22 C -0.203 4.203 23 S 0.244 5.756 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.178 0.822 30 H 0.154 0.846 31 H 0.268 0.732 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.582 -16.063 7.957 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.095 4.095 3 C -0.299 4.299 4 C -0.190 4.190 5 C -0.073 4.073 6 C -0.418 4.418 7 C 0.370 3.630 8 O -0.435 6.435 9 O -0.274 6.274 10 C 0.202 3.798 11 H 0.026 0.974 12 C -0.595 4.595 13 H 0.081 0.919 14 C -0.175 4.175 15 N -0.530 5.530 16 Si 0.799 3.201 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.193 1.193 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.240 4.240 23 S 0.514 5.486 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.125 0.875 29 H 0.195 0.805 30 H 0.171 0.829 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.536 -15.865 6.524 19.160 hybrid contribution 0.874 1.139 0.778 1.633 sum -7.663 -14.726 7.302 18.135 Atomic orbital electron populations 1.21820 0.93306 1.03257 1.02265 1.20352 0.96839 0.87174 1.05131 1.24995 1.04240 1.03260 0.97410 1.20104 1.05042 0.92635 1.01232 1.21014 0.95046 0.97549 0.93706 1.23677 1.20847 0.98124 0.99105 1.20266 0.73955 0.87002 0.81781 1.90753 1.48105 1.44558 1.60129 1.86568 1.77541 1.40915 1.22394 1.19915 0.90559 0.75404 0.93873 0.97441 1.21151 1.38483 0.95125 1.04759 0.91877 1.25715 0.95914 0.94270 1.01617 1.70163 1.44256 0.98920 1.39633 0.85296 0.78180 0.78108 0.78476 1.19362 1.20287 1.19308 1.22424 0.98745 0.99239 0.94818 1.22284 0.99289 0.91788 1.02172 1.23269 0.97498 1.05276 0.97929 1.83374 1.57781 1.00403 1.07046 0.92133 0.93299 0.89951 0.89627 0.87476 0.80485 0.82874 0.92291 0.90016 0.91625 0.88978 0.87799 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.89 71.98 0.71 -0.98 16 2 C -0.06 -0.70 6.36 29.85 0.19 -0.51 16 3 C -0.18 -3.60 5.53 24.69 0.14 -3.47 16 4 C -0.16 -3.33 9.99 21.08 0.21 -3.12 16 5 C -0.04 -1.10 10.01 21.73 0.22 -0.89 16 6 C -0.30 -10.68 6.45 24.04 0.16 -10.53 16 7 C 0.52 24.25 7.14 69.94 0.50 24.75 16 8 O -0.54 -27.49 13.94 19.41 0.27 -27.22 16 9 O -0.36 -18.32 9.70 -58.17 -0.56 -18.89 16 10 C 0.26 14.38 2.25 29.85 0.07 14.45 16 11 H 0.01 0.50 6.92 -2.39 -0.02 0.48 16 12 C -0.56 -32.34 8.88 25.60 0.23 -32.11 16 13 H 0.06 3.62 7.81 -2.90 -0.02 3.60 16 14 C 0.03 1.50 5.30 84.65 0.45 1.95 16 15 N -0.89 -50.80 11.43 21.45 0.25 -50.55 16 16 Si 0.98 43.35 29.54 68.60 2.03 45.37 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 C -0.13 -6.86 4.47 -10.79 -0.05 -6.91 16 21 C -0.12 -5.66 9.04 30.62 0.28 -5.38 16 22 C -0.20 -9.08 9.81 30.62 0.30 -8.78 16 23 S 0.24 6.80 22.87 -56.49 -1.29 5.51 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 27 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 30 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 31 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 32 H 0.08 4.28 8.11 -2.39 -0.02 4.26 16 33 H 0.07 3.43 8.05 -2.39 -0.02 3.41 16 34 H 0.09 4.03 8.14 -2.39 -0.02 4.01 16 35 H 0.10 3.96 8.14 -2.38 -0.02 3.94 16 36 H 0.08 3.92 5.37 -2.39 -0.01 3.91 16 Total: -1.00 -67.94 321.61 5.16 -62.79 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 1.08 Total: 14.50 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 3.39 Total: -31.51 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.25 Total: -50.55 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -0.29 Total: -46.11 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 6.80 SS G_CDS: -1.29 Total: 5.51 kcal Total: -67.94 5.16 -62.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347937010.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.286 kcal (2) G-P(sol) polarization free energy of solvation -67.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds