Wall clock time and date at job start Tue Mar 31 2020 01:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86799 * 120.00255 * 2 1 4 4 H 1.48501 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47034 * 299.99630 * 3 2 1 6 6 H 1.48496 * 109.47301 * 59.99594 * 3 2 1 7 7 C 1.40028 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99951 * 180.02562 * 7 2 1 9 9 C 1.41340 * 120.00097 * 0.02562 * 7 2 1 10 10 C 1.40610 * 119.79111 * 180.02562 * 9 7 2 11 11 C 1.38299 * 119.13159 * 179.97438 * 10 9 7 12 12 C 1.38696 * 118.66928 * 359.97438 * 11 10 9 13 13 C 1.39636 * 119.49556 * 0.02562 * 12 11 10 14 14 N 1.39272 * 119.57611 * 179.97438 * 13 12 11 15 15 C 1.34769 * 120.00436 * 185.29945 * 14 13 12 16 16 O 1.21279 * 119.99919 * 354.84876 * 15 14 13 17 17 C 1.50699 * 120.00314 * 174.84573 * 15 14 13 18 18 H 1.08996 * 109.46916 * 55.00067 * 17 15 14 19 19 O 1.42907 * 109.46924 * 175.00023 * 17 15 14 20 20 C 1.52999 * 109.47107 * 295.00001 * 17 15 14 21 21 C 1.50700 * 109.46962 * 174.99935 * 20 17 15 22 22 O 1.20830 * 120.00022 * 0.02562 * 21 20 17 23 23 O 1.34225 * 119.99635 * 179.72383 * 21 20 17 24 24 N 1.31926 * 120.84907 * 0.27556 * 13 12 11 25 25 H 0.96997 * 119.99766 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.43501 * 359.97438 * 10 9 7 27 27 H 1.08005 * 120.66917 * 179.97438 * 11 10 9 28 28 H 1.07994 * 120.25485 * 180.02562 * 12 11 10 29 29 H 0.97006 * 119.99810 * 5.29870 * 14 13 12 30 30 H 0.96695 * 113.99909 * 59.99893 * 19 17 15 31 31 H 1.09003 * 109.47293 * 54.99910 * 20 17 15 32 32 H 1.09005 * 109.47073 * 294.99888 * 20 17 15 33 33 H 0.96702 * 116.99968 * 180.27889 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3463 -0.0006 5 1 1.8828 2.3964 -1.2126 6 1 1.8827 2.3965 1.2124 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0010 9 6 1.3008 -2.4367 0.0005 10 6 2.0083 -3.6519 0.0016 11 6 1.3031 -4.8416 0.0022 12 6 -0.0831 -4.7934 0.0021 13 6 -0.7279 -3.5548 0.0010 14 7 -2.1197 -3.5045 0.0005 15 6 -2.7512 -2.3189 -0.1084 16 8 -2.1109 -1.2889 -0.1118 17 6 -4.2529 -2.2729 -0.2260 18 1 -4.6995 -2.8075 0.6123 19 8 -4.6904 -0.9126 -0.2109 20 6 -4.6821 -2.9322 -1.5382 21 6 -6.1865 -2.9966 -1.5994 22 8 -6.8475 -2.5595 -0.6873 23 8 -6.7922 -3.5340 -2.6699 24 7 -0.0358 -2.4318 -0.0054 25 1 -0.4850 0.8400 -0.0004 26 1 3.0883 -3.6562 0.0021 27 1 1.8213 -5.7892 0.0026 28 1 -0.6593 -5.7068 0.0030 29 1 -2.6347 -4.3229 0.0784 30 1 -4.3313 -0.3759 -0.9307 31 1 -4.2729 -3.9412 -1.5888 32 1 -4.3090 -2.3463 -2.3783 33 1 -7.7590 -3.5494 -2.6657 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574240834.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:20 Heat of formation + Delta-G solvation = -144.861497 kcal Electronic energy + Delta-G solvation = -21722.536406 eV Core-core repulsion = 18134.232819 eV Total energy + Delta-G solvation = -3588.303586 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.58286 -40.86157 -39.53573 -37.56496 -36.86584 -35.91991 -34.90776 -32.71599 -32.18501 -30.79946 -27.68863 -26.76023 -23.80815 -23.07946 -22.31219 -21.13993 -19.82085 -19.06211 -18.57538 -18.11635 -17.30498 -17.12160 -16.69782 -16.47207 -16.25351 -15.99222 -15.60624 -15.22893 -14.77372 -14.62591 -14.11744 -13.82774 -13.75080 -13.19147 -12.92536 -12.74736 -12.68354 -12.53768 -12.47221 -12.31132 -11.81998 -11.73028 -11.62498 -11.51591 -10.87360 -10.53602 -9.88629 -9.08790 -8.82885 -8.05625 -6.40876 0.89991 1.24051 1.24951 1.41102 1.51414 1.54940 1.80314 2.12125 2.26926 2.39029 2.99306 3.33957 3.49790 3.77619 3.96556 4.07143 4.39195 4.46047 4.52755 4.67324 4.77474 4.89794 4.97810 5.07424 5.29074 5.65597 5.69404 5.84208 5.94778 6.15092 6.37289 6.53833 6.74129 6.83707 7.03744 7.08814 7.59531 8.34532 8.56625 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.018894 B = 0.005388 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.568754 B = 5195.066793 C = 6418.521700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.691 5.691 2 C 0.014 3.986 3 Si 0.973 3.027 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.467 4.467 8 H 0.084 0.916 9 C 0.237 3.763 10 C -0.329 4.329 11 C -0.035 4.035 12 C -0.342 4.342 13 C 0.347 3.653 14 N -0.648 5.648 15 C 0.441 3.559 16 O -0.448 6.448 17 C 0.122 3.878 18 H 0.134 0.866 19 O -0.545 6.545 20 C -0.137 4.137 21 C 0.492 3.508 22 O -0.538 6.538 23 O -0.512 6.512 24 N -0.508 5.508 25 H 0.271 0.729 26 H 0.102 0.898 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.423 0.577 30 H 0.387 0.613 31 H 0.146 0.854 32 H 0.123 0.877 33 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.948 -7.190 -5.043 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.310 5.310 2 C -0.212 4.212 3 Si 0.794 3.206 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.498 4.498 8 H 0.102 0.898 9 C 0.112 3.888 10 C -0.352 4.352 11 C -0.059 4.059 12 C -0.367 4.367 13 C 0.109 3.891 14 N -0.300 5.300 15 C 0.223 3.777 16 O -0.313 6.313 17 C 0.059 3.941 18 H 0.152 0.848 19 O -0.350 6.350 20 C -0.175 4.175 21 C 0.335 3.665 22 O -0.427 6.427 23 O -0.326 6.326 24 N -0.228 5.228 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.154 0.846 28 H 0.154 0.846 29 H 0.261 0.739 30 H 0.236 0.764 31 H 0.164 0.836 32 H 0.141 0.859 33 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -11.269 -5.487 -4.314 13.255 hybrid contribution 0.387 -0.297 -0.289 0.567 sum -10.881 -5.784 -4.604 13.155 Atomic orbital electron populations 1.70485 1.07183 1.27963 1.25412 1.26973 0.96015 1.03824 0.94361 0.85302 0.79595 0.77323 0.78374 1.17895 1.19446 1.19817 1.19923 0.94419 0.90536 1.44882 0.89812 1.18848 0.88009 0.93312 0.88664 1.21806 0.99178 0.93925 1.20286 1.21048 0.93736 0.97240 0.93914 1.21001 0.95093 0.95861 1.24739 1.19139 0.85195 0.91047 0.93754 1.43386 1.03596 1.10384 1.72594 1.22258 0.91414 0.84767 0.79210 1.91194 1.66085 1.32577 1.41461 1.21566 0.88261 0.85025 0.99285 0.84822 1.86638 1.71473 1.20512 1.56422 1.22006 0.88772 1.07035 0.99649 1.23115 0.91749 0.72774 0.78849 1.90784 1.67508 1.44954 1.39469 1.84489 1.30075 1.74711 1.43316 1.68638 1.07315 1.25540 1.21286 0.91854 0.87980 0.84597 0.84644 0.73898 0.76356 0.83581 0.85860 0.70926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -39.02 8.99 21.84 0.20 -38.82 16 2 C 0.01 0.73 5.50 85.29 0.47 1.20 16 3 Si 0.97 40.42 29.56 68.60 2.03 42.45 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 7 C -0.47 -26.30 9.14 23.47 0.21 -26.08 16 8 H 0.08 4.46 7.85 -2.91 -0.02 4.43 16 9 C 0.24 13.44 6.55 40.21 0.26 13.70 16 10 C -0.33 -16.26 9.83 22.86 0.22 -16.04 16 11 C -0.04 -1.47 10.15 22.39 0.23 -1.24 16 12 C -0.34 -13.69 9.95 22.72 0.23 -13.46 16 13 C 0.35 15.84 7.43 133.23 0.99 16.83 16 14 N -0.65 -22.33 5.27 -308.38 -1.62 -23.96 16 15 C 0.44 16.17 7.12 87.66 0.62 16.79 16 16 O -0.45 -21.84 12.10 15.97 0.19 -21.64 16 17 C 0.12 3.25 2.93 29.85 0.09 3.33 16 18 H 0.13 3.28 7.96 -2.39 -0.02 3.26 16 19 O -0.55 -17.05 12.23 -122.60 -1.50 -18.55 16 20 C -0.14 -2.53 5.47 29.85 0.16 -2.36 16 21 C 0.49 9.62 8.21 71.24 0.58 10.20 16 22 O -0.54 -14.67 16.18 27.02 0.44 -14.23 16 23 O -0.51 -6.99 13.42 -51.36 -0.69 -7.68 16 24 N -0.51 -28.22 5.74 -186.36 -1.07 -29.29 16 25 H 0.27 14.38 8.29 -92.71 -0.77 13.61 16 26 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 27 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 28 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 29 H 0.42 9.89 8.58 -92.70 -0.80 9.09 16 30 H 0.39 10.63 8.79 -74.06 -0.65 9.98 16 31 H 0.15 1.89 7.93 -2.39 -0.02 1.87 16 32 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 33 H 0.43 2.35 9.10 -74.06 -0.67 1.67 16 Total: -1.00 -80.50 297.89 1.13 -79.37 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: -0.92 Total: 29.48 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 4.07 Total: 2.87 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -2.50 Total: -92.07 kcal Atomic # 8 Polarization: -60.54 SS G_CDS: -1.56 Total: -62.10 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -80.50 1.13 -79.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574240834.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.488 kcal (2) G-P(sol) polarization free energy of solvation -80.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds