Wall clock time and date at job start Tue Mar 31 2020 01:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47138 * 2 1 4 4 H 1.08996 * 109.47105 * 305.17478 * 3 2 1 5 5 C 1.50699 * 109.46613 * 185.17696 * 3 2 1 6 6 H 1.08006 * 119.99768 * 244.94261 * 5 3 2 7 7 C 1.37873 * 120.00437 * 64.94592 * 5 3 2 8 8 N 1.31517 * 119.99924 * 7.03134 * 7 5 3 9 9 Si 1.86802 * 120.00337 * 187.02845 * 7 5 3 10 10 H 1.48496 * 109.47179 * 84.99112 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99485 * 9 7 5 12 12 H 1.48499 * 109.47109 * 324.99032 * 9 7 5 13 13 O 1.45195 * 109.47442 * 65.17890 * 3 2 1 14 14 C 1.34668 * 116.99863 * 270.00074 * 13 3 2 15 15 O 1.21408 * 119.99638 * 359.97438 * 14 13 3 16 16 C 1.48231 * 120.00037 * 179.97438 * 14 13 3 17 17 C 1.39711 * 119.99962 * 179.71699 * 16 14 13 18 18 N 1.31797 * 119.99917 * 179.75652 * 17 16 14 19 19 C 1.32975 * 119.99378 * 0.54531 * 18 17 16 20 20 C 1.48231 * 119.99497 * 179.70909 * 19 18 17 21 21 O 1.21408 * 119.99879 * 179.97438 * 20 19 18 22 22 O 1.34667 * 119.99886 * 359.97438 * 20 19 18 23 23 C 1.39663 * 120.00534 * 359.69263 * 19 18 17 24 24 N 1.31830 * 120.00211 * 0.03626 * 23 19 18 25 25 H 1.08991 * 109.47245 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47229 * 59.99802 * 1 2 3 27 27 H 1.09007 * 109.46710 * 300.00032 * 1 2 3 28 28 H 1.09005 * 109.46901 * 119.99772 * 2 1 3 29 29 H 1.08995 * 109.46803 * 239.99620 * 2 1 3 30 30 H 0.96998 * 120.00398 * 179.97438 * 8 7 5 31 31 H 1.08005 * 120.00030 * 0.02562 * 17 16 14 32 32 H 0.96699 * 116.99080 * 180.02562 * 22 20 19 33 33 H 1.07998 * 120.00288 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6030 1.9824 -0.8400 5 6 3.5416 1.4443 -0.1282 6 1 4.1522 1.8154 0.6817 7 6 4.1358 0.9723 -1.2793 8 7 3.3951 0.6501 -2.3172 9 14 5.9930 0.7903 -1.3647 10 1 6.3887 -0.5214 -0.7922 11 1 6.4330 0.8653 -2.7811 12 1 6.6336 1.8825 -0.5889 13 8 1.6596 2.0904 1.2424 14 6 0.4727 2.7262 1.2619 15 8 -0.2251 2.7396 0.2684 16 6 0.0181 3.4098 2.4961 17 6 -1.2106 4.0745 2.5145 18 7 -1.6169 4.6782 3.6133 19 6 -0.8523 4.6638 4.7012 20 6 -1.3064 5.3483 5.9352 21 8 -0.6086 5.3348 6.9286 22 8 -2.4929 5.9850 5.9542 23 6 0.3782 4.0036 4.6814 24 7 0.7823 3.3952 3.5839 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 0.5139 0.8901 28 1 1.8934 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 3.8132 0.3184 -3.1272 31 1 -1.8295 4.0899 1.6295 32 1 -2.7458 6.4170 6.7815 33 1 0.9990 3.9916 5.5651 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589464457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:43 Heat of formation + Delta-G solvation = -147.280610 kcal Electronic energy + Delta-G solvation = -21138.357704 eV Core-core repulsion = 17549.949217 eV Total energy + Delta-G solvation = -3588.408487 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.83832 -41.42093 -40.79374 -37.80895 -37.31010 -36.02835 -35.39963 -33.57261 -33.20425 -29.47832 -28.15561 -26.07328 -25.32743 -24.08130 -22.84336 -21.67481 -20.06039 -19.48120 -18.83039 -18.71143 -18.14653 -17.81410 -17.46589 -17.01410 -16.56385 -16.23946 -15.72878 -15.61578 -14.89105 -14.77164 -14.29141 -14.02798 -13.45485 -13.31603 -13.18804 -13.13754 -12.85556 -12.81566 -12.65524 -12.55009 -12.25733 -12.16279 -11.95711 -11.74230 -11.43614 -10.97082 -10.87998 -10.64761 -10.55407 -8.29931 -6.43455 -1.52393 -0.38436 0.76510 1.35366 1.43768 1.44154 1.45508 1.54528 1.66374 2.35705 2.37375 2.59031 2.75661 2.91521 3.01813 3.51676 3.75061 4.05185 4.26630 4.35187 4.37000 4.49725 4.75565 4.81096 5.06301 5.17041 5.24730 5.28363 5.49347 5.58853 5.60618 5.80235 6.03188 6.09076 6.55380 6.80665 6.81104 7.26130 8.78981 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.029805 B = 0.003816 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.217380 B = 7335.876320 C = 7923.404776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C 0.221 3.779 4 H 0.022 0.978 5 C -0.552 4.552 6 H 0.063 0.937 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 0.976 3.024 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.268 1.268 13 O -0.339 6.339 14 C 0.508 3.492 15 O -0.506 6.506 16 C 0.075 3.925 17 C 0.120 3.880 18 N -0.387 5.387 19 C 0.063 3.937 20 C 0.562 3.438 21 O -0.508 6.508 22 O -0.485 6.485 23 C 0.120 3.880 24 N -0.407 5.407 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.036 0.964 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.271 0.729 31 H 0.213 0.787 32 H 0.441 0.559 33 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.323 7.566 14.396 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.162 4.162 3 C 0.168 3.832 4 H 0.040 0.960 5 C -0.589 4.589 6 H 0.082 0.918 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.799 3.201 10 H -0.192 1.192 11 H -0.203 1.203 12 H -0.192 1.192 13 O -0.254 6.254 14 C 0.349 3.651 15 O -0.395 6.395 16 C -0.065 4.065 17 C -0.041 4.041 18 N -0.104 5.104 19 C -0.078 4.078 20 C 0.403 3.597 21 O -0.396 6.396 22 O -0.298 6.298 23 C -0.041 4.041 24 N -0.124 5.124 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.230 0.770 32 H 0.305 0.695 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -10.206 7.282 13.790 18.637 hybrid contribution 0.732 0.045 -0.072 0.737 sum -9.474 7.328 13.718 18.210 Atomic orbital electron populations 1.21744 0.95768 1.01097 1.00409 1.21800 0.94985 0.97672 1.01706 1.20575 0.94859 0.89492 0.78234 0.96046 1.21256 0.90423 1.44558 1.02709 0.91842 1.25728 1.03884 0.94158 0.93984 1.70063 1.37703 1.43407 1.03791 0.85302 0.78103 0.79168 0.77511 1.19193 1.20283 1.19243 1.86634 1.34052 1.61922 1.42782 1.20837 0.80841 0.76737 0.86646 1.90815 1.55450 1.58524 1.34729 1.21601 0.94363 0.98266 0.92304 1.24130 0.92552 0.89646 0.97761 1.68758 1.30756 1.12752 0.98138 1.21701 0.94056 0.98790 0.93299 1.19711 0.79572 0.75492 0.84954 1.90957 1.55914 1.58319 1.34383 1.84614 1.34556 1.64211 1.46445 1.24380 0.93357 0.89295 0.97114 1.68728 1.31408 1.13510 0.98783 0.91677 0.93720 0.94483 0.93131 0.90814 0.91962 0.77002 0.69495 0.76474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.46 8.57 71.98 0.62 -4.85 16 2 C -0.12 -5.96 5.53 30.60 0.17 -5.79 16 3 C 0.22 11.74 2.12 29.85 0.06 11.80 16 4 H 0.02 1.28 7.13 -2.39 -0.02 1.26 16 5 C -0.55 -31.03 8.83 25.60 0.23 -30.80 16 6 H 0.06 3.56 7.82 -2.91 -0.02 3.54 16 7 C 0.02 1.25 5.20 84.65 0.44 1.69 16 8 N -0.91 -51.50 12.01 21.45 0.26 -51.25 16 9 Si 0.98 42.60 29.54 68.60 2.03 44.62 16 10 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 O -0.34 -16.21 9.64 -55.77 -0.54 -16.74 16 14 C 0.51 20.62 6.42 70.48 0.45 21.07 16 15 O -0.51 -21.61 13.53 20.13 0.27 -21.34 16 16 C 0.07 2.36 6.76 41.99 0.28 2.65 16 17 C 0.12 2.99 10.77 85.05 0.92 3.91 16 18 N -0.39 -8.85 10.27 -183.32 -1.88 -10.73 16 19 C 0.06 1.33 6.76 41.97 0.28 1.61 16 20 C 0.56 9.64 8.33 70.48 0.59 10.23 16 21 O -0.51 -10.17 17.13 20.13 0.34 -9.82 16 22 O -0.48 -5.76 13.26 -55.76 -0.74 -6.50 16 23 C 0.12 2.69 10.77 85.04 0.92 3.61 16 24 N -0.41 -12.33 10.27 -183.33 -1.88 -14.21 16 25 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.04 1.92 7.80 -2.39 -0.02 1.90 16 27 H 0.04 1.45 6.05 -2.38 -0.01 1.44 16 28 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 29 H 0.07 3.86 6.65 -2.39 -0.02 3.84 16 30 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 31 H 0.21 4.49 7.64 -2.91 -0.02 4.47 16 32 H 0.44 0.42 9.11 -74.06 -0.67 -0.26 16 33 H 0.22 3.61 7.64 -2.91 -0.02 3.59 16 Total: -1.00 -68.47 301.47 3.32 -65.15 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 0.50 Total: 5.68 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 4.95 Total: 15.12 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -3.51 Total: -76.18 kcal Atomic # 8 Polarization: -53.74 SS G_CDS: -0.66 Total: -54.40 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -68.47 3.32 -65.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589464457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.128 kcal (2) G-P(sol) polarization free energy of solvation -68.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds