Wall clock time and date at job start Tue Mar 31 2020 02:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35498 * 126.97861 * 2 1 4 4 N 1.30517 * 107.30585 * 180.22882 * 3 2 1 5 5 N 1.28598 * 109.67331 * 359.77392 * 4 3 2 6 6 C 1.30520 * 109.67451 * 0.02562 * 5 4 3 7 7 C 1.50698 * 126.34730 * 179.97438 * 6 5 4 8 8 S 1.81001 * 109.47052 * 90.02228 * 7 6 5 9 9 C 1.76202 * 99.99784 * 179.97438 * 8 7 6 10 10 N 1.32388 * 126.26021 * 359.97438 * 9 8 7 11 11 N 1.28516 * 110.20609 * 180.02562 * 10 9 8 12 12 C 1.33098 * 109.74302 * 0.02562 * 11 10 9 13 13 C 1.39776 * 126.56257 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99778 * 186.09356 * 13 12 11 15 15 C 1.40085 * 120.00068 * 6.08606 * 13 12 11 16 16 N 1.30808 * 119.99942 * 184.12744 * 15 13 12 17 17 Si 1.86799 * 119.99669 * 4.13543 * 15 13 12 18 18 H 1.48509 * 109.46950 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.47355 * 299.99259 * 17 15 13 20 20 H 1.48501 * 109.47215 * 59.99928 * 17 15 13 21 21 N 1.36669 * 126.25987 * 180.30691 * 9 8 7 22 22 C 1.46505 * 127.15024 * 359.97438 * 21 9 8 23 23 H 1.09005 * 109.46761 * 270.14758 * 1 2 3 24 24 H 1.08996 * 109.47373 * 30.14988 * 1 2 3 25 25 H 1.08997 * 109.46734 * 150.15653 * 1 2 3 26 26 H 1.08003 * 126.34588 * 0.02562 * 3 2 1 27 27 H 1.09003 * 109.46642 * 330.02314 * 7 6 5 28 28 H 1.08993 * 109.47041 * 210.02642 * 7 6 5 29 29 H 0.97000 * 120.00392 * 354.84969 * 16 15 13 30 30 H 1.08991 * 109.47295 * 270.14314 * 22 21 9 31 31 H 1.08996 * 109.46934 * 30.14387 * 22 21 9 32 32 H 1.09000 * 109.46691 * 150.13746 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5090 0.6431 -0.0050 5 7 3.5091 -0.6429 -0.0033 6 6 2.2801 -1.0824 0.0023 7 6 1.8477 -2.5260 0.0054 8 16 1.6812 -3.1022 1.7131 9 6 1.1808 -4.7672 1.4268 10 7 1.0042 -5.3397 0.2462 11 7 0.6376 -6.5623 0.3961 12 6 0.5554 -6.8513 1.6928 13 6 0.1882 -8.0792 2.2506 14 1 0.0609 -8.1704 3.3191 15 6 -0.0150 -9.1915 1.4235 16 7 -0.4367 -10.3189 1.9356 17 14 0.3166 -9.0646 -0.4104 18 1 0.0271 -10.3697 -1.0572 19 1 -0.5542 -8.0159 -0.9995 20 1 1.7409 -8.7077 -0.6324 21 7 0.8978 -5.7020 2.3827 22 6 0.9490 -5.5247 3.8361 23 1 -0.3633 0.0026 1.0277 24 1 -0.3634 0.8886 -0.5161 25 1 -0.3633 -0.8914 -0.5114 26 1 1.9701 2.1170 0.0004 27 1 2.5942 -3.1298 -0.5107 28 1 0.8891 -2.6192 -0.5047 29 1 -0.5373 -10.4077 2.8962 30 1 1.9464 -5.7747 4.1977 31 1 0.7220 -4.4879 4.0838 32 1 0.2166 -6.1797 4.3080 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001459065082.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:05 Heat of formation + Delta-G solvation = 140.802625 kcal Electronic energy + Delta-G solvation = -18788.553409 eV Core-core repulsion = 15719.975522 eV Total energy + Delta-G solvation = -3068.577887 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.080 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.28326 -41.02833 -35.31554 -34.02307 -33.68154 -32.53665 -30.12869 -28.24107 -27.61817 -26.79160 -25.36342 -22.55568 -21.63853 -21.19662 -20.20727 -18.28238 -17.48017 -16.89571 -16.53660 -15.51893 -15.36585 -15.11253 -14.54810 -14.18743 -13.77967 -13.63810 -13.37537 -13.21034 -12.98727 -12.72367 -12.64730 -12.03194 -11.66776 -11.24424 -10.95714 -10.69405 -10.53333 -10.40003 -9.98899 -9.66145 -9.47541 -9.30852 -9.20262 -8.77154 -8.47581 -7.49720 -7.24274 -4.92757 1.10194 1.97050 2.26448 2.36646 2.81031 2.86772 3.51710 3.54455 3.79191 3.97611 4.00336 4.07567 4.30500 4.35547 4.36974 4.71254 4.76314 5.03707 5.05204 5.29571 5.30586 5.56625 5.65973 5.66370 5.84632 5.92158 6.26760 6.54874 6.59077 7.02689 7.32615 7.43101 7.97062 8.26358 8.47484 8.55918 9.88731 10.01146 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.034404 B = 0.004233 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.655889 B = 6612.603437 C = 6960.875243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.470 5.470 3 C 0.150 3.850 4 N -0.296 5.296 5 N -0.274 5.274 6 C 0.191 3.809 7 C -0.015 4.015 8 S -0.012 6.012 9 C 0.060 3.940 10 N -0.268 5.268 11 N -0.414 5.414 12 C 0.347 3.653 13 C -0.490 4.490 14 H 0.084 0.916 15 C 0.065 3.935 16 N -0.805 5.805 17 Si 1.112 2.888 18 H -0.310 1.310 19 H -0.260 1.260 20 H -0.279 1.279 21 N -0.511 5.511 22 C 0.101 3.899 23 H 0.088 0.912 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.220 0.780 27 H 0.128 0.872 28 H 0.110 0.890 29 H 0.284 0.716 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.697 17.771 0.482 17.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.161 5.161 3 C -0.138 4.138 4 N -0.136 5.136 5 N -0.116 5.116 6 C -0.077 4.077 7 C -0.166 4.166 8 S 0.213 5.787 9 C -0.314 4.314 10 N -0.112 5.112 11 N -0.264 5.264 12 C 0.104 3.896 13 C -0.531 4.531 14 H 0.102 0.898 15 C -0.158 4.158 16 N -0.429 5.429 17 Si 0.940 3.060 18 H -0.240 1.240 19 H -0.186 1.186 20 H -0.206 1.206 21 N -0.212 5.212 22 C -0.043 4.043 23 H 0.107 0.893 24 H 0.112 0.888 25 H 0.114 0.886 26 H 0.237 0.763 27 H 0.146 0.854 28 H 0.129 0.871 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.222 17.342 -1.346 17.396 hybrid contribution -1.643 0.357 2.201 2.769 sum -1.865 17.699 0.855 17.818 Atomic orbital electron populations 1.22213 0.74897 1.05480 1.04842 1.46175 1.09477 1.06554 1.53910 1.26444 0.87248 0.94851 1.05234 1.74288 1.18097 1.03208 1.18035 1.74342 1.16601 1.03074 1.17605 1.23938 0.87460 0.90873 1.05385 1.21512 1.07193 0.88599 0.99262 1.84843 1.86835 0.99952 1.07065 1.25342 1.19568 0.97199 0.89316 1.74249 1.14594 1.03173 1.19147 1.74008 1.33150 1.06742 1.12519 1.21710 0.93242 0.87270 0.87352 1.19425 1.45232 0.91668 0.96807 0.89812 1.27371 0.88753 0.90238 1.09477 1.70674 1.29314 1.26386 1.16479 0.82714 0.79647 0.73105 0.70541 1.24030 1.18591 1.20576 1.45800 1.59080 1.10333 1.06034 1.21554 1.02572 1.01996 0.78206 0.89333 0.88773 0.88649 0.76343 0.85392 0.87138 0.90477 0.91986 0.91254 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.40 11.04 59.85 0.66 1.06 16 2 N -0.47 -4.76 3.15 -122.69 -0.39 -5.15 16 3 C 0.15 1.50 12.74 -89.94 -1.15 0.35 16 4 N -0.30 -4.33 12.21 29.69 0.36 -3.96 16 5 N -0.27 -4.47 12.21 32.79 0.40 -4.07 16 6 C 0.19 2.63 7.29 -154.99 -1.13 1.50 16 7 C -0.01 -0.22 5.58 36.00 0.20 -0.02 16 8 S -0.01 -0.20 21.77 -107.50 -2.34 -2.54 16 9 C 0.06 1.29 8.09 -87.28 -0.71 0.58 16 10 N -0.27 -6.56 11.62 30.89 0.36 -6.20 16 11 N -0.41 -11.15 7.52 31.26 0.23 -10.92 16 12 C 0.35 9.00 7.27 -154.81 -1.13 7.88 16 13 C -0.49 -12.87 9.50 -38.31 -0.36 -13.23 16 14 H 0.08 2.13 7.46 -52.49 -0.39 1.73 16 15 C 0.06 1.71 5.52 -17.29 -0.10 1.62 16 16 N -0.80 -21.24 13.65 55.56 0.76 -20.48 16 17 Si 1.11 27.48 25.90 -169.99 -4.40 23.08 16 18 H -0.31 -7.38 7.11 56.52 0.40 -6.98 16 19 H -0.26 -6.58 6.76 56.52 0.38 -6.20 16 20 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 21 N -0.51 -11.44 3.26 -123.18 -0.40 -11.84 16 22 C 0.10 1.73 10.89 59.85 0.65 2.38 16 23 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.09 0.58 7.19 -51.93 -0.37 0.20 16 26 H 0.22 1.05 8.06 -52.48 -0.42 0.63 16 27 H 0.13 2.02 8.14 -51.91 -0.42 1.60 16 28 H 0.11 1.47 7.21 -51.92 -0.37 1.09 16 29 H 0.28 7.10 8.72 -40.82 -0.36 6.74 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.01 7.85 -51.93 -0.41 0.60 16 32 H 0.08 1.32 7.48 -51.93 -0.39 0.93 16 LS Contribution 296.71 15.07 4.47 4.47 Total: -1.00 -34.18 296.71 -7.22 -41.39 By element: Atomic # 1 Polarization: -2.68 SS G_CDS: -3.22 Total: -5.90 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -3.05 Total: 2.12 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: 1.33 Total: -62.61 kcal Atomic # 14 Polarization: 27.48 SS G_CDS: -4.40 Total: 23.08 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -2.34 Total: -2.54 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.18 -7.22 -41.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459065082.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.194 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds