Wall clock time and date at job start Tue Mar 31 2020 01:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46988 * 2 1 4 4 C 1.36941 * 119.99563 * 84.22210 * 3 2 1 5 5 H 1.07996 * 120.00229 * 327.57891 * 4 3 2 6 6 C 1.38817 * 119.99710 * 147.58342 * 4 3 2 7 7 N 1.31614 * 120.00275 * 335.80871 * 6 4 3 8 8 Si 1.86803 * 119.99691 * 155.81220 * 6 4 3 9 9 H 1.48499 * 109.47042 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47133 * 119.99875 * 8 6 4 11 11 H 1.48510 * 109.46619 * 240.00024 * 8 6 4 12 12 C 1.46497 * 120.00198 * 264.21654 * 3 2 1 13 13 C 1.50698 * 109.47153 * 90.00552 * 12 3 2 14 14 N 1.28798 * 124.76022 * 89.71647 * 13 12 3 15 15 C 1.32511 * 117.12272 * 179.84165 * 14 13 12 16 16 C 1.48409 * 122.96124 * 180.21449 * 15 14 13 17 17 N 1.34077 * 126.67488 * 0.25098 * 16 15 14 18 18 N 1.28982 * 107.26197 * 179.97438 * 17 16 15 19 19 N 1.28729 * 108.95679 * 0.02562 * 18 17 16 20 20 H 0.96999 * 125.34114 * 179.97438 * 19 18 17 21 21 N 1.28872 * 109.32108 * 359.75202 * 19 18 17 22 22 C 1.34801 * 114.08378 * 0.44641 * 15 14 13 23 23 S 1.70917 * 124.75869 * 270.02472 * 13 12 3 24 24 H 1.08996 * 109.47545 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47059 * 300.00035 * 1 2 3 26 26 H 1.08995 * 109.47252 * 59.99245 * 1 2 3 27 27 H 1.08994 * 109.46753 * 240.00506 * 2 1 3 28 28 H 1.09001 * 109.47076 * 120.00327 * 2 1 3 29 29 H 0.97001 * 120.00186 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46861 * 210.00265 * 12 3 2 31 31 H 1.09000 * 109.47233 * 330.00127 * 12 3 2 32 32 H 1.07999 * 126.05744 * 179.73801 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1339 2.0665 1.1800 5 1 1.4438 1.8716 1.9875 6 6 3.1382 3.0117 1.3381 7 7 4.2328 2.9368 0.6112 8 14 2.9359 4.3900 2.5826 9 1 1.6250 4.2511 3.2663 10 1 4.0283 4.3154 3.5858 11 1 2.9934 5.6996 1.8846 12 6 2.3830 2.0293 -1.2622 13 6 1.1754 2.7227 -1.8381 14 7 0.8393 3.9407 -1.5883 15 6 -0.2534 4.3996 -2.1810 16 6 -0.7558 5.7829 -1.9891 17 7 -0.2035 6.7368 -1.2258 18 7 -0.9432 7.7880 -1.3319 19 7 -1.9255 7.5300 -2.1229 20 1 -2.6263 8.1538 -2.3693 21 7 -1.8292 6.3144 -2.5398 22 6 -0.8713 3.4979 -2.9698 23 16 0.0554 2.0009 -2.9086 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 4.9347 3.5971 0.7219 30 1 3.1701 2.7612 -1.0807 31 1 2.7408 1.2780 -1.9663 32 1 -1.7746 3.6637 -3.5381 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590680106.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:38 Heat of formation + Delta-G solvation = 173.332727 kcal Electronic energy + Delta-G solvation = -19449.824899 eV Core-core repulsion = 16382.657623 eV Total energy + Delta-G solvation = -3067.167276 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.080 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.53248 -40.64514 -37.81771 -35.40101 -34.53306 -33.82594 -32.08152 -30.37432 -28.44419 -26.70148 -25.55125 -25.40731 -23.33347 -22.16051 -20.87310 -20.37791 -18.98399 -18.24769 -18.17724 -17.02683 -16.77029 -15.94828 -15.69921 -15.25194 -15.14769 -14.84787 -14.54455 -14.18748 -13.46407 -13.35931 -13.15436 -12.89104 -12.66359 -12.53682 -12.50583 -12.38328 -12.25132 -12.13328 -11.99728 -11.85184 -11.48439 -10.52644 -10.41945 -10.27449 -9.53058 -8.69247 -7.88078 -5.40270 -0.44502 0.03462 0.45918 0.73762 0.79073 1.35765 1.39870 1.52305 1.53155 2.14991 2.49248 2.51787 3.12531 3.27244 3.68205 3.77411 4.15421 4.32732 4.40640 4.43625 4.46451 4.70705 4.82253 4.90573 5.09464 5.11034 5.30851 5.58106 5.58710 5.61639 5.72414 6.42056 6.92177 7.11388 7.12537 7.82785 8.27968 9.09348 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.007769 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.370149 B = 3603.390582 C = 5019.495841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.133 3.867 3 N -0.581 5.581 4 C -0.256 4.256 5 H 0.051 0.949 6 C -0.013 4.013 7 N -0.901 5.901 8 Si 0.936 3.064 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.298 1.298 12 C 0.199 3.801 13 C 0.056 3.944 14 N -0.487 5.487 15 C 0.108 3.892 16 C 0.240 3.760 17 N -0.294 5.294 18 N -0.060 5.060 19 N -0.193 5.193 20 H 0.497 0.503 21 N -0.275 5.275 22 C -0.220 4.220 23 S 0.190 5.810 24 H 0.075 0.925 25 H 0.026 0.974 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.253 0.747 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.742 0.916 -11.242 17.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.008 3.992 3 N -0.301 5.301 4 C -0.386 4.386 5 H 0.068 0.932 6 C -0.212 4.212 7 N -0.545 5.545 8 Si 0.766 3.234 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.225 1.225 12 C 0.069 3.931 13 C -0.226 4.226 14 N -0.202 5.202 15 C -0.027 4.027 16 C -0.042 4.042 17 N -0.166 5.166 18 N -0.055 5.055 19 N -0.045 5.045 20 H 0.357 0.643 21 N -0.129 5.129 22 C -0.364 4.364 23 S 0.446 5.554 24 H 0.093 0.907 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -13.292 0.885 -11.036 17.299 hybrid contribution -0.642 2.028 0.813 2.277 sum -13.934 2.913 -10.222 17.525 Atomic orbital electron populations 1.22307 0.98003 1.01338 1.00676 1.21123 0.93257 0.84555 1.00222 1.43953 1.75309 1.09519 1.01314 1.19006 1.08232 1.18259 0.93151 0.93166 1.25328 0.94189 1.01983 0.99674 1.69965 1.05480 1.35342 1.43742 0.85725 0.77307 0.81057 0.79348 1.20467 1.21056 1.22547 1.19804 0.90498 0.96674 0.86164 1.28994 1.03971 0.91843 0.97792 1.65977 1.15630 1.14835 1.23719 1.16986 0.94468 0.90351 1.00919 1.22632 0.90914 0.95132 0.95556 1.76346 1.22953 0.97068 1.20225 1.78900 0.96616 1.20151 1.09880 1.47766 1.20725 1.08584 1.27391 0.64263 1.74792 1.19606 0.95721 1.22778 1.27280 1.07124 0.95636 1.06382 1.83378 1.17531 1.13131 1.41402 0.90661 0.95513 0.92933 0.91756 0.93931 0.93736 0.88716 0.90586 0.77075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.44 10.20 71.98 0.73 -4.71 16 2 C 0.13 5.11 6.44 86.38 0.56 5.66 16 3 N -0.58 -27.81 2.46 -706.35 -1.73 -29.54 16 4 C -0.26 -14.17 9.49 84.03 0.80 -13.37 16 5 H 0.05 2.85 7.94 -2.91 -0.02 2.83 16 6 C -0.01 -0.75 4.94 84.86 0.42 -0.33 16 7 N -0.90 -52.71 11.28 21.65 0.24 -52.47 16 8 Si 0.94 48.57 29.62 68.60 2.03 50.61 16 9 H -0.28 -14.36 7.11 99.48 0.71 -13.66 16 10 H -0.28 -14.15 7.11 99.48 0.71 -13.45 16 11 H -0.30 -16.28 7.11 99.48 0.71 -15.57 16 12 C 0.20 9.09 5.91 85.63 0.51 9.59 16 13 C 0.06 2.31 6.87 88.55 0.61 2.92 16 14 N -0.49 -22.20 10.55 -180.54 -1.90 -24.10 16 15 C 0.11 4.08 6.72 40.96 0.28 4.35 16 16 C 0.24 8.65 8.15 137.35 1.12 9.77 16 17 N -0.29 -11.76 12.54 -52.19 -0.65 -12.42 16 18 N -0.06 -1.84 13.47 37.02 0.50 -1.34 16 19 N -0.19 -4.02 7.90 37.02 0.29 -3.73 16 20 H 0.50 4.14 8.96 -347.53 -3.12 1.02 16 21 N -0.27 -7.29 12.30 -52.14 -0.64 -7.93 16 22 C -0.22 -6.34 11.12 67.03 0.75 -5.60 16 23 S 0.19 5.46 21.20 -56.49 -1.20 4.26 16 24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.05 1.68 5.94 -2.39 -0.01 1.67 16 27 H 0.06 2.13 7.83 -2.39 -0.02 2.11 16 28 H 0.04 1.69 8.09 -2.39 -0.02 1.67 16 29 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.10 5.18 5.25 -2.39 -0.01 5.17 16 31 H 0.08 2.99 7.86 -2.39 -0.02 2.97 16 32 H 0.21 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -73.39 296.98 0.76 -72.63 By element: Atomic # 1 Polarization: -2.34 SS G_CDS: -1.93 Total: -4.27 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 5.76 Total: 8.30 kcal Atomic # 7 Polarization: -127.62 SS G_CDS: -3.90 Total: -131.52 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.61 kcal Atomic # 16 Polarization: 5.46 SS G_CDS: -1.20 Total: 4.26 kcal Total: -73.39 0.76 -72.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590680106.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.959 kcal (2) G-P(sol) polarization free energy of solvation -73.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds