Wall clock time and date at job start Tue Mar 31 2020 01:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32742 * 124.70069 * 2 1 4 4 C 1.44470 * 113.08718 * 180.23289 * 3 2 1 5 5 C 1.47035 * 123.47297 * 179.73169 * 4 3 2 6 6 O 1.21564 * 119.99483 * 180.02562 * 5 4 3 7 7 O 1.34797 * 119.99759 * 0.02562 * 5 4 3 8 8 C 1.45205 * 116.99374 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.47048 * 30.00500 * 8 7 5 10 10 C 1.50704 * 109.46859 * 150.00226 * 8 7 5 11 11 H 1.08003 * 119.99485 * 0.02562 * 10 8 7 12 12 C 1.37878 * 120.00116 * 180.02562 * 10 8 7 13 13 N 1.31518 * 119.99596 * 359.97438 * 12 10 8 14 14 Si 1.86795 * 119.99926 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47354 * 89.99815 * 14 12 10 16 16 H 1.48503 * 109.46818 * 210.00206 * 14 12 10 17 17 H 1.48499 * 109.46978 * 329.99522 * 14 12 10 18 18 C 1.53003 * 109.47347 * 270.00189 * 8 7 5 19 19 C 1.52998 * 117.49738 * 128.75006 * 18 8 7 20 20 C 1.52996 * 117.49607 * 60.09077 * 18 8 7 21 21 C 1.36103 * 113.04888 * 359.50689 * 4 3 2 22 22 C 1.50700 * 124.59968 * 180.20063 * 21 4 3 23 23 S 1.70451 * 110.80622 * 0.47667 * 21 4 3 24 24 H 1.08995 * 109.47447 * 90.00058 * 1 2 3 25 25 H 1.09004 * 109.47320 * 210.00430 * 1 2 3 26 26 H 1.09004 * 109.47128 * 329.99868 * 1 2 3 27 27 H 1.08002 * 123.45319 * 359.96028 * 3 2 1 28 28 H 0.97002 * 119.99726 * 180.02562 * 13 12 10 29 29 H 1.08998 * 115.54841 * 274.41951 * 18 8 7 30 30 H 1.09003 * 117.50108 * 359.97438 * 19 18 8 31 31 H 1.08992 * 117.50034 * 145.02114 * 19 18 8 32 32 H 1.09003 * 117.49934 * 214.97739 * 20 18 8 33 33 H 1.09006 * 117.50102 * 359.97438 * 20 18 8 34 34 H 1.08996 * 109.47345 * 180.29021 * 22 21 4 35 35 H 1.09006 * 109.46726 * 300.29176 * 22 21 4 36 36 H 1.09000 * 109.46999 * 60.28731 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2627 1.0913 0.0000 4 6 3.6778 0.8005 -0.0054 5 6 4.7190 1.8386 -0.0122 6 8 5.8927 1.5221 -0.0170 7 8 4.3720 3.1412 -0.0132 8 6 5.4526 4.1111 -0.0195 9 1 6.3153 3.6905 -0.5362 10 6 5.0015 5.3610 -0.7303 11 1 4.0024 5.4206 -1.1363 12 6 5.8641 6.4285 -0.8623 13 7 7.0805 6.3560 -0.3675 14 14 5.3047 7.9780 -1.7427 15 1 4.6949 8.9118 -0.7622 16 1 6.4728 8.6303 -2.3872 17 1 4.3017 7.6238 -2.7789 18 6 5.8382 4.4544 1.4208 19 6 7.3181 4.3597 1.7976 20 6 6.3282 3.3117 2.3124 21 6 3.9477 -0.5335 0.0014 22 6 5.3332 -1.1263 0.0023 23 16 2.5060 -1.4429 0.0010 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.8608 2.0938 -0.0006 28 1 7.6873 7.1071 -0.4600 29 1 5.2487 5.2419 1.8903 30 1 8.0169 4.0524 1.0196 31 1 7.7021 5.0845 2.5153 32 1 6.0614 3.3476 3.3687 33 1 6.3755 2.3152 1.8731 34 1 5.2630 -2.2140 0.0031 35 1 5.8696 -0.7974 -0.8878 36 1 5.8690 -0.7960 0.8922 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347937434.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:23:04 Heat of formation + Delta-G solvation = -57.905981 kcal Electronic energy + Delta-G solvation = -19725.426143 eV Core-core repulsion = 16687.186445 eV Total energy + Delta-G solvation = -3038.239697 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.092 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.38989 -38.94952 -37.78130 -36.68714 -34.72038 -33.99863 -30.63458 -29.76204 -26.78698 -25.44245 -24.57532 -23.09518 -22.03554 -21.22970 -20.30489 -18.74693 -18.51663 -17.35122 -17.22704 -17.01060 -16.48297 -15.73719 -15.28427 -15.03729 -14.54657 -14.40467 -14.19560 -14.13803 -13.88050 -13.54349 -13.24106 -12.97829 -12.83011 -12.80130 -12.61317 -12.55703 -12.27099 -12.18011 -11.91023 -11.78869 -11.40652 -11.17170 -10.95325 -10.61686 -10.44391 -9.59190 -9.41184 -8.22426 -6.39468 -0.33753 0.44947 0.80909 0.86377 1.41354 1.42784 1.53548 2.12549 2.14470 2.45757 3.04838 3.23335 3.64643 3.84512 4.07483 4.14747 4.20924 4.28678 4.42572 4.51073 4.61162 4.66666 4.70101 4.77880 4.81444 4.94044 5.07677 5.09697 5.13732 5.21584 5.24447 5.36806 5.39607 5.47418 5.55004 5.83550 6.12944 6.63421 7.01997 7.30478 8.84094 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.021535 B = 0.005051 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.927022 B = 5542.422616 C = 6319.100800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.205 4.205 3 C -0.115 4.115 4 C -0.183 4.183 5 C 0.510 3.490 6 O -0.539 6.539 7 O -0.357 6.357 8 C 0.256 3.744 9 H 0.007 0.993 10 C -0.557 4.557 11 H 0.061 0.939 12 C 0.027 3.973 13 N -0.894 5.894 14 Si 0.975 3.025 15 H -0.269 1.269 16 H -0.277 1.277 17 H -0.269 1.269 18 C -0.132 4.132 19 C -0.119 4.119 20 C -0.201 4.201 21 C -0.157 4.157 22 C -0.079 4.079 23 S 0.263 5.737 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.146 0.854 28 H 0.267 0.733 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.035 -15.149 2.381 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.321 4.321 3 C -0.142 4.142 4 C -0.198 4.198 5 C 0.356 3.644 6 O -0.433 6.433 7 O -0.274 6.274 8 C 0.203 3.797 9 H 0.025 0.975 10 C -0.594 4.594 11 H 0.079 0.921 12 C -0.176 4.176 13 N -0.530 5.530 14 Si 0.798 3.202 15 H -0.194 1.194 16 H -0.202 1.202 17 H -0.194 1.194 18 C -0.151 4.151 19 C -0.156 4.156 20 C -0.238 4.238 21 C -0.277 4.277 22 C -0.137 4.137 23 S 0.529 5.471 24 H 0.106 0.894 25 H 0.109 0.891 26 H 0.101 0.899 27 H 0.163 0.837 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.842 -16.624 2.404 19.992 hybrid contribution 0.914 2.900 -0.461 3.076 sum -9.928 -13.724 1.942 17.050 Atomic orbital electron populations 1.20484 0.84766 1.04553 1.04090 1.24722 1.02148 0.95566 1.09707 1.21170 0.90017 1.00660 1.02362 1.19505 0.93255 0.91265 1.15824 1.20995 0.87921 0.83262 0.72220 1.90704 1.21033 1.83386 1.48181 1.86551 1.42566 1.15791 1.82488 1.19848 0.83539 0.84246 0.92080 0.97528 1.21163 1.00730 0.99111 1.38439 0.92055 1.25711 0.94655 1.01427 0.95771 1.70163 1.06323 1.32380 1.44137 0.85311 0.77971 0.78241 0.78628 1.19403 1.20246 1.19388 1.22403 0.98070 0.98989 0.95661 1.22278 0.92031 1.00083 1.01228 1.23256 1.06222 0.94941 0.99364 1.24867 1.04359 0.96305 1.02134 1.20446 0.88896 1.00939 1.03457 1.82422 0.89691 1.06096 1.68849 0.89384 0.89146 0.89865 0.83660 0.92343 0.90303 0.91596 0.89137 0.88035 0.89724 0.88170 0.91131 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.34 71.24 0.74 -0.42 16 2 C -0.20 -4.59 6.44 24.51 0.16 -4.44 16 3 C -0.11 -3.53 9.98 22.68 0.23 -3.30 16 4 C -0.18 -6.66 5.98 -19.88 -0.12 -6.78 16 5 C 0.51 23.59 7.14 70.13 0.50 24.09 16 6 O -0.54 -26.52 11.74 19.63 0.23 -26.29 16 7 O -0.36 -18.48 9.57 -57.09 -0.55 -19.02 16 8 C 0.26 14.45 2.25 29.85 0.07 14.52 16 9 H 0.01 0.44 6.92 -2.39 -0.02 0.42 16 10 C -0.56 -32.50 8.88 25.60 0.23 -32.28 16 11 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 12 C 0.03 1.48 5.30 84.65 0.45 1.93 16 13 N -0.89 -51.04 11.43 21.45 0.25 -50.79 16 14 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 15 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 16 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 C -0.13 -6.84 4.47 -10.79 -0.05 -6.89 16 19 C -0.12 -5.71 9.04 30.62 0.28 -5.43 16 20 C -0.20 -8.98 9.81 30.62 0.30 -8.68 16 21 C -0.16 -4.55 6.35 25.19 0.16 -4.39 16 22 C -0.08 -2.11 8.77 71.24 0.62 -1.49 16 23 S 0.26 5.18 22.93 -56.49 -1.30 3.88 16 24 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 25 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.15 4.62 8.06 -2.91 -0.02 4.59 16 28 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.08 4.17 8.11 -2.39 -0.02 4.15 16 30 H 0.07 3.44 8.05 -2.39 -0.02 3.42 16 31 H 0.09 3.98 8.14 -2.39 -0.02 3.96 16 32 H 0.10 3.89 8.14 -2.39 -0.02 3.87 16 33 H 0.08 3.97 5.37 -2.38 -0.01 3.96 16 34 H 0.10 1.83 8.11 -2.39 -0.02 1.81 16 35 H 0.07 2.13 7.76 -2.38 -0.02 2.11 16 36 H 0.07 2.17 7.80 -2.39 -0.02 2.15 16 Total: -1.00 -68.07 318.30 5.30 -62.76 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 1.08 Total: 17.36 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: 3.56 Total: -33.55 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 0.25 Total: -50.79 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -0.32 Total: -45.32 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 5.18 SS G_CDS: -1.30 Total: 3.88 kcal Total: -68.07 5.30 -62.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347937434.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.857 kcal (2) G-P(sol) polarization free energy of solvation -68.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds