Wall clock time and date at job start Tue Mar 31 2020 01:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00035 * 2 1 4 4 N 1.46498 * 109.46981 * 125.00332 * 3 2 1 5 5 C 1.46503 * 119.99734 * 265.11759 * 4 3 2 6 6 C 1.50700 * 109.47111 * 263.22585 * 5 4 3 7 7 H 1.07995 * 120.00483 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99740 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99957 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 120.00334 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.46685 * 89.99780 * 10 8 6 12 12 H 1.48501 * 109.47083 * 210.00154 * 10 8 6 13 13 H 1.48499 * 109.46626 * 329.99984 * 10 8 6 14 14 C 1.34773 * 120.00565 * 85.11980 * 4 3 2 15 15 O 1.21592 * 119.99490 * 4.11159 * 14 4 3 16 16 C 1.47498 * 120.00522 * 184.10458 * 14 4 3 17 17 C 1.36684 * 126.82952 * 173.30490 * 16 14 4 18 18 C 1.42178 * 103.78954 * 179.97438 * 17 16 14 19 19 C 1.48226 * 126.84841 * 180.02562 * 18 17 16 20 20 O 1.21419 * 120.00031 * 359.97438 * 19 18 17 21 21 O 1.34644 * 120.00362 * 180.02562 * 19 18 17 22 22 N 1.30991 * 106.30158 * 0.02562 * 18 17 16 23 23 O 1.20867 * 111.80985 * 359.73826 * 22 18 17 24 24 H 1.08000 * 120.00430 * 179.97438 * 1 2 3 25 25 H 1.08004 * 119.99596 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99373 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47196 * 5.00096 * 3 2 1 28 28 H 1.09003 * 109.47078 * 244.99938 * 3 2 1 29 29 H 1.08998 * 109.47385 * 23.22657 * 5 4 3 30 30 H 1.09001 * 109.46832 * 143.23013 * 5 4 3 31 31 H 0.97000 * 120.00153 * 179.97438 * 9 8 6 32 32 H 1.07997 * 128.10758 * 359.96694 * 17 16 14 33 33 H 0.96695 * 117.00469 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5952 1.9614 2.3927 6 6 3.1228 3.3723 2.4387 7 1 3.6972 3.7613 1.6110 8 6 2.8713 4.1669 3.5370 9 7 3.3313 5.3983 3.5769 10 14 1.8771 3.4944 4.9684 11 1 2.7913 2.8568 5.9497 12 1 1.1421 4.6049 5.6255 13 1 0.9077 2.4870 4.4677 14 6 4.2163 0.7772 1.0119 15 8 4.5753 0.3214 -0.0566 16 6 5.1189 0.7234 2.1773 17 6 6.3261 0.0866 2.2499 18 6 6.7680 0.3480 3.5757 19 6 8.0328 -0.1107 4.1979 20 8 8.8146 -0.7844 3.5582 21 8 8.3143 0.2189 5.4726 22 7 5.8346 1.0751 4.1377 23 8 4.9197 1.2957 3.3794 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 1.5076 1.9778 2.4629 30 1 3.0046 1.3930 3.2278 31 1 3.1541 5.9575 4.3495 32 1 6.8270 -0.4821 1.4804 33 1 9.1508 -0.1036 5.8350 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826514.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:10 Heat of formation + Delta-G solvation = -23.142274 kcal Electronic energy + Delta-G solvation = -21837.653003 eV Core-core repulsion = 18254.627559 eV Total energy + Delta-G solvation = -3583.025444 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.93469 -40.15681 -39.43177 -36.32247 -35.96023 -34.02655 -33.60996 -32.37840 -31.68134 -28.32896 -26.37693 -25.72159 -23.47952 -22.65638 -21.89948 -20.33907 -19.52879 -18.07607 -17.75958 -17.40990 -16.99536 -16.50398 -16.05922 -15.66015 -15.55281 -14.86630 -14.46485 -14.19717 -13.72598 -13.47328 -13.21431 -13.03962 -12.48843 -11.92772 -11.82484 -11.80384 -11.65818 -11.22011 -11.09211 -11.05979 -10.72764 -10.49186 -10.35121 -9.95774 -9.67168 -9.61230 -9.26992 -8.73324 -8.10474 -6.23700 -4.27130 0.91234 1.21314 2.30039 2.53231 2.80424 2.90159 3.21172 3.25392 3.30097 3.35946 3.65160 4.06243 4.26933 4.74525 4.92239 5.07719 5.14861 5.18816 5.31361 5.37359 5.71526 5.83497 5.97829 6.09416 6.16869 6.22316 6.57059 6.72185 6.78144 7.05081 7.34540 7.59670 7.71097 8.04370 8.27224 8.41006 8.79414 9.34449 10.88573 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.013004 B = 0.007355 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.651223 B = 3805.844856 C = 5378.629203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.162 4.162 3 C 0.144 3.856 4 N -0.568 5.568 5 C 0.201 3.799 6 C -0.545 4.545 7 H 0.080 0.920 8 C 0.086 3.914 9 N -0.886 5.886 10 Si 0.863 3.137 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.263 1.263 14 C 0.603 3.397 15 O -0.535 6.535 16 C -0.054 4.054 17 C -0.119 4.119 18 C -0.042 4.042 19 C 0.579 3.421 20 O -0.499 6.499 21 O -0.496 6.496 22 N -0.296 5.296 23 O 0.200 5.800 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.268 0.732 32 H 0.192 0.808 33 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.753 -10.517 -0.281 10.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.181 4.181 3 C 0.022 3.978 4 N -0.297 5.297 5 C 0.080 3.920 6 C -0.583 4.583 7 H 0.098 0.902 8 C -0.119 4.119 9 N -0.523 5.523 10 Si 0.689 3.311 11 H -0.192 1.192 12 H -0.208 1.208 13 H -0.188 1.188 14 C 0.388 3.612 15 O -0.414 6.414 16 C -0.119 4.119 17 C -0.142 4.142 18 C -0.196 4.196 19 C 0.421 3.579 20 O -0.385 6.385 21 O -0.307 6.307 22 N 0.015 4.985 23 O 0.108 5.892 24 H 0.114 0.886 25 H 0.118 0.882 26 H 0.126 0.874 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.209 0.791 33 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 0.782 -10.111 0.235 10.144 hybrid contribution 0.355 -0.637 0.599 0.944 sum 1.136 -10.749 0.834 10.841 Atomic orbital electron populations 1.23832 0.95720 1.01847 1.01038 1.23368 0.96158 0.99172 0.99416 1.20594 0.91986 0.95365 0.89867 1.47896 1.12576 1.53391 1.15792 1.20162 0.97284 0.94455 0.80112 1.21227 1.36289 0.94948 1.05806 0.90234 1.24772 0.94909 0.94495 0.97731 1.69872 1.44585 1.07441 1.30394 0.87031 0.81083 0.79336 0.83602 1.19200 1.20826 1.18765 1.16476 0.80980 0.79199 0.84555 1.90804 1.75150 1.49864 1.25612 1.24220 0.98355 1.00152 0.89165 1.22630 0.93845 1.01916 0.95799 1.22063 0.96915 1.06329 0.94311 1.19089 0.83432 0.75870 0.79531 1.90915 1.47935 1.36206 1.63442 1.84632 1.45510 1.72749 1.27824 1.74289 0.96699 1.10479 1.17065 1.85508 1.33410 1.52708 1.17600 0.88631 0.88243 0.87424 0.88814 0.89269 0.93613 0.94538 0.92241 0.79123 0.72295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.21 14.32 29.01 0.42 -1.79 16 2 C -0.16 -2.24 9.81 -36.03 -0.35 -2.59 16 3 C 0.14 2.29 5.80 -5.20 -0.03 2.26 16 4 N -0.57 -10.80 2.47 -177.68 -0.44 -11.24 16 5 C 0.20 4.22 3.81 -5.19 -0.02 4.20 16 6 C -0.54 -13.79 9.01 -34.44 -0.31 -14.10 16 7 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 8 C 0.09 2.26 5.47 -17.82 -0.10 2.17 16 9 N -0.89 -25.35 13.96 55.43 0.77 -24.58 16 10 Si 0.86 19.59 27.47 -169.99 -4.67 14.92 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 14 C 0.60 11.68 7.57 -12.49 -0.09 11.58 16 15 O -0.54 -10.75 16.55 5.28 0.09 -10.67 16 16 C -0.05 -1.01 6.85 -36.37 -0.25 -1.26 16 17 C -0.12 -1.98 10.78 -38.63 -0.42 -2.40 16 18 C -0.04 -0.73 7.22 -82.61 -0.60 -1.32 16 19 C 0.58 8.67 8.36 34.84 0.29 8.96 16 20 O -0.50 -7.95 17.73 -19.20 -0.34 -8.29 16 21 O -0.50 -6.01 13.44 -40.34 -0.54 -6.55 16 22 N -0.30 -5.79 12.09 33.36 0.40 -5.39 16 23 O 0.20 4.09 7.32 15.62 0.11 4.20 16 24 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 25 H 0.10 1.11 7.84 -52.48 -0.41 0.70 16 26 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 27 H 0.09 1.43 7.69 -51.93 -0.40 1.03 16 28 H 0.09 1.41 7.52 -51.93 -0.39 1.02 16 29 H 0.05 0.93 7.08 -51.93 -0.37 0.56 16 30 H 0.04 0.77 4.89 -51.93 -0.25 0.52 16 31 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.19 2.74 8.06 -52.49 -0.42 2.32 16 33 H 0.42 2.53 9.11 45.56 0.42 2.94 16 LS Contribution 305.44 15.07 4.60 4.60 Total: -1.00 -31.00 305.44 -3.74 -34.74 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -2.27 Total: 2.54 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -1.46 Total: 5.71 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.74 Total: -41.20 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.68 Total: -21.31 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.67 Total: 14.92 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.00 -3.74 -34.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826514.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.598 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds