Wall clock time and date at job start Tue Mar 31 2020 01:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86804 * 119.99592 * 2 1 4 4 H 1.48500 * 109.47026 * 90.00074 * 3 2 1 5 5 H 1.48500 * 109.46867 * 209.99825 * 3 2 1 6 6 H 1.48497 * 109.47206 * 329.99383 * 3 2 1 7 7 C 1.40020 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99635 * 15.97839 * 7 2 1 9 9 C 1.41334 * 120.00394 * 195.97162 * 7 2 1 10 10 C 1.40609 * 119.79049 * 188.66140 * 9 7 2 11 11 C 1.38308 * 119.12896 * 179.76907 * 10 9 7 12 12 C 1.38695 * 118.66587 * 0.50374 * 11 10 9 13 13 C 1.39632 * 119.49996 * 359.74055 * 12 11 10 14 14 N 1.39264 * 119.57546 * 180.02562 * 13 12 11 15 15 C 1.34782 * 120.00202 * 18.84607 * 14 13 12 16 16 O 1.21280 * 119.99734 * 5.58707 * 15 14 13 17 17 C 1.50698 * 120.00232 * 185.58287 * 15 14 13 18 18 O 1.42893 * 109.47174 * 180.02562 * 17 15 14 19 19 C 1.42901 * 114.00090 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.47466 * 179.97438 * 19 18 17 21 21 O 1.20832 * 119.99485 * 0.02562 * 20 19 18 22 22 O 1.34224 * 120.00125 * 179.97438 * 20 19 18 23 23 N 1.31924 * 120.84931 * 0.02562 * 13 12 11 24 24 H 0.96998 * 120.00071 * 174.92483 * 1 2 3 25 25 H 1.07999 * 120.43505 * 0.02711 * 10 9 7 26 26 H 1.08005 * 120.66749 * 180.22409 * 11 10 9 27 27 H 1.08004 * 120.25108 * 179.76693 * 12 11 10 28 28 H 0.97001 * 120.00229 * 198.85337 * 14 13 12 29 29 H 1.09004 * 109.46750 * 300.00395 * 17 15 14 30 30 H 1.08993 * 109.47346 * 59.99999 * 17 15 14 31 31 H 1.09005 * 109.47290 * 300.00147 * 19 18 17 32 32 H 1.08997 * 109.47320 * 60.00100 * 19 18 17 33 33 H 0.96701 * 116.99883 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0465 1.4001 5 1 3.5389 1.4403 -0.7000 6 1 1.4388 2.6527 -0.7002 7 6 2.0076 -1.2126 0.0005 8 1 1.4989 -2.1300 -0.2565 9 6 3.3800 -1.2361 0.3373 10 6 4.1224 -2.4173 0.1617 11 6 5.4656 -2.4235 0.4912 12 6 6.0324 -1.2624 0.9952 13 6 5.2411 -0.1226 1.1515 14 7 5.8088 1.0443 1.6570 15 6 7.1467 1.2064 1.6369 16 8 7.8490 0.3839 1.0883 17 6 7.7698 2.4099 2.2960 18 8 9.1892 2.3565 2.1404 19 6 9.8807 3.4581 2.7325 20 6 11.3627 3.2994 2.5097 21 8 11.7835 2.3414 1.9054 22 8 12.2150 4.2227 2.9817 23 7 3.9626 -0.1370 0.8265 24 1 -0.4850 -0.8367 -0.0743 25 1 3.6508 -3.3067 -0.2294 26 1 6.0601 -3.3161 0.3628 27 1 7.0781 -1.2399 1.2645 28 1 5.2414 1.7403 2.0237 29 1 7.3874 3.3180 1.8300 30 1 7.5202 2.4131 3.3570 31 1 9.5417 4.3879 2.2755 32 1 9.6752 3.4833 3.8026 33 1 13.1562 4.0779 2.8137 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574479140.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:22 Heat of formation + Delta-G solvation = -160.307175 kcal Electronic energy + Delta-G solvation = -20834.044058 eV Core-core repulsion = 17245.070697 eV Total energy + Delta-G solvation = -3588.973361 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.71651 -41.22121 -39.97730 -38.55612 -37.04406 -36.24761 -35.38309 -32.95911 -31.88118 -30.42225 -28.26049 -27.13879 -23.93494 -23.53332 -22.76215 -21.54083 -20.33045 -19.36721 -18.87654 -18.36354 -17.80250 -17.54361 -16.97525 -16.92527 -16.78247 -16.29781 -15.86953 -15.55837 -15.30364 -14.86610 -14.44133 -14.27494 -14.16649 -13.74781 -13.27623 -13.21829 -12.87054 -12.67837 -12.56950 -12.15961 -11.84374 -11.58519 -11.56025 -11.03190 -10.89384 -10.71920 -10.39799 -9.84715 -9.32285 -9.22366 -6.79850 0.49269 0.75691 1.17687 1.26781 1.51836 1.54083 1.75221 1.97285 2.06782 2.43198 2.64171 3.13221 3.52535 3.59131 4.08348 4.12665 4.21948 4.23758 4.34672 4.35181 4.42295 4.65361 4.69047 4.79151 5.35052 5.38459 5.42396 5.58117 5.72645 5.75523 5.89372 5.95087 6.32392 6.41828 6.66248 6.98604 7.06301 7.51575 7.93453 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.030411 B = 0.003763 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.492133 B = 7439.309171 C = 8237.125859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.020 3.980 3 Si 1.175 2.825 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.321 1.321 7 C -0.511 4.511 8 H 0.067 0.933 9 C 0.258 3.742 10 C -0.294 4.294 11 C -0.031 4.031 12 C -0.313 4.313 13 C 0.377 3.623 14 N -0.646 5.646 15 C 0.509 3.491 16 O -0.538 6.538 17 C 0.059 3.941 18 O -0.390 6.390 19 C 0.066 3.934 20 C 0.480 3.520 21 O -0.551 6.551 22 O -0.503 6.503 23 N -0.604 5.604 24 H 0.281 0.719 25 H 0.114 0.886 26 H 0.139 0.861 27 H 0.142 0.858 28 H 0.425 0.575 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.675 13.313 9.424 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.198 4.198 3 Si 1.004 2.996 4 H -0.189 1.189 5 H -0.221 1.221 6 H -0.253 1.253 7 C -0.544 4.544 8 H 0.086 0.914 9 C 0.133 3.867 10 C -0.316 4.316 11 C -0.056 4.056 12 C -0.338 4.338 13 C 0.145 3.855 14 N -0.295 5.295 15 C 0.297 3.703 16 O -0.414 6.414 17 C -0.019 4.019 18 O -0.310 6.310 19 C -0.010 4.010 20 C 0.323 3.677 21 O -0.441 6.441 22 O -0.318 6.318 23 N -0.329 5.329 24 H 0.092 0.908 25 H 0.132 0.868 26 H 0.157 0.843 27 H 0.160 0.840 28 H 0.263 0.737 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 16.234 14.667 9.068 23.683 hybrid contribution 0.408 -2.934 -0.415 2.991 sum 16.642 11.733 8.653 22.125 Atomic orbital electron populations 1.70641 1.08537 1.32908 1.32544 1.28547 0.95472 1.07889 0.87869 0.81757 0.71345 0.68080 0.78435 1.18915 1.22095 1.25272 1.20660 0.94053 0.96837 1.42848 0.91447 1.18370 0.93007 0.87331 0.87969 1.21774 0.95460 0.99721 1.14690 1.21304 0.93883 0.97507 0.92864 1.21849 1.02136 0.93345 1.16437 1.18364 0.89073 0.86175 0.91924 1.43137 1.07662 1.18657 1.60018 1.21304 0.80773 0.88651 0.79575 1.90671 1.62090 1.45177 1.43414 1.22357 0.80688 0.95360 1.03497 1.88001 1.18037 1.45875 1.79053 1.22032 0.84527 0.91682 1.02806 1.23443 0.90936 0.78978 0.74331 1.90807 1.80099 1.33244 1.39948 1.84411 1.24279 1.49487 1.73596 1.66196 1.11174 1.29989 1.25537 0.90779 0.86836 0.84313 0.84028 0.73682 0.84981 0.84666 0.84727 0.84628 0.70526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.87 13.65 21.84 0.30 -44.57 16 2 C 0.02 1.06 5.51 85.29 0.47 1.53 16 3 Si 1.17 53.75 25.93 68.60 1.78 55.53 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.29 -13.91 6.55 99.48 0.65 -13.25 16 6 H -0.32 -14.23 7.11 99.48 0.71 -13.52 16 7 C -0.51 -28.40 9.51 23.46 0.22 -28.18 16 8 H 0.07 3.82 8.06 -2.91 -0.02 3.79 16 9 C 0.26 13.65 6.27 40.20 0.25 13.91 16 10 C -0.29 -14.16 9.83 22.87 0.22 -13.94 16 11 C -0.03 -1.37 10.15 22.40 0.23 -1.14 16 12 C -0.31 -14.02 8.83 22.72 0.20 -13.82 16 13 C 0.38 16.63 7.51 133.24 1.00 17.63 16 14 N -0.65 -21.16 5.41 -308.38 -1.67 -22.83 16 15 C 0.51 15.38 7.75 87.66 0.68 16.06 16 16 O -0.54 -22.08 13.30 16.01 0.21 -21.87 16 17 C 0.06 0.94 6.42 71.24 0.46 1.40 16 18 O -0.39 -8.61 9.41 -120.75 -1.14 -9.75 16 19 C 0.07 0.72 6.53 71.24 0.47 1.18 16 20 C 0.48 8.24 8.40 71.24 0.60 8.84 16 21 O -0.55 -16.18 17.26 28.38 0.49 -15.69 16 22 O -0.50 -4.71 13.42 -51.36 -0.69 -5.40 16 23 N -0.60 -29.78 5.07 -186.37 -0.95 -30.72 16 24 H 0.28 14.93 8.73 -92.71 -0.81 14.12 16 25 H 0.11 5.14 8.06 -2.91 -0.02 5.11 16 26 H 0.14 5.03 8.06 -2.91 -0.02 5.01 16 27 H 0.14 6.32 5.33 -3.17 -0.02 6.31 16 28 H 0.42 10.79 8.83 -92.71 -0.82 9.97 16 29 H 0.13 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.14 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.43 1.00 9.10 -74.06 -0.67 0.32 16 Total: -1.00 -83.99 299.66 2.74 -81.25 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -0.40 Total: 10.58 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 4.80 Total: 3.47 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -2.32 Total: -98.12 kcal Atomic # 8 Polarization: -51.59 SS G_CDS: -1.12 Total: -52.71 kcal Atomic # 14 Polarization: 53.75 SS G_CDS: 1.78 Total: 55.53 kcal Total: -83.99 2.74 -81.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479140.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.052 kcal (2) G-P(sol) polarization free energy of solvation -83.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds