Wall clock time and date at job start Tue Mar 31 2020 01:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47367 * 2 1 4 4 C 1.50703 * 109.47259 * 119.99897 * 2 1 3 5 5 H 1.07999 * 120.00152 * 114.34946 * 4 2 1 6 6 C 1.37879 * 119.99898 * 294.35745 * 4 2 1 7 7 N 1.31507 * 119.99939 * 156.51722 * 6 4 2 8 8 Si 1.86800 * 119.99920 * 336.79832 * 6 4 2 9 9 H 1.48500 * 109.47295 * 179.72490 * 8 6 4 10 10 H 1.48504 * 109.47219 * 299.72276 * 8 6 4 11 11 H 1.48507 * 109.47298 * 59.72421 * 8 6 4 12 12 C 1.50703 * 109.47112 * 239.99736 * 2 1 3 13 13 O 1.20825 * 120.00110 * 240.00356 * 12 2 1 14 14 O 1.34228 * 119.99651 * 60.00053 * 12 2 1 15 15 C 1.45201 * 116.99993 * 179.97438 * 14 12 2 16 16 C 1.50699 * 109.47456 * 179.97438 * 15 14 12 17 17 O 1.21253 * 120.00104 * 0.02562 * 16 15 14 18 18 C 1.47175 * 119.99851 * 179.97438 * 16 15 14 19 19 C 1.39867 * 120.16160 * 359.73172 * 18 16 15 20 20 C 1.37876 * 119.87715 * 179.67206 * 19 18 16 21 21 C 1.38393 * 120.19887 * 0.62026 * 20 19 18 22 22 C 1.38601 * 120.32215 * 359.67591 * 21 20 19 23 23 F 1.35095 * 119.93824 * 180.02562 * 22 21 20 24 24 C 1.38141 * 120.12084 * 359.97438 * 22 21 20 25 25 H 1.09007 * 109.46646 * 53.11482 * 1 2 3 26 26 H 1.08994 * 109.47507 * 173.11288 * 1 2 3 27 27 H 1.08999 * 109.47261 * 293.12213 * 1 2 3 28 28 H 0.96999 * 120.00644 * 355.21451 * 7 6 4 29 29 H 1.08999 * 109.47269 * 300.00664 * 15 14 12 30 30 H 1.09006 * 109.46556 * 59.99928 * 15 14 12 31 31 H 1.08001 * 120.06020 * 359.97438 * 19 18 16 32 32 H 1.07998 * 119.90248 * 180.32037 * 20 19 18 33 33 H 1.07995 * 119.83765 * 179.69222 * 21 20 19 34 34 H 1.07995 * 120.09979 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5760 -1.6386 1.1340 6 6 1.7979 -0.1754 2.4794 7 7 1.8009 -0.9538 3.5393 8 14 1.4681 1.6539 2.6649 9 1 1.2419 1.9734 4.0974 10 1 2.6375 2.4209 2.1655 11 1 0.2627 2.0218 1.8794 12 6 2.0323 -0.7105 -1.2305 13 8 2.7269 -1.6929 -1.1196 14 8 1.7080 -0.2519 -2.4496 15 6 2.2276 -0.9858 -3.5896 16 6 1.7626 -0.3294 -4.8640 17 8 1.0627 0.6596 -4.8161 18 6 2.1588 -0.8881 -6.1666 19 6 2.9715 -2.0249 -6.2257 20 6 3.3337 -2.5475 -7.4491 21 6 2.9060 -1.9430 -8.6184 22 6 2.1055 -0.8126 -8.5695 23 9 1.6921 -0.2292 -9.7156 24 6 1.7288 -0.2821 -7.3509 25 1 -0.3633 0.6169 -0.8220 26 1 -0.3634 -1.0202 -0.1232 27 1 -0.3634 0.4035 0.9451 28 1 1.8988 -1.9133 3.4362 29 1 3.3171 -0.9847 -3.5565 30 1 1.8641 -2.0129 -3.5568 31 1 3.3108 -2.4954 -5.3147 32 1 3.9569 -3.4282 -7.4952 33 1 3.1972 -2.3544 -9.5735 34 1 1.1047 0.5984 -7.3132 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350090336.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:30 Heat of formation + Delta-G solvation = -144.664093 kcal Electronic energy + Delta-G solvation = -20599.959013 eV Core-core repulsion = 16991.744026 eV Total energy + Delta-G solvation = -3608.214988 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.31335 -40.50049 -39.59374 -38.29936 -35.84361 -33.97608 -32.14813 -31.39323 -31.17531 -28.68802 -24.92372 -24.55006 -23.19122 -22.77786 -20.40638 -19.81392 -17.97064 -17.51967 -17.03762 -16.68296 -16.60590 -16.35485 -16.00099 -15.79911 -15.38967 -14.70729 -14.46043 -14.26873 -13.66934 -13.50514 -13.13208 -12.69551 -12.60881 -12.45724 -12.39966 -11.89745 -11.78386 -11.46409 -11.19588 -10.55840 -10.40851 -10.31337 -10.05132 -9.87599 -9.62985 -9.38257 -9.26190 -9.03397 -8.25873 -6.57956 -4.15279 0.09713 0.68020 1.96656 2.81291 3.04025 3.17020 3.36718 3.41513 3.57709 3.70696 3.95781 4.24930 4.39385 4.44731 4.56138 4.72122 4.81320 5.07817 5.11996 5.13376 5.24636 5.49791 5.55433 5.65190 5.74618 5.79451 6.20782 6.29657 6.42949 6.49578 6.79918 6.97577 7.18104 7.19799 7.76973 8.36022 8.60789 8.90180 9.50760 10.82471 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.041377 B = 0.003215 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.538592 B = 8708.274420 C = 9194.067874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.036 3.964 3 H 0.057 0.943 4 C -0.609 4.609 5 H 0.077 0.923 6 C 0.043 3.957 7 N -0.890 5.890 8 Si 1.031 2.969 9 H -0.281 1.281 10 H -0.281 1.281 11 H -0.273 1.273 12 C 0.473 3.527 13 O -0.506 6.506 14 O -0.349 6.349 15 C 0.018 3.982 16 C 0.396 3.604 17 O -0.418 6.418 18 C -0.131 4.131 19 C -0.084 4.084 20 C -0.100 4.100 21 C -0.124 4.124 22 C 0.088 3.912 23 F -0.136 7.136 24 C -0.096 4.096 25 H 0.039 0.961 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.272 0.728 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.602 -1.531 -23.666 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.016 3.984 3 H 0.075 0.925 4 C -0.646 4.646 5 H 0.095 0.905 6 C -0.164 4.164 7 N -0.522 5.522 8 Si 0.858 3.142 9 H -0.207 1.207 10 H -0.207 1.207 11 H -0.199 1.199 12 C 0.317 3.683 13 O -0.392 6.392 14 O -0.267 6.267 15 C -0.057 4.057 16 C 0.270 3.730 17 O -0.290 6.290 18 C -0.132 4.132 19 C -0.103 4.103 20 C -0.118 4.118 21 C -0.143 4.143 22 C 0.069 3.931 23 F -0.114 7.114 24 C -0.115 4.115 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.159 -0.110 -22.520 22.550 hybrid contribution 0.432 -1.406 -1.502 2.103 sum 1.591 -1.516 -24.022 24.122 Atomic orbital electron populations 1.22091 0.95960 1.00768 1.01102 1.19067 0.94475 0.97075 0.87765 0.92542 1.21898 1.41717 1.11666 0.89345 0.90476 1.25696 0.93179 1.05836 0.91724 1.70836 1.42991 1.06627 1.31754 0.84233 0.77516 0.75859 0.76632 1.20692 1.20675 1.19892 1.24973 0.76725 0.83317 0.83333 1.90524 1.35822 1.26331 1.86498 1.86721 1.70167 1.55123 1.14708 1.23051 1.00984 0.97162 0.84549 1.22228 0.78322 0.83801 0.88653 1.90578 1.27530 1.21633 1.89216 1.20182 1.01372 0.97914 0.93765 1.21648 0.95196 0.94140 0.99295 1.21047 0.99533 1.00114 0.91082 1.21456 0.97525 0.94759 1.00583 1.17546 0.99244 0.94501 0.81805 1.91533 1.88702 1.83491 1.47698 1.21385 0.99411 1.00625 0.90071 0.94189 0.93451 0.91648 0.91770 0.87953 0.87995 0.83906 0.83961 0.84117 0.83349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.85 37.16 0.33 -2.75 16 2 C 0.04 0.86 2.34 -92.92 -0.22 0.65 16 3 H 0.06 1.31 6.72 -51.93 -0.35 0.96 16 4 C -0.61 -17.23 8.57 -34.44 -0.30 -17.52 16 5 H 0.08 2.42 7.02 -52.49 -0.37 2.06 16 6 C 0.04 1.20 5.19 -17.82 -0.09 1.11 16 7 N -0.89 -26.82 13.70 55.43 0.76 -26.06 16 8 Si 1.03 24.13 26.45 -169.99 -4.50 19.63 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.27 -5.84 6.15 56.52 0.35 -5.50 16 12 C 0.47 10.64 7.24 36.01 0.26 10.91 16 13 O -0.51 -12.33 15.22 -18.75 -0.29 -12.61 16 14 O -0.35 -6.71 9.68 -45.90 -0.44 -7.16 16 15 C 0.02 0.25 4.56 36.01 0.16 0.41 16 16 C 0.40 5.21 7.20 -30.68 -0.22 4.99 16 17 O -0.42 -6.88 16.49 -14.08 -0.23 -7.11 16 18 C -0.13 -1.34 5.87 -105.07 -0.62 -1.95 16 19 C -0.08 -0.65 9.47 -39.10 -0.37 -1.02 16 20 C -0.10 -0.62 10.03 -39.66 -0.40 -1.01 16 21 C -0.12 -0.85 10.02 -39.39 -0.39 -1.24 16 22 C 0.09 0.79 7.29 -39.48 -0.29 0.51 16 23 F -0.14 -1.33 17.26 2.25 0.04 -1.29 16 24 C -0.10 -0.97 9.58 -39.03 -0.37 -1.34 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 27 H 0.06 1.44 5.48 -51.93 -0.28 1.16 16 28 H 0.27 8.22 8.73 -40.82 -0.36 7.86 16 29 H 0.10 1.27 8.07 -51.93 -0.42 0.85 16 30 H 0.10 1.27 8.09 -51.93 -0.42 0.85 16 31 H 0.14 0.88 7.05 -52.49 -0.37 0.51 16 32 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 33 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.15 1.52 7.65 -52.49 -0.40 1.11 16 LS Contribution 306.56 15.07 4.62 4.62 Total: -1.00 -33.21 306.56 -6.06 -39.27 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -3.51 Total: -1.02 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -2.51 Total: -8.27 kcal Atomic # 7 Polarization: -26.82 SS G_CDS: 0.76 Total: -26.06 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.96 Total: -26.88 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -4.50 Total: 19.63 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.21 -6.06 -39.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350090336.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.395 kcal (2) G-P(sol) polarization free energy of solvation -33.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds