Wall clock time and date at job start Tue Mar 31 2020 01:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86799 * 119.99945 * 2 1 4 4 H 1.48497 * 109.47212 * 269.99245 * 3 2 1 5 5 H 1.48499 * 109.47174 * 29.99822 * 3 2 1 6 6 H 1.48511 * 109.47149 * 149.99655 * 3 2 1 7 7 C 1.40047 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00224 * 180.02562 * 7 2 1 9 9 C 1.46375 * 120.00517 * 0.02562 * 7 2 1 10 10 O 1.21692 * 119.99339 * 0.02562 * 9 7 2 11 11 N 1.34775 * 120.00446 * 180.02562 * 9 7 2 12 12 C 1.46497 * 119.99721 * 180.02562 * 11 9 7 13 13 H 1.08997 * 109.47720 * 324.99525 * 12 11 9 14 14 C 1.50698 * 109.47481 * 85.00048 * 12 11 9 15 15 O 1.20828 * 119.99703 * 359.97438 * 14 12 11 16 16 O 1.34228 * 120.00535 * 179.97438 * 14 12 11 17 17 C 1.53001 * 109.46835 * 204.99869 * 12 11 9 18 18 H 1.08999 * 109.47164 * 54.99914 * 17 12 11 19 19 O 1.42903 * 109.47171 * 294.99648 * 17 12 11 20 20 C 1.50707 * 109.47316 * 175.00332 * 17 12 11 21 21 C 1.38650 * 120.79272 * 84.71505 * 20 17 12 22 22 C 1.38198 * 119.16162 * 179.75451 * 21 20 17 23 23 N 1.31869 * 120.76223 * 0.53955 * 22 21 20 24 24 C 1.31870 * 121.73197 * 359.73372 * 23 22 21 25 25 C 1.38209 * 120.75841 * 359.97438 * 24 23 22 26 26 H 0.96995 * 119.99744 * 0.02562 * 1 2 3 27 27 H 0.96996 * 120.00092 * 359.97438 * 11 9 7 28 28 H 0.96702 * 117.00178 * 180.02562 * 16 14 12 29 29 H 0.96700 * 114.00311 * 300.00378 * 19 17 12 30 30 H 1.08000 * 120.41463 * 0.02562 * 21 20 17 31 31 H 1.08000 * 119.61623 * 180.24810 * 22 21 20 32 32 H 1.07987 * 119.62261 * 180.02562 * 24 23 22 33 33 H 1.07995 * 120.41687 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4884 2.0463 -1.4000 5 1 1.4381 2.6527 0.7000 6 1 3.5383 1.4402 0.7002 7 6 2.0069 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0582 -2.4805 -0.0004 11 7 1.9490 -3.6477 0.0016 12 6 1.2164 -4.9164 0.0010 13 1 0.3051 -4.8101 0.5894 14 6 0.8596 -5.2899 -1.4147 15 8 1.1836 -4.5699 -2.3293 16 8 0.1819 -6.4223 -1.6596 17 6 2.0929 -6.0116 0.6119 18 1 2.4241 -5.7014 1.6029 19 8 3.2312 -6.2320 -0.2235 20 6 1.2980 -7.2870 0.7242 21 6 1.1943 -8.1559 -0.3513 22 6 0.4609 -9.3186 -0.2094 23 7 -0.1443 -9.5997 0.9279 24 6 -0.0721 -8.7943 1.9696 25 6 0.6481 -7.6166 1.9038 26 1 -0.4849 0.8400 -0.0004 27 1 2.9190 -3.6478 0.0020 28 1 -0.0238 -6.6198 -2.5837 29 1 3.0111 -6.5112 -1.1227 30 1 1.6843 -7.9290 -1.2866 31 1 0.3787 -10.0026 -1.0412 32 1 -0.5810 -9.0584 2.8847 33 1 0.7039 -6.9612 2.7604 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574242674.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:41 Heat of formation + Delta-G solvation = -165.257161 kcal Electronic energy + Delta-G solvation = -22095.115094 eV Core-core repulsion = 18505.927086 eV Total energy + Delta-G solvation = -3589.188008 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.08364 -40.78291 -39.42173 -38.35186 -37.14630 -35.14802 -34.45621 -33.65284 -32.04077 -30.52761 -28.12046 -26.29065 -24.36203 -23.74153 -22.35313 -21.43023 -19.55255 -19.28921 -18.75195 -18.14827 -17.74366 -17.20942 -16.91256 -16.80251 -16.20578 -15.88069 -15.56828 -15.35307 -14.89130 -14.64006 -14.50921 -14.37994 -14.34632 -13.59893 -13.16960 -12.84289 -12.78210 -12.67319 -12.65627 -12.34022 -12.04102 -11.76142 -11.65778 -10.96572 -10.56858 -10.38551 -10.02025 -9.92225 -9.76209 -8.34272 -6.90592 0.23792 0.30981 1.09800 1.39702 1.40439 1.56593 1.89957 2.22718 2.48306 2.70379 2.93924 3.12671 3.46423 3.58566 3.65036 3.69348 3.87910 4.15279 4.20511 4.25314 4.34882 4.62232 4.74308 4.94627 5.02799 5.28981 5.36237 5.51160 5.79691 5.82335 5.93299 6.17183 6.32783 6.82647 6.95364 7.09350 7.37249 8.38551 8.60913 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.032262 B = 0.004522 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.673965 B = 6189.875407 C = 6299.652899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.030 3.970 3 Si 0.999 3.001 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.246 1.246 7 C -0.569 4.569 8 H 0.089 0.911 9 C 0.544 3.456 10 O -0.626 6.626 11 N -0.727 5.727 12 C 0.139 3.861 13 H 0.103 0.897 14 C 0.461 3.539 15 O -0.534 6.534 16 O -0.496 6.496 17 C 0.166 3.834 18 H 0.142 0.858 19 O -0.546 6.546 20 C -0.088 4.088 21 C -0.121 4.121 22 C 0.088 3.912 23 N -0.506 5.506 24 C 0.083 3.917 25 C -0.161 4.161 26 H 0.275 0.725 27 H 0.403 0.597 28 H 0.419 0.581 29 H 0.380 0.620 30 H 0.146 0.854 31 H 0.179 0.821 32 H 0.176 0.824 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.592 -16.040 1.364 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.169 1.169 7 C -0.605 4.605 8 H 0.107 0.893 9 C 0.350 3.650 10 O -0.513 6.513 11 N -0.382 5.382 12 C 0.029 3.971 13 H 0.121 0.879 14 C 0.301 3.699 15 O -0.423 6.423 16 O -0.309 6.309 17 C 0.106 3.894 18 H 0.160 0.840 19 O -0.352 6.352 20 C -0.097 4.097 21 C -0.141 4.141 22 C -0.069 4.069 23 N -0.215 5.215 24 C -0.073 4.073 25 C -0.180 4.180 26 H 0.085 0.915 27 H 0.239 0.761 28 H 0.280 0.720 29 H 0.229 0.771 30 H 0.164 0.836 31 H 0.196 0.804 32 H 0.193 0.807 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.569 -16.273 2.120 16.795 hybrid contribution 0.278 1.431 -1.413 2.030 sum 3.847 -14.842 0.707 15.349 Atomic orbital electron populations 1.70171 1.09518 1.29085 1.36091 1.26973 0.95548 1.04965 0.91105 0.85005 0.78949 0.74976 0.79299 1.19043 1.19534 1.16877 1.21400 0.94866 0.89840 1.54371 0.89324 1.18600 0.86824 0.84058 0.75547 1.90561 1.16029 1.87557 1.57190 1.45611 1.09551 1.02764 1.80232 1.21020 0.98912 0.87636 0.89491 0.87913 1.24539 0.74145 0.77990 0.93221 1.90726 1.52351 1.51531 1.47679 1.84802 1.68986 1.39331 1.37762 1.20932 0.84349 0.88075 0.96010 0.84035 1.86651 1.31345 1.90311 1.26911 1.20715 0.97692 0.95914 0.95409 1.21931 0.99242 0.94357 0.98523 1.23069 0.92750 0.95458 0.95609 1.67669 1.19586 1.33305 1.00966 1.23064 0.96108 0.90375 0.97725 1.22226 0.98133 0.99019 0.98655 0.91468 0.76141 0.71967 0.77055 0.83619 0.80413 0.80653 0.83061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.09 11.83 21.84 0.26 -49.83 16 2 C 0.03 1.64 5.50 85.30 0.47 2.11 16 3 Si 1.00 40.95 29.56 68.60 2.03 42.98 16 4 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 6 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 7 C -0.57 -32.24 9.54 24.83 0.24 -32.00 16 8 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 9 C 0.54 31.20 7.58 86.36 0.65 31.86 16 10 O -0.63 -41.26 14.68 -4.32 -0.06 -41.33 16 11 N -0.73 -31.81 4.59 -450.41 -2.07 -33.88 16 12 C 0.14 4.95 2.37 44.25 0.11 5.06 16 13 H 0.10 4.12 7.58 -2.39 -0.02 4.11 16 14 C 0.46 16.06 6.31 71.24 0.45 16.51 16 15 O -0.53 -23.57 17.08 21.96 0.38 -23.20 16 16 O -0.50 -11.85 8.76 -51.40 -0.45 -12.30 16 17 C 0.17 4.20 3.18 29.85 0.09 4.30 16 18 H 0.14 3.31 8.07 -2.39 -0.02 3.29 16 19 O -0.55 -13.29 12.82 -148.98 -1.91 -15.20 16 20 C -0.09 -1.96 4.61 -19.67 -0.09 -2.05 16 21 C -0.12 -2.30 6.46 22.36 0.14 -2.16 16 22 C 0.09 1.66 11.18 84.68 0.95 2.61 16 23 N -0.51 -11.38 10.36 -195.85 -2.03 -13.41 16 24 C 0.08 1.70 11.18 84.68 0.95 2.64 16 25 C -0.16 -3.32 9.80 22.36 0.22 -3.10 16 26 H 0.28 15.24 8.29 -92.71 -0.77 14.47 16 27 H 0.40 15.83 8.36 -92.71 -0.78 15.06 16 28 H 0.42 6.41 9.10 -74.06 -0.67 5.73 16 29 H 0.38 7.78 6.37 -74.06 -0.47 7.30 16 30 H 0.15 2.18 5.76 -2.91 -0.02 2.16 16 31 H 0.18 2.27 8.06 -2.91 -0.02 2.24 16 32 H 0.18 2.60 8.06 -2.92 -0.02 2.58 16 33 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -84.34 294.27 -0.40 -84.74 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: -0.72 Total: 35.64 kcal Atomic # 6 Polarization: 21.60 SS G_CDS: 4.18 Total: 25.77 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -3.84 Total: -97.12 kcal Atomic # 8 Polarization: -89.97 SS G_CDS: -2.05 Total: -92.02 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -84.34 -0.40 -84.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574242674.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.519 kcal (2) G-P(sol) polarization free energy of solvation -84.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds