Wall clock time and date at job start Tue Mar 31 2020 01:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29754 * 121.50146 * 2 1 4 4 S 1.69490 * 107.81828 * 180.22571 * 3 2 1 5 5 C 1.72023 * 95.98398 * 359.76346 * 4 3 2 6 6 N 1.38809 * 127.33142 * 180.02562 * 5 4 3 7 7 C 1.46501 * 120.00080 * 359.95396 * 6 5 4 8 8 H 1.09002 * 109.46857 * 35.00133 * 7 6 5 9 9 C 1.53002 * 109.47322 * 275.00247 * 7 6 5 10 10 C 1.50694 * 109.47351 * 154.99995 * 7 6 5 11 11 H 1.08001 * 119.99765 * 5.46312 * 10 7 6 12 12 C 1.37878 * 120.00162 * 185.46095 * 10 7 6 13 13 N 1.31512 * 120.00003 * 9.56232 * 12 10 7 14 14 Si 1.86806 * 119.99966 * 189.56257 * 12 10 7 15 15 H 1.48495 * 109.47332 * 84.99547 * 14 12 10 16 16 H 1.48501 * 109.46913 * 204.99544 * 14 12 10 17 17 H 1.48500 * 109.47123 * 324.99390 * 14 12 10 18 18 C 1.38157 * 105.33739 * 359.97438 * 5 4 3 19 19 C 1.48325 * 123.07011 * 179.97438 * 18 5 4 20 20 N 1.33725 * 126.31504 * 359.97438 * 19 18 5 21 21 N 1.28556 * 109.84773 * 180.02562 * 20 19 18 22 22 N 1.28919 * 109.73932 * 359.97438 * 21 20 19 23 23 H 0.96999 * 126.43412 * 179.97438 * 22 21 20 24 24 N 1.32041 * 126.31722 * 180.02562 * 19 18 5 25 25 H 1.09002 * 109.47375 * 270.20872 * 1 2 3 26 26 H 1.09003 * 109.47697 * 30.20745 * 1 2 3 27 27 H 1.09007 * 109.47105 * 150.20901 * 1 2 3 28 28 H 0.96997 * 120.00413 * 179.97438 * 6 5 4 29 29 H 1.08996 * 109.47069 * 303.66851 * 9 7 6 30 30 H 1.09000 * 109.46595 * 63.66762 * 9 7 6 31 31 H 1.08997 * 109.46767 * 183.66037 * 9 7 6 32 32 H 0.97003 * 119.99937 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1850 1.1063 0.0000 4 16 3.8317 0.7054 -0.0064 5 6 3.6013 -0.9993 -0.0020 6 7 4.5823 -1.9814 -0.0039 7 6 5.9976 -1.6030 -0.0112 8 1 6.1337 -0.6944 0.5754 9 6 6.4514 -1.3534 -1.4509 10 6 6.8182 -2.7156 0.5885 11 1 6.3468 -3.6490 0.8586 12 6 8.1707 -2.5420 0.7922 13 7 8.7109 -1.3524 0.6424 14 14 9.2359 -3.9967 1.2811 15 1 9.6584 -4.7326 0.0625 16 1 10.4367 -3.5093 2.0063 17 1 8.4594 -4.9044 2.1633 18 6 2.2320 -1.1830 0.0049 19 6 1.5951 -2.5225 0.0099 20 7 2.2281 -3.7004 0.0080 21 7 1.3696 -4.6573 0.0132 22 7 0.1756 -4.1710 0.0190 23 1 -0.6522 -4.6765 0.0234 24 7 0.2984 -2.7718 0.0160 25 1 -0.3634 0.0037 1.0277 26 1 -0.3634 0.8881 -0.5170 27 1 -0.3634 -0.8919 -0.5106 28 1 4.3309 -2.9182 -0.0006 29 1 6.2549 -2.2407 -2.0527 30 1 5.9032 -0.5062 -1.8628 31 1 7.5193 -1.1355 -1.4625 32 1 9.6624 -1.2302 0.7861 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592482341.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:43 Heat of formation + Delta-G solvation = 153.307414 kcal Electronic energy + Delta-G solvation = -19284.991881 eV Core-core repulsion = 16216.956243 eV Total energy + Delta-G solvation = -3068.035639 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.080 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.95066 -38.78126 -36.42477 -33.62072 -32.89132 -32.69829 -30.46864 -29.02623 -27.95760 -25.44822 -24.39538 -23.53299 -21.73564 -20.88917 -19.40767 -18.61179 -17.40301 -16.81314 -16.33974 -15.53963 -15.09414 -14.46458 -14.29648 -14.01631 -13.76932 -13.01498 -12.70722 -12.62339 -12.33858 -12.04869 -11.75172 -11.43376 -11.16269 -11.03744 -10.97223 -10.87357 -10.71650 -10.62383 -10.42089 -10.24094 -10.02660 -9.89439 -9.33220 -8.63497 -8.08821 -7.13021 -6.31862 -4.37907 1.00485 1.50571 1.63906 2.11515 2.27157 2.47657 3.19693 3.26503 3.28734 3.30000 3.90207 4.11009 4.28850 4.48309 5.03241 5.14573 5.52291 5.59416 5.74877 5.83643 5.91715 5.99487 6.36701 6.41105 6.63621 6.67018 6.68116 6.95086 7.18535 7.43207 7.49082 7.73668 7.82485 8.22457 8.36701 8.66743 9.28507 10.76611 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.018484 B = 0.005943 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.450911 B = 4710.281765 C = 5991.998783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.199 3.801 3 N -0.516 5.516 4 S 0.251 5.749 5 C 0.194 3.806 6 N -0.628 5.628 7 C 0.250 3.750 8 H 0.058 0.942 9 C -0.150 4.150 10 C -0.540 4.540 11 H 0.068 0.932 12 C 0.073 3.927 13 N -0.880 5.880 14 Si 0.903 3.097 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.272 1.272 18 C -0.280 4.280 19 C 0.317 3.683 20 N -0.315 5.315 21 N 0.010 4.990 22 N -0.310 5.310 23 H 0.464 0.536 24 N -0.316 5.316 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.416 0.584 29 H 0.038 0.962 30 H 0.023 0.977 31 H 0.083 0.917 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.864 -1.363 -1.985 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.021 3.979 3 N -0.338 5.338 4 S 0.394 5.606 5 C -0.056 4.056 6 N -0.251 5.251 7 C 0.148 3.852 8 H 0.076 0.924 9 C -0.209 4.209 10 C -0.578 4.578 11 H 0.086 0.914 12 C -0.132 4.132 13 N -0.517 5.517 14 Si 0.730 3.270 15 H -0.202 1.202 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.306 4.306 19 C 0.036 3.964 20 N -0.194 5.194 21 N 0.013 4.987 22 N -0.156 5.156 23 H 0.318 0.682 24 N -0.161 5.161 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.257 0.743 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.102 0.898 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.599 0.172 -1.970 12.753 hybrid contribution -0.792 -2.746 0.290 2.873 sum -13.391 -2.574 -1.680 13.739 Atomic orbital electron populations 1.20710 0.87060 1.03809 1.03380 1.20601 0.97967 0.86951 0.92393 1.76482 0.99359 1.24452 1.33525 1.84417 1.10411 0.91485 1.74335 1.23487 0.91646 0.98977 0.91516 1.45710 1.05433 1.06947 1.66974 1.19320 0.73083 0.98393 0.94380 0.92437 1.22142 1.03136 0.98377 0.97222 1.21033 0.93180 0.99957 1.43601 0.91422 1.24849 0.97703 0.96134 0.94473 1.69939 1.12893 1.21048 1.47784 0.86428 0.79656 0.82175 0.78776 1.20201 1.21011 1.19693 1.16696 0.89503 0.88590 1.35830 1.22668 0.86778 0.92987 0.93942 1.75285 1.25512 0.95922 1.22704 1.78258 0.88794 1.22670 1.08954 1.50982 1.08772 1.04505 1.51379 0.68235 1.78873 1.17557 0.90259 1.29368 0.90332 0.90829 0.88908 0.74316 0.94275 0.95790 0.89848 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 9.61 36.00 0.35 -0.78 16 2 C 0.20 3.32 6.74 -83.28 -0.56 2.76 16 3 N -0.52 -9.21 11.99 32.51 0.39 -8.83 16 4 S 0.25 4.60 22.60 -107.50 -2.43 2.17 16 5 C 0.19 3.75 7.28 -14.42 -0.10 3.65 16 6 N -0.63 -13.09 5.22 -54.48 -0.28 -13.37 16 7 C 0.25 5.79 2.46 -69.08 -0.17 5.62 16 8 H 0.06 1.44 7.38 -51.93 -0.38 1.06 16 9 C -0.15 -3.29 9.37 37.16 0.35 -2.94 16 10 C -0.54 -13.70 8.66 -34.44 -0.30 -14.00 16 11 H 0.07 1.71 7.74 -52.49 -0.41 1.31 16 12 C 0.07 1.87 5.17 -17.82 -0.09 1.78 16 13 N -0.88 -23.25 12.16 55.43 0.67 -22.57 16 14 Si 0.90 20.02 29.55 -169.99 -5.02 15.00 16 15 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 18 C -0.28 -5.04 5.89 -105.59 -0.62 -5.67 16 19 C 0.32 5.38 7.91 -156.42 -1.24 4.14 16 20 N -0.32 -5.50 10.32 32.11 0.33 -5.17 16 21 N 0.01 0.14 13.42 60.35 0.81 0.95 16 22 N -0.31 -3.51 8.44 60.35 0.51 -3.00 16 23 H 0.46 2.86 8.96 -331.92 -2.98 -0.11 16 24 N -0.32 -4.44 10.02 32.12 0.32 -4.12 16 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.09 1.16 5.68 -51.93 -0.29 0.86 16 28 H 0.42 8.65 6.53 -40.82 -0.27 8.38 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.97 6.83 -51.93 -0.35 1.62 16 32 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 292.11 15.07 4.40 4.40 Total: -1.00 -28.08 292.11 -8.19 -36.27 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.51 Total: 3.71 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -2.39 Total: -5.44 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 2.75 Total: -56.11 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 4.60 SS G_CDS: -2.43 Total: 2.17 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.08 -8.19 -36.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592482341.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.581 kcal (2) G-P(sol) polarization free energy of solvation -28.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds