Wall clock time and date at job start Tue Mar 31 2020 02:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35498 * 126.97861 * 2 1 4 4 N 1.30517 * 107.30585 * 180.22882 * 3 2 1 5 5 N 1.28598 * 109.67331 * 359.77392 * 4 3 2 6 6 C 1.30520 * 109.67451 * 0.02562 * 5 4 3 7 7 C 1.50698 * 126.34730 * 179.97438 * 6 5 4 8 8 S 1.81001 * 109.47052 * 90.02228 * 7 6 5 9 9 C 1.76202 * 99.99784 * 179.97438 * 8 7 6 10 10 N 1.32388 * 126.26021 * 359.97438 * 9 8 7 11 11 N 1.28516 * 110.20609 * 180.02562 * 10 9 8 12 12 C 1.33098 * 109.74302 * 0.02562 * 11 10 9 13 13 C 1.39776 * 126.56257 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99778 * 186.09356 * 13 12 11 15 15 C 1.40085 * 120.00068 * 6.08606 * 13 12 11 16 16 N 1.30808 * 119.99942 * 184.12744 * 15 13 12 17 17 Si 1.86799 * 119.99669 * 4.13543 * 15 13 12 18 18 H 1.48509 * 109.46950 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.47355 * 299.99259 * 17 15 13 20 20 H 1.48501 * 109.47215 * 59.99928 * 17 15 13 21 21 N 1.36669 * 126.25987 * 180.30691 * 9 8 7 22 22 C 1.46505 * 127.15024 * 359.97438 * 21 9 8 23 23 H 1.09005 * 109.46761 * 270.14758 * 1 2 3 24 24 H 1.08996 * 109.47373 * 30.14988 * 1 2 3 25 25 H 1.08997 * 109.46734 * 150.15653 * 1 2 3 26 26 H 1.08003 * 126.34588 * 0.02562 * 3 2 1 27 27 H 1.09003 * 109.46642 * 330.02314 * 7 6 5 28 28 H 1.08993 * 109.47041 * 210.02642 * 7 6 5 29 29 H 0.97000 * 120.00392 * 354.84969 * 16 15 13 30 30 H 1.08991 * 109.47295 * 270.14314 * 22 21 9 31 31 H 1.08996 * 109.46934 * 30.14387 * 22 21 9 32 32 H 1.09000 * 109.46691 * 150.13746 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5090 0.6431 -0.0050 5 7 3.5091 -0.6429 -0.0033 6 6 2.2801 -1.0824 0.0023 7 6 1.8477 -2.5260 0.0054 8 16 1.6812 -3.1022 1.7131 9 6 1.1808 -4.7672 1.4268 10 7 1.0042 -5.3397 0.2462 11 7 0.6376 -6.5623 0.3961 12 6 0.5554 -6.8513 1.6928 13 6 0.1882 -8.0792 2.2506 14 1 0.0609 -8.1704 3.3191 15 6 -0.0150 -9.1915 1.4235 16 7 -0.4367 -10.3189 1.9356 17 14 0.3166 -9.0646 -0.4104 18 1 0.0271 -10.3697 -1.0572 19 1 -0.5542 -8.0159 -0.9995 20 1 1.7409 -8.7077 -0.6324 21 7 0.8978 -5.7020 2.3827 22 6 0.9490 -5.5247 3.8361 23 1 -0.3633 0.0026 1.0277 24 1 -0.3634 0.8886 -0.5161 25 1 -0.3633 -0.8914 -0.5114 26 1 1.9701 2.1170 0.0004 27 1 2.5942 -3.1298 -0.5107 28 1 0.8891 -2.6192 -0.5047 29 1 -0.5373 -10.4077 2.8962 30 1 1.9464 -5.7747 4.1977 31 1 0.7220 -4.4879 4.0838 32 1 0.2166 -6.1797 4.3080 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459065082.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:04 Heat of formation + Delta-G solvation = 119.984682 kcal Electronic energy + Delta-G solvation = -18789.456142 eV Core-core repulsion = 15719.975522 eV Total energy + Delta-G solvation = -3069.480621 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.080 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.20219 -42.87077 -36.13223 -35.94708 -35.43058 -33.58882 -32.01803 -29.22619 -28.49346 -28.24027 -27.18029 -23.41614 -23.38578 -22.48644 -21.78684 -20.20630 -18.63039 -17.88780 -17.67815 -17.00513 -16.89517 -16.29595 -15.89625 -15.68187 -15.44539 -14.87605 -14.58745 -14.41930 -14.27079 -14.17657 -13.57477 -13.50258 -13.11393 -12.87871 -12.64954 -12.14973 -11.87710 -11.57284 -11.47405 -11.41588 -11.17191 -10.94749 -10.59434 -10.43068 -10.29405 -9.49410 -8.79126 -6.87867 -0.13634 0.74827 0.96418 1.13419 1.50744 1.55140 1.59534 1.85598 1.94593 2.11575 2.19833 2.41193 2.97157 3.03963 3.55524 3.83138 3.87371 3.92117 4.27601 4.32541 4.42918 4.44830 4.46262 4.54933 4.67027 4.70808 4.84079 5.02381 5.20993 5.36707 5.66226 5.85092 5.99711 6.37953 6.55218 7.61259 7.92074 8.12477 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.034404 B = 0.004233 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.655889 B = 6612.603437 C = 6960.875243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.463 5.463 3 C 0.178 3.822 4 N -0.345 5.345 5 N -0.316 5.316 6 C 0.179 3.821 7 C -0.010 4.010 8 S 0.035 5.965 9 C 0.078 3.922 10 N -0.305 5.305 11 N -0.445 5.445 12 C 0.328 3.672 13 C -0.508 4.508 14 H 0.085 0.915 15 C 0.043 3.957 16 N -0.822 5.822 17 Si 1.143 2.857 18 H -0.298 1.298 19 H -0.273 1.273 20 H -0.296 1.296 21 N -0.513 5.513 22 C 0.092 3.908 23 H 0.100 0.900 24 H 0.132 0.868 25 H 0.092 0.908 26 H 0.272 0.728 27 H 0.111 0.889 28 H 0.123 0.877 29 H 0.287 0.713 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.383 20.741 1.065 20.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.153 5.153 3 C -0.110 4.110 4 N -0.184 5.184 5 N -0.158 5.158 6 C -0.091 4.091 7 C -0.161 4.161 8 S 0.260 5.740 9 C -0.297 4.297 10 N -0.147 5.147 11 N -0.294 5.294 12 C 0.081 3.919 13 C -0.549 4.549 14 H 0.103 0.897 15 C -0.177 4.177 16 N -0.448 5.448 17 Si 0.972 3.028 18 H -0.227 1.227 19 H -0.200 1.200 20 H -0.223 1.223 21 N -0.213 5.213 22 C -0.050 4.050 23 H 0.118 0.882 24 H 0.150 0.850 25 H 0.110 0.890 26 H 0.288 0.712 27 H 0.129 0.871 28 H 0.142 0.858 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.931 20.307 -0.749 20.342 hybrid contribution -1.387 -0.203 2.057 2.489 sum -2.317 20.104 1.308 20.279 Atomic orbital electron populations 1.22614 0.72157 1.07286 1.06174 1.46406 1.10959 1.05406 1.52560 1.27409 0.85877 0.96518 1.01234 1.74199 1.20868 1.02653 1.20690 1.74240 1.18352 1.04360 1.18887 1.23594 0.87726 0.91055 1.06721 1.21454 1.07418 0.89266 0.97974 1.84742 1.85610 0.95311 1.08355 1.26376 1.15503 0.99305 0.88564 1.74187 1.17167 1.02775 1.20586 1.73884 1.33888 1.08151 1.13498 1.21772 0.94078 0.88322 0.87706 1.19424 1.46612 0.92054 0.96842 0.89741 1.27752 0.88847 0.90475 1.10636 1.70666 1.30743 1.26569 1.16778 0.82237 0.78129 0.72919 0.69491 1.22735 1.19959 1.22316 1.46161 1.57636 1.09422 1.08095 1.21921 1.03776 1.04136 0.75216 0.88177 0.85003 0.88975 0.71211 0.87091 0.85844 0.90203 0.90503 0.88224 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 11.04 127.77 1.41 1.85 16 2 N -0.46 -7.84 3.15 -542.07 -1.71 -9.55 16 3 C 0.18 2.90 12.74 180.11 2.30 5.20 16 4 N -0.34 -9.46 12.21 -59.99 -0.73 -10.19 16 5 N -0.32 -10.01 12.21 -50.16 -0.61 -10.62 16 6 C 0.18 4.59 7.29 137.98 1.01 5.59 16 7 C -0.01 -0.28 5.58 71.24 0.40 0.11 16 8 S 0.03 1.06 21.77 -56.49 -1.23 -0.17 16 9 C 0.08 3.26 8.09 179.18 1.45 4.71 16 10 N -0.30 -14.88 11.62 -56.17 -0.65 -15.54 16 11 N -0.45 -24.23 7.52 -55.02 -0.41 -24.64 16 12 C 0.33 17.06 7.27 133.23 0.97 18.03 16 13 C -0.51 -26.93 9.50 23.09 0.22 -26.71 16 14 H 0.08 4.32 7.46 -2.91 -0.02 4.30 16 15 C 0.04 2.32 5.52 85.29 0.47 2.79 16 16 N -0.82 -43.74 13.65 21.86 0.30 -43.45 16 17 Si 1.14 57.12 25.90 68.60 1.78 58.90 16 18 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 19 H -0.27 -14.06 6.76 99.48 0.67 -13.39 16 20 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 21 N -0.51 -22.36 3.26 -543.63 -1.77 -24.13 16 22 C 0.09 2.93 10.89 127.77 1.39 4.32 16 23 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 24 H 0.13 0.04 8.14 -2.39 -0.02 0.02 16 25 H 0.09 0.81 7.19 -2.39 -0.02 0.80 16 26 H 0.27 1.08 8.06 -2.91 -0.02 1.05 16 27 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 28 H 0.12 3.08 7.21 -2.40 -0.02 3.06 16 29 H 0.29 14.49 8.72 -92.71 -0.81 13.68 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.10 2.56 7.85 -2.39 -0.02 2.54 16 32 H 0.08 2.66 7.48 -2.39 -0.02 2.64 16 Total: -1.00 -76.12 296.71 5.65 -70.48 By element: Atomic # 1 Polarization: -8.06 SS G_CDS: 1.08 Total: -6.98 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 9.61 Total: 15.89 kcal Atomic # 7 Polarization: -132.52 SS G_CDS: -5.59 Total: -138.11 kcal Atomic # 14 Polarization: 57.12 SS G_CDS: 1.78 Total: 58.90 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -1.23 Total: -0.17 kcal Total: -76.12 5.65 -70.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459065082.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.461 kcal (2) G-P(sol) polarization free energy of solvation -76.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds