Wall clock time and date at job start Tue Mar 31 2020 01:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47138 * 2 1 4 4 H 1.08996 * 109.47105 * 305.17478 * 3 2 1 5 5 C 1.50699 * 109.46613 * 185.17696 * 3 2 1 6 6 H 1.08006 * 119.99768 * 244.94261 * 5 3 2 7 7 C 1.37873 * 120.00437 * 64.94592 * 5 3 2 8 8 N 1.31517 * 119.99924 * 7.03134 * 7 5 3 9 9 Si 1.86802 * 120.00337 * 187.02845 * 7 5 3 10 10 H 1.48496 * 109.47179 * 84.99112 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99485 * 9 7 5 12 12 H 1.48499 * 109.47109 * 324.99032 * 9 7 5 13 13 O 1.45195 * 109.47442 * 65.17890 * 3 2 1 14 14 C 1.34668 * 116.99863 * 270.00074 * 13 3 2 15 15 O 1.21408 * 119.99638 * 359.97438 * 14 13 3 16 16 C 1.48231 * 120.00037 * 179.97438 * 14 13 3 17 17 C 1.39711 * 119.99962 * 179.71699 * 16 14 13 18 18 N 1.31797 * 119.99917 * 179.75652 * 17 16 14 19 19 C 1.32975 * 119.99378 * 0.54531 * 18 17 16 20 20 C 1.48231 * 119.99497 * 179.70909 * 19 18 17 21 21 O 1.21408 * 119.99879 * 179.97438 * 20 19 18 22 22 O 1.34667 * 119.99886 * 359.97438 * 20 19 18 23 23 C 1.39663 * 120.00534 * 359.69263 * 19 18 17 24 24 N 1.31830 * 120.00211 * 0.03626 * 23 19 18 25 25 H 1.08991 * 109.47245 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47229 * 59.99802 * 1 2 3 27 27 H 1.09007 * 109.46710 * 300.00032 * 1 2 3 28 28 H 1.09005 * 109.46901 * 119.99772 * 2 1 3 29 29 H 1.08995 * 109.46803 * 239.99620 * 2 1 3 30 30 H 0.96998 * 120.00398 * 179.97438 * 8 7 5 31 31 H 1.08005 * 120.00030 * 0.02562 * 17 16 14 32 32 H 0.96699 * 116.99080 * 180.02562 * 22 20 19 33 33 H 1.07998 * 120.00288 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6030 1.9824 -0.8400 5 6 3.5416 1.4443 -0.1282 6 1 4.1522 1.8154 0.6817 7 6 4.1358 0.9723 -1.2793 8 7 3.3951 0.6501 -2.3172 9 14 5.9930 0.7903 -1.3647 10 1 6.3887 -0.5214 -0.7922 11 1 6.4330 0.8653 -2.7811 12 1 6.6336 1.8825 -0.5889 13 8 1.6596 2.0904 1.2424 14 6 0.4727 2.7262 1.2619 15 8 -0.2251 2.7396 0.2684 16 6 0.0181 3.4098 2.4961 17 6 -1.2106 4.0745 2.5145 18 7 -1.6169 4.6782 3.6133 19 6 -0.8523 4.6638 4.7012 20 6 -1.3064 5.3483 5.9352 21 8 -0.6086 5.3348 6.9286 22 8 -2.4929 5.9850 5.9542 23 6 0.3782 4.0036 4.6814 24 7 0.7823 3.3952 3.5839 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 0.5139 0.8901 28 1 1.8934 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 3.8132 0.3184 -3.1272 31 1 -1.8295 4.0899 1.6295 32 1 -2.7458 6.4170 6.7815 33 1 0.9990 3.9916 5.5651 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589464457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:44 Heat of formation + Delta-G solvation = -124.997501 kcal Electronic energy + Delta-G solvation = -21137.391436 eV Core-core repulsion = 17549.949217 eV Total energy + Delta-G solvation = -3587.442219 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.77094 -40.29681 -39.47591 -36.59015 -36.06781 -34.90191 -33.52036 -32.29353 -31.48981 -27.71757 -26.83335 -25.02291 -23.58449 -22.84546 -21.48940 -19.90136 -19.04780 -18.15220 -17.86364 -17.46518 -16.52649 -16.36133 -16.11361 -15.68452 -15.28307 -14.79785 -14.56547 -14.36911 -13.52164 -13.12338 -12.91371 -12.36845 -12.07174 -12.01699 -11.70388 -11.61054 -11.42377 -11.41160 -11.31937 -11.02876 -10.72892 -10.42607 -10.26371 -9.93098 -9.88173 -9.54819 -9.49779 -8.93693 -8.52367 -6.25078 -4.29881 -0.44449 0.63808 1.77303 2.26780 2.71164 2.96425 3.23709 3.29495 3.33972 3.50571 3.58899 3.81559 3.96725 4.29711 4.53615 4.81991 5.08468 5.15590 5.30611 5.79817 5.90991 6.09309 6.16111 6.29301 6.57909 6.72209 6.79960 7.01157 7.02884 7.12031 7.41538 7.48055 7.57349 7.74595 8.01993 8.37482 8.80149 9.34624 10.83698 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.029805 B = 0.003816 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.217380 B = 7335.876320 C = 7923.404776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 C 0.217 3.783 4 H 0.057 0.943 5 C -0.525 4.525 6 H 0.071 0.929 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.910 3.090 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.271 1.271 13 O -0.324 6.324 14 C 0.509 3.491 15 O -0.490 6.490 16 C 0.097 3.903 17 C 0.104 3.896 18 N -0.387 5.387 19 C 0.049 3.951 20 C 0.551 3.449 21 O -0.496 6.496 22 O -0.490 6.490 23 C 0.116 3.884 24 N -0.382 5.382 25 H 0.036 0.964 26 H 0.056 0.944 27 H 0.031 0.969 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.267 0.733 31 H 0.198 0.802 32 H 0.417 0.583 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.830 6.975 12.683 17.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.168 4.168 3 C 0.165 3.835 4 H 0.074 0.926 5 C -0.562 4.562 6 H 0.089 0.911 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.737 3.263 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.238 6.238 14 C 0.349 3.651 15 O -0.379 6.379 16 C -0.045 4.045 17 C -0.058 4.058 18 N -0.104 5.104 19 C -0.091 4.091 20 C 0.392 3.608 21 O -0.383 6.383 22 O -0.300 6.300 23 C -0.046 4.046 24 N -0.099 5.099 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.214 0.786 32 H 0.276 0.724 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -9.668 6.673 12.071 16.843 hybrid contribution 0.700 0.099 0.323 0.778 sum -8.967 6.772 12.394 16.729 Atomic orbital electron populations 1.21881 0.98122 0.99429 1.00811 1.21955 0.92909 0.99162 1.02761 1.20885 0.95625 0.88745 0.78228 0.92561 1.20978 0.89274 1.43621 1.02364 0.91085 1.24886 0.99243 0.94959 0.94628 1.69960 1.35785 1.43229 1.03337 0.86313 0.83843 0.78920 0.77252 1.20191 1.21037 1.19611 1.86666 1.31962 1.60991 1.44171 1.20256 0.82137 0.77420 0.85251 1.90839 1.55426 1.58019 1.33596 1.22104 0.92863 0.96132 0.93382 1.23994 0.93805 0.90975 0.97060 1.68635 1.30825 1.12842 0.98138 1.21338 0.94569 1.00259 0.92967 1.20135 0.79055 0.75579 0.86040 1.90943 1.55310 1.57799 1.34225 1.84670 1.36110 1.64717 1.44489 1.24030 0.92868 0.90103 0.97556 1.68870 1.30564 1.12446 0.98024 0.94465 0.92454 0.95024 0.93429 0.88637 0.92293 0.78556 0.72423 0.78971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.57 37.16 0.32 -2.65 16 2 C -0.13 -3.06 5.53 -26.73 -0.15 -3.20 16 3 C 0.22 5.55 2.12 -27.88 -0.06 5.49 16 4 H 0.06 1.58 7.13 -51.93 -0.37 1.20 16 5 C -0.52 -14.32 8.83 -34.44 -0.30 -14.63 16 6 H 0.07 1.94 7.82 -52.48 -0.41 1.53 16 7 C 0.07 1.76 5.20 -17.82 -0.09 1.67 16 8 N -0.89 -24.49 12.01 55.43 0.67 -23.83 16 9 Si 0.91 20.70 29.54 -169.99 -5.02 15.68 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 O -0.32 -7.49 9.64 -40.41 -0.39 -7.88 16 14 C 0.51 10.10 6.42 34.84 0.22 10.32 16 15 O -0.49 -10.19 13.53 -19.19 -0.26 -10.45 16 16 C 0.10 1.54 6.76 -82.73 -0.56 0.98 16 17 C 0.10 1.36 10.77 -17.02 -0.18 1.17 16 18 N -0.39 -4.85 10.27 -9.30 -0.10 -4.95 16 19 C 0.05 0.57 6.76 -82.73 -0.56 0.01 16 20 C 0.55 5.56 8.33 34.84 0.29 5.85 16 21 O -0.50 -5.69 17.13 -19.19 -0.33 -6.02 16 22 O -0.49 -3.75 13.26 -40.40 -0.54 -4.29 16 23 C 0.12 1.40 10.77 -17.02 -0.18 1.21 16 24 N -0.38 -5.90 10.27 -9.30 -0.10 -6.00 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.22 7.80 -51.93 -0.41 0.81 16 27 H 0.03 0.62 6.05 -51.92 -0.31 0.30 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.10 2.43 6.65 -51.93 -0.35 2.08 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.20 2.20 7.64 -52.48 -0.40 1.80 16 32 H 0.42 0.97 9.11 45.56 0.42 1.39 16 33 H 0.19 1.82 7.64 -52.49 -0.40 1.42 16 LS Contribution 301.47 15.07 4.54 4.54 Total: -1.00 -31.37 301.47 -4.99 -36.36 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -2.21 Total: 0.60 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -1.26 Total: 6.23 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.47 Total: -34.77 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -1.51 Total: -28.63 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.37 -4.99 -36.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589464457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.642 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds