Wall clock time and date at job start Tue Mar 31 2020 01:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21251 * 119.99994 * 2 1 4 4 C 1.47185 * 120.00282 * 180.02562 * 2 1 3 5 5 C 1.39858 * 120.13043 * 359.97438 * 4 2 1 6 6 C 1.38131 * 119.90805 * 179.97438 * 5 4 2 7 7 F 1.35101 * 119.90889 * 180.02562 * 6 5 4 8 8 C 1.38541 * 120.18507 * 0.02562 * 6 5 4 9 9 C 1.38817 * 120.26715 * 359.97438 * 8 6 5 10 10 O 1.35932 * 119.95435 * 180.02562 * 9 8 6 11 11 C 1.34264 * 117.00065 * 248.97984 * 10 9 8 12 12 O 1.20835 * 119.99880 * 5.77124 * 11 10 9 13 13 C 1.50698 * 120.00381 * 185.77516 * 11 10 9 14 14 H 1.09007 * 109.46643 * 59.99841 * 13 11 10 15 15 C 1.53003 * 109.47176 * 300.00092 * 13 11 10 16 16 C 1.50690 * 109.47199 * 179.97438 * 13 11 10 17 17 H 1.08007 * 120.00262 * 0.02562 * 16 13 11 18 18 C 1.37883 * 120.00051 * 180.02562 * 16 13 11 19 19 N 1.31510 * 119.99829 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 119.99924 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.47229 * 90.00029 * 20 18 16 22 22 H 1.48505 * 109.46761 * 210.00013 * 20 18 16 23 23 H 1.48495 * 109.47067 * 329.99582 * 20 18 16 24 24 C 1.38429 * 120.08703 * 359.97438 * 9 8 6 25 25 H 1.08997 * 109.46864 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46818 * 299.99280 * 1 2 3 27 27 H 1.09000 * 109.47452 * 59.99347 * 1 2 3 28 28 H 1.07996 * 120.04657 * 359.70932 * 5 4 2 29 29 H 1.08003 * 119.86784 * 180.02562 * 8 6 5 30 30 H 1.09000 * 109.46651 * 59.99325 * 15 13 11 31 31 H 1.08994 * 109.47250 * 179.97438 * 15 13 11 32 32 H 1.08999 * 109.46736 * 299.99944 * 15 13 11 33 33 H 0.97006 * 120.00312 * 180.02562 * 19 18 16 34 34 H 1.08004 * 120.09083 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2746 -0.0006 5 6 1.5465 -2.4875 -0.0006 6 6 2.2419 -3.6810 -0.0016 7 9 1.5691 -4.8526 -0.0022 8 6 3.6273 -3.6800 -0.0022 9 6 4.3261 -2.4806 -0.0022 10 8 5.6854 -2.4870 -0.0032 11 6 6.2979 -2.0613 1.1132 12 8 5.6465 -1.7943 2.0953 13 6 7.7976 -1.9165 1.1415 14 1 8.1077 -1.1995 0.3812 15 6 8.4464 -3.2729 0.8583 16 6 8.2294 -1.4263 2.4994 17 1 7.4916 -1.2388 3.2656 18 6 9.5664 -1.2172 2.7639 19 7 10.4647 -1.4460 1.8311 20 14 10.1016 -0.6102 4.4475 21 1 10.3638 -1.7733 5.3327 22 1 11.3403 0.1976 4.3116 23 1 9.0264 0.2278 5.0364 24 6 3.6405 -1.2780 -0.0022 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 0.4666 -2.4908 0.0046 29 1 4.1658 -4.6162 -0.0034 30 1 8.1339 -3.6270 -0.1241 31 1 9.5311 -3.1681 0.8783 32 1 8.1362 -3.9898 1.6185 33 1 11.4054 -1.2992 2.0172 34 1 4.1842 -0.3447 -0.0026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520068751.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:08 Heat of formation + Delta-G solvation = -136.247920 kcal Electronic energy + Delta-G solvation = -21139.343266 eV Core-core repulsion = 17531.493231 eV Total energy + Delta-G solvation = -3607.850035 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.11328 -40.98027 -39.75872 -37.93995 -36.20926 -34.02551 -32.08657 -30.85672 -30.39128 -29.29528 -25.31436 -24.57786 -24.08069 -22.32588 -20.76279 -19.62821 -17.97586 -17.19617 -16.84339 -16.36805 -16.25888 -15.92520 -15.75955 -15.57347 -15.13214 -14.82231 -14.78201 -14.48412 -13.48195 -13.20577 -12.75961 -12.70226 -12.54819 -12.26770 -12.04020 -11.93626 -11.69198 -11.15623 -10.99589 -10.81381 -10.74180 -10.45804 -10.14329 -10.01679 -9.53771 -9.17156 -9.11553 -8.81252 -8.53131 -6.18874 -4.25384 0.29845 0.86711 2.06288 2.95698 3.04761 3.26547 3.32631 3.39447 3.53224 3.76535 4.06943 4.34716 4.50019 4.67698 4.83137 4.86609 4.98094 5.12741 5.14890 5.24895 5.45348 5.60204 5.73640 5.92914 5.99748 6.10228 6.49029 6.55771 6.72411 6.77872 7.03379 7.26742 7.30118 7.63937 7.84228 8.01830 8.60765 8.82763 9.40969 10.88379 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.004375 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.658104 B = 6398.218955 C = 7184.132830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.397 3.603 3 O -0.447 6.447 4 C -0.130 4.130 5 C -0.121 4.121 6 C 0.103 3.897 7 F -0.133 7.133 8 C -0.131 4.131 9 C 0.123 3.877 10 O -0.302 6.302 11 C 0.465 3.535 12 O -0.492 6.492 13 C 0.062 3.938 14 H 0.070 0.930 15 C -0.136 4.136 16 C -0.517 4.517 17 H 0.076 0.924 18 C 0.064 3.936 19 N -0.890 5.890 20 Si 0.906 3.094 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.271 1.271 24 C -0.080 4.080 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.150 0.850 29 H 0.150 0.850 30 H 0.025 0.975 31 H 0.099 0.901 32 H 0.033 0.967 33 H 0.265 0.735 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.125 -3.081 -6.276 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.274 3.726 3 O -0.321 6.321 4 C -0.131 4.131 5 C -0.140 4.140 6 C 0.084 3.916 7 F -0.111 7.111 8 C -0.150 4.150 9 C 0.081 3.919 10 O -0.220 6.220 11 C 0.310 3.690 12 O -0.375 6.375 13 C 0.044 3.956 14 H 0.088 0.912 15 C -0.194 4.194 16 C -0.555 4.555 17 H 0.095 0.905 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.734 3.266 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.196 1.196 24 C -0.099 4.099 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.167 0.833 29 H 0.168 0.832 30 H 0.044 0.956 31 H 0.117 0.883 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.839 -2.480 -5.965 18.036 hybrid contribution 0.147 -0.102 0.870 0.889 sum -16.692 -2.582 -5.095 17.642 Atomic orbital electron populations 1.22233 0.93236 1.04928 1.05232 1.22407 0.91740 0.87162 0.71248 1.90586 1.72036 1.33970 1.35512 1.20141 0.93508 0.94642 1.04852 1.21400 1.01005 0.90186 1.01403 1.17127 0.89303 0.81386 1.03777 1.91530 1.80003 1.45573 1.94028 1.21328 0.92630 0.99566 1.01487 1.18229 0.83495 0.91958 0.98229 1.84868 1.15608 1.78888 1.42590 1.26064 0.93507 0.70927 0.78519 1.90563 1.67116 1.45193 1.34654 1.18872 0.78396 0.97508 1.00863 0.91243 1.21774 1.05240 0.95157 0.97219 1.21104 0.92929 1.45056 0.96406 0.90540 1.24926 0.96188 0.94971 0.97715 1.69867 1.01627 1.48278 1.33051 0.86344 0.78063 0.78908 0.83324 1.20433 1.21019 1.19608 1.21733 0.93651 0.98785 0.95724 0.89724 0.88453 0.88487 0.83260 0.83239 0.95584 0.88258 0.94758 0.92519 0.83621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.40 10.19 36.00 0.37 -1.03 16 2 C 0.40 4.78 7.23 -30.68 -0.22 4.55 16 3 O -0.45 -7.10 17.09 5.58 0.10 -7.00 16 4 C -0.13 -1.70 5.87 -105.09 -0.62 -2.31 16 5 C -0.12 -1.30 9.42 -39.02 -0.37 -1.67 16 6 C 0.10 1.28 7.29 -39.51 -0.29 0.99 16 7 F -0.13 -1.57 17.26 2.25 0.04 -1.53 16 8 C -0.13 -1.87 9.96 -39.26 -0.39 -2.26 16 9 C 0.12 2.10 5.26 -39.30 -0.21 1.89 16 10 O -0.30 -5.92 9.94 -23.64 -0.23 -6.16 16 11 C 0.46 10.63 7.02 36.00 0.25 10.88 16 12 O -0.49 -12.29 14.87 -18.76 -0.28 -12.56 16 13 C 0.06 1.54 2.74 -92.93 -0.25 1.28 16 14 H 0.07 1.75 8.14 -51.92 -0.42 1.33 16 15 C -0.14 -3.10 8.90 37.16 0.33 -2.77 16 16 C -0.52 -14.17 8.37 -34.44 -0.29 -14.46 16 17 H 0.08 2.19 6.76 -52.48 -0.35 1.84 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -24.20 11.32 55.43 0.63 -23.57 16 20 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 C -0.08 -1.30 8.87 -38.94 -0.35 -1.65 16 25 H 0.08 0.41 5.60 -51.93 -0.29 0.12 16 26 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.15 1.04 5.92 -52.49 -0.31 0.73 16 29 H 0.15 1.93 8.06 -52.48 -0.42 1.51 16 30 H 0.03 0.51 8.11 -51.93 -0.42 0.09 16 31 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.15 2.55 7.65 -52.48 -0.40 2.14 16 LS Contribution 306.80 15.07 4.62 4.62 Total: -1.00 -30.45 306.80 -5.62 -36.06 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -3.34 Total: -1.07 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -2.12 Total: -4.92 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.63 Total: -23.57 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.42 Total: -25.73 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.45 -5.62 -36.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520068751.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.187 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds