Wall clock time and date at job start Tue Mar 31 2020 01:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86799 * 119.99945 * 2 1 4 4 H 1.48497 * 109.47212 * 269.99245 * 3 2 1 5 5 H 1.48499 * 109.47174 * 29.99822 * 3 2 1 6 6 H 1.48511 * 109.47149 * 149.99655 * 3 2 1 7 7 C 1.40047 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00224 * 180.02562 * 7 2 1 9 9 C 1.46375 * 120.00517 * 0.02562 * 7 2 1 10 10 O 1.21692 * 119.99339 * 0.02562 * 9 7 2 11 11 N 1.34775 * 120.00446 * 180.02562 * 9 7 2 12 12 C 1.46497 * 119.99721 * 180.02562 * 11 9 7 13 13 H 1.08997 * 109.47720 * 324.99525 * 12 11 9 14 14 C 1.50698 * 109.47481 * 85.00048 * 12 11 9 15 15 O 1.20828 * 119.99703 * 359.97438 * 14 12 11 16 16 O 1.34228 * 120.00535 * 179.97438 * 14 12 11 17 17 C 1.53001 * 109.46835 * 204.99869 * 12 11 9 18 18 H 1.08999 * 109.47164 * 54.99914 * 17 12 11 19 19 O 1.42903 * 109.47171 * 294.99648 * 17 12 11 20 20 C 1.50707 * 109.47316 * 175.00332 * 17 12 11 21 21 C 1.38650 * 120.79272 * 84.71505 * 20 17 12 22 22 C 1.38198 * 119.16162 * 179.75451 * 21 20 17 23 23 N 1.31869 * 120.76223 * 0.53955 * 22 21 20 24 24 C 1.31870 * 121.73197 * 359.73372 * 23 22 21 25 25 C 1.38209 * 120.75841 * 359.97438 * 24 23 22 26 26 H 0.96995 * 119.99744 * 0.02562 * 1 2 3 27 27 H 0.96996 * 120.00092 * 359.97438 * 11 9 7 28 28 H 0.96702 * 117.00178 * 180.02562 * 16 14 12 29 29 H 0.96700 * 114.00311 * 300.00378 * 19 17 12 30 30 H 1.08000 * 120.41463 * 0.02562 * 21 20 17 31 31 H 1.08000 * 119.61623 * 180.24810 * 22 21 20 32 32 H 1.07987 * 119.62261 * 180.02562 * 24 23 22 33 33 H 1.07995 * 120.41687 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4884 2.0463 -1.4000 5 1 1.4381 2.6527 0.7000 6 1 3.5383 1.4402 0.7002 7 6 2.0069 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0582 -2.4805 -0.0004 11 7 1.9490 -3.6477 0.0016 12 6 1.2164 -4.9164 0.0010 13 1 0.3051 -4.8101 0.5894 14 6 0.8596 -5.2899 -1.4147 15 8 1.1836 -4.5699 -2.3293 16 8 0.1819 -6.4223 -1.6596 17 6 2.0929 -6.0116 0.6119 18 1 2.4241 -5.7014 1.6029 19 8 3.2312 -6.2320 -0.2235 20 6 1.2980 -7.2870 0.7242 21 6 1.1943 -8.1559 -0.3513 22 6 0.4609 -9.3186 -0.2094 23 7 -0.1443 -9.5997 0.9279 24 6 -0.0721 -8.7943 1.9696 25 6 0.6481 -7.6166 1.9038 26 1 -0.4849 0.8400 -0.0004 27 1 2.9190 -3.6478 0.0020 28 1 -0.0238 -6.6198 -2.5837 29 1 3.0111 -6.5112 -1.1227 30 1 1.6843 -7.9290 -1.2866 31 1 0.3787 -10.0026 -1.0412 32 1 -0.5810 -9.0584 2.8847 33 1 0.7039 -6.9612 2.7604 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574242674.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:41 Heat of formation + Delta-G solvation = -132.569700 kcal Electronic energy + Delta-G solvation = -22093.697659 eV Core-core repulsion = 18505.927086 eV Total energy + Delta-G solvation = -3587.770574 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.87815 -39.68324 -37.78467 -36.90451 -35.74357 -33.46280 -32.70520 -32.25749 -31.21323 -28.98267 -26.24429 -25.00321 -23.50892 -22.53800 -20.97185 -19.68961 -18.05741 -17.72228 -17.60082 -16.92409 -16.22862 -15.95654 -15.67136 -15.30838 -14.90441 -14.35277 -14.26217 -14.10520 -13.80925 -13.66430 -13.30698 -12.80510 -12.44128 -12.04000 -11.77925 -11.53291 -11.26256 -11.17073 -11.03748 -10.62607 -10.52690 -10.28453 -10.20681 -9.58948 -9.50329 -9.08777 -8.92633 -7.94955 -7.77604 -6.27722 -4.73052 1.11164 1.17171 2.52877 3.10861 3.17714 3.21412 3.26594 3.72260 4.00085 4.17307 4.20930 4.42085 4.51714 4.67674 4.75290 4.88008 5.02247 5.12328 5.30268 5.52565 5.63083 5.69290 5.72996 5.88527 5.90849 6.24616 6.63921 6.73010 7.29058 7.36597 7.65556 7.83057 7.92764 8.19524 8.25481 8.94177 9.31298 10.46332 10.65357 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.032262 B = 0.004522 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.673965 B = 6189.875407 C = 6299.652899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.087 3.913 3 Si 0.912 3.088 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.556 3.444 10 O -0.577 6.577 11 N -0.736 5.736 12 C 0.144 3.856 13 H 0.123 0.877 14 C 0.449 3.551 15 O -0.486 6.486 16 O -0.518 6.518 17 C 0.148 3.852 18 H 0.133 0.867 19 O -0.543 6.543 20 C -0.074 4.074 21 C -0.119 4.119 22 C 0.092 3.908 23 N -0.485 5.485 24 C 0.091 3.909 25 C -0.155 4.155 26 H 0.270 0.730 27 H 0.393 0.607 28 H 0.395 0.605 29 H 0.371 0.629 30 H 0.129 0.871 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.335 -15.329 1.310 15.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.133 4.133 3 Si 0.736 3.264 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.362 3.638 10 O -0.460 6.460 11 N -0.392 5.392 12 C 0.034 3.966 13 H 0.140 0.860 14 C 0.287 3.713 15 O -0.371 6.371 16 O -0.330 6.330 17 C 0.088 3.912 18 H 0.150 0.850 19 O -0.349 6.349 20 C -0.083 4.083 21 C -0.139 4.139 22 C -0.065 4.065 23 N -0.194 5.194 24 C -0.066 4.066 25 C -0.175 4.175 26 H 0.080 0.920 27 H 0.227 0.773 28 H 0.254 0.746 29 H 0.220 0.780 30 H 0.147 0.853 31 H 0.170 0.830 32 H 0.172 0.828 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.285 -15.471 2.069 15.775 hybrid contribution 0.717 1.406 -1.378 2.095 sum 3.002 -14.065 0.690 14.399 Atomic orbital electron populations 1.70013 1.07133 1.27509 1.34733 1.25725 0.94672 1.00438 0.92511 0.86305 0.80115 0.81031 0.78944 1.19668 1.20394 1.18753 1.20816 0.93747 0.88855 1.53905 0.91074 1.18339 0.87246 0.82175 0.76029 1.90611 1.14057 1.86310 1.55018 1.46117 1.09179 1.02508 1.81374 1.20805 0.99003 0.87851 0.88974 0.85959 1.24818 0.74752 0.77725 0.94032 1.90732 1.50126 1.49746 1.46452 1.84868 1.70541 1.41876 1.35724 1.21135 0.84979 0.88928 0.96173 0.84958 1.86657 1.31567 1.90394 1.26244 1.20768 0.96980 0.96235 0.94336 1.21720 0.99412 0.94564 0.98209 1.22610 0.93479 0.95145 0.95272 1.67619 1.18918 1.32662 1.00207 1.22665 0.96202 0.90621 0.97062 1.21996 0.98505 0.98649 0.98307 0.91959 0.77301 0.74628 0.78041 0.85318 0.83009 0.82807 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.79 11.83 55.55 0.66 -22.14 16 2 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 3 Si 0.91 20.03 29.56 -169.99 -5.02 15.01 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.54 -15.03 9.54 -35.63 -0.34 -15.37 16 8 H 0.07 1.82 7.85 -52.48 -0.41 1.41 16 9 C 0.56 15.53 7.58 -12.99 -0.10 15.43 16 10 O -0.58 -18.29 14.68 5.20 0.08 -18.22 16 11 N -0.74 -15.90 4.59 -56.35 -0.26 -16.16 16 12 C 0.14 2.57 2.37 -69.08 -0.16 2.40 16 13 H 0.12 2.39 7.58 -51.93 -0.39 2.00 16 14 C 0.45 7.92 6.31 36.00 0.23 8.14 16 15 O -0.49 -10.66 17.08 -18.75 -0.32 -10.98 16 16 O -0.52 -6.65 8.76 -39.25 -0.34 -7.00 16 17 C 0.15 1.95 3.18 -27.88 -0.09 1.87 16 18 H 0.13 1.63 8.07 -51.93 -0.42 1.21 16 19 O -0.54 -7.08 12.82 -35.23 -0.45 -7.53 16 20 C -0.07 -0.89 4.61 -104.31 -0.48 -1.37 16 21 C -0.12 -1.27 6.46 -39.44 -0.25 -1.53 16 22 C 0.09 0.98 11.18 -17.55 -0.20 0.78 16 23 N -0.48 -5.94 10.36 -13.26 -0.14 -6.08 16 24 C 0.09 1.01 11.18 -17.55 -0.20 0.81 16 25 C -0.15 -1.72 9.80 -39.44 -0.39 -2.11 16 26 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 27 H 0.39 7.73 8.36 -40.82 -0.34 7.39 16 28 H 0.40 3.51 9.10 45.56 0.41 3.93 16 29 H 0.37 4.16 6.37 45.56 0.29 4.45 16 30 H 0.13 1.15 5.76 -52.49 -0.30 0.84 16 31 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 294.27 15.07 4.43 4.43 Total: -1.00 -37.82 294.27 -5.01 -42.83 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -1.57 Total: 14.45 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: -2.07 Total: 11.37 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.26 Total: -44.37 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -1.04 Total: -43.72 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -37.82 -5.01 -42.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574242674.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.738 kcal (2) G-P(sol) polarization free energy of solvation -37.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds