Wall clock time and date at job start Tue Mar 31 2020 01:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29754 * 121.50146 * 2 1 4 4 S 1.69490 * 107.81828 * 180.22571 * 3 2 1 5 5 C 1.72023 * 95.98398 * 359.76346 * 4 3 2 6 6 N 1.38809 * 127.33142 * 180.02562 * 5 4 3 7 7 C 1.46501 * 120.00080 * 359.95396 * 6 5 4 8 8 H 1.09002 * 109.46857 * 35.00133 * 7 6 5 9 9 C 1.53002 * 109.47322 * 275.00247 * 7 6 5 10 10 C 1.50694 * 109.47351 * 154.99995 * 7 6 5 11 11 H 1.08001 * 119.99765 * 5.46312 * 10 7 6 12 12 C 1.37878 * 120.00162 * 185.46095 * 10 7 6 13 13 N 1.31512 * 120.00003 * 9.56232 * 12 10 7 14 14 Si 1.86806 * 119.99966 * 189.56257 * 12 10 7 15 15 H 1.48495 * 109.47332 * 84.99547 * 14 12 10 16 16 H 1.48501 * 109.46913 * 204.99544 * 14 12 10 17 17 H 1.48500 * 109.47123 * 324.99390 * 14 12 10 18 18 C 1.38157 * 105.33739 * 359.97438 * 5 4 3 19 19 C 1.48325 * 123.07011 * 179.97438 * 18 5 4 20 20 N 1.33725 * 126.31504 * 359.97438 * 19 18 5 21 21 N 1.28556 * 109.84773 * 180.02562 * 20 19 18 22 22 N 1.28919 * 109.73932 * 359.97438 * 21 20 19 23 23 H 0.96999 * 126.43412 * 179.97438 * 22 21 20 24 24 N 1.32041 * 126.31722 * 180.02562 * 19 18 5 25 25 H 1.09002 * 109.47375 * 270.20872 * 1 2 3 26 26 H 1.09003 * 109.47697 * 30.20745 * 1 2 3 27 27 H 1.09007 * 109.47105 * 150.20901 * 1 2 3 28 28 H 0.96997 * 120.00413 * 179.97438 * 6 5 4 29 29 H 1.08996 * 109.47069 * 303.66851 * 9 7 6 30 30 H 1.09000 * 109.46595 * 63.66762 * 9 7 6 31 31 H 1.08997 * 109.46767 * 183.66037 * 9 7 6 32 32 H 0.97003 * 119.99937 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1850 1.1063 0.0000 4 16 3.8317 0.7054 -0.0064 5 6 3.6013 -0.9993 -0.0020 6 7 4.5823 -1.9814 -0.0039 7 6 5.9976 -1.6030 -0.0112 8 1 6.1337 -0.6944 0.5754 9 6 6.4514 -1.3534 -1.4509 10 6 6.8182 -2.7156 0.5885 11 1 6.3468 -3.6490 0.8586 12 6 8.1707 -2.5420 0.7922 13 7 8.7109 -1.3524 0.6424 14 14 9.2359 -3.9967 1.2811 15 1 9.6584 -4.7326 0.0625 16 1 10.4367 -3.5093 2.0063 17 1 8.4594 -4.9044 2.1633 18 6 2.2320 -1.1830 0.0049 19 6 1.5951 -2.5225 0.0099 20 7 2.2281 -3.7004 0.0080 21 7 1.3696 -4.6573 0.0132 22 7 0.1756 -4.1710 0.0190 23 1 -0.6522 -4.6765 0.0234 24 7 0.2984 -2.7718 0.0160 25 1 -0.3634 0.0037 1.0277 26 1 -0.3634 0.8881 -0.5170 27 1 -0.3634 -0.8919 -0.5106 28 1 4.3309 -2.9182 -0.0006 29 1 6.2549 -2.2407 -2.0527 30 1 5.9032 -0.5062 -1.8628 31 1 7.5193 -1.1355 -1.4625 32 1 9.6624 -1.2302 0.7861 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592482341.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:42 Heat of formation + Delta-G solvation = 134.393395 kcal Electronic energy + Delta-G solvation = -19285.812055 eV Core-core repulsion = 16216.956243 eV Total energy + Delta-G solvation = -3068.855812 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.080 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.13566 -40.16339 -38.04739 -35.09172 -34.44268 -33.89279 -32.08252 -30.20233 -29.50493 -27.35051 -25.59090 -24.88172 -23.21411 -22.45375 -20.72156 -19.89183 -18.88379 -18.47674 -17.51814 -17.11998 -16.85504 -15.83918 -15.64913 -15.52131 -15.14077 -14.61049 -14.34699 -13.99230 -13.59385 -13.48883 -13.05052 -12.92679 -12.83550 -12.69228 -12.49647 -12.30484 -12.25339 -12.14967 -11.79243 -11.59965 -11.55846 -11.35150 -11.17091 -10.56967 -9.47562 -8.65256 -8.25518 -6.37713 -0.22829 0.13262 0.20095 0.83499 0.99877 1.38752 1.44213 1.45985 1.54597 1.96260 2.28075 2.51248 2.87466 3.07374 3.26485 3.82342 4.27197 4.44380 4.54103 4.58465 4.61814 4.81119 4.84929 4.85742 4.89536 5.19118 5.32964 5.55749 5.62302 5.80499 5.88740 5.90408 6.09445 6.54494 6.76669 7.16187 7.31789 8.82396 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.018484 B = 0.005943 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.450911 B = 4710.281765 C = 5991.998783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.198 3.802 3 N -0.520 5.520 4 S 0.238 5.762 5 C 0.176 3.824 6 N -0.639 5.639 7 C 0.259 3.741 8 H 0.034 0.966 9 C -0.138 4.138 10 C -0.555 4.555 11 H 0.062 0.938 12 C 0.031 3.969 13 N -0.906 5.906 14 Si 0.961 3.039 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.271 1.271 18 C -0.276 4.276 19 C 0.299 3.701 20 N -0.348 5.348 21 N 0.007 4.993 22 N -0.273 5.273 23 H 0.487 0.513 24 N -0.299 5.299 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.416 0.584 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.063 0.937 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.868 -2.215 -2.017 16.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.020 3.980 3 N -0.342 5.342 4 S 0.382 5.618 5 C -0.071 4.071 6 N -0.263 5.263 7 C 0.156 3.844 8 H 0.052 0.948 9 C -0.198 4.198 10 C -0.593 4.593 11 H 0.081 0.919 12 C -0.171 4.171 13 N -0.543 5.543 14 Si 0.786 3.214 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.196 1.196 18 C -0.301 4.301 19 C 0.017 3.983 20 N -0.226 5.226 21 N 0.011 4.989 22 N -0.124 5.124 23 H 0.346 0.654 24 N -0.144 5.144 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.117 0.883 28 H 0.256 0.744 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.645 -0.684 -2.006 14.797 hybrid contribution -0.428 -2.508 0.310 2.563 sum -15.072 -3.192 -1.697 15.499 Atomic orbital electron populations 1.20828 0.84051 1.04916 1.04673 1.21126 0.99751 0.86048 0.91095 1.76559 0.98695 1.24869 1.34084 1.84417 1.11579 0.91456 1.74358 1.23636 0.92141 0.98912 0.92423 1.45322 1.04637 1.07068 1.69322 1.18984 0.74407 0.96706 0.94262 0.94804 1.21980 1.01867 0.99024 0.96890 1.21311 0.93862 1.00360 1.43764 0.91946 1.25556 0.98749 0.98256 0.94523 1.70030 1.13148 1.22531 1.48611 0.85519 0.78013 0.79333 0.78511 1.19629 1.20718 1.19616 1.16952 0.89065 0.89799 1.34332 1.22550 0.87576 0.92627 0.95548 1.75273 1.26819 0.96424 1.24109 1.78216 0.89351 1.22047 1.09275 1.51010 1.09231 1.03834 1.48360 0.65369 1.78816 1.16092 0.91402 1.28086 0.88759 0.89207 0.88260 0.74418 0.93963 0.94398 0.91857 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 9.61 71.24 0.68 -1.20 16 2 C 0.20 6.27 6.74 42.99 0.29 6.56 16 3 N -0.52 -18.00 11.99 -51.06 -0.61 -18.62 16 4 S 0.24 8.81 22.60 -56.49 -1.28 7.54 16 5 C 0.18 6.86 7.28 83.57 0.61 7.47 16 6 N -0.64 -27.11 5.22 -326.28 -1.70 -28.81 16 7 C 0.26 12.31 2.46 44.24 0.11 12.41 16 8 H 0.03 1.77 7.38 -2.39 -0.02 1.75 16 9 C -0.14 -6.20 9.37 71.98 0.67 -5.53 16 10 C -0.56 -28.67 8.66 25.60 0.22 -28.45 16 11 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 12 C 0.03 1.61 5.17 84.66 0.44 2.05 16 13 N -0.91 -48.65 12.16 21.45 0.26 -48.39 16 14 Si 0.96 41.20 29.55 68.60 2.03 43.22 16 15 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 16 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 18 C -0.28 -9.67 5.89 -20.49 -0.12 -9.79 16 19 C 0.30 9.67 7.91 137.36 1.09 10.75 16 20 N -0.35 -11.79 10.32 -52.32 -0.54 -12.33 16 21 N 0.01 0.19 13.42 37.02 0.50 0.69 16 22 N -0.27 -5.33 8.44 37.02 0.31 -5.02 16 23 H 0.49 4.17 8.96 -340.35 -3.05 1.12 16 24 N -0.30 -7.54 10.02 -52.28 -0.52 -8.07 16 25 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 26 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 27 H 0.10 2.15 5.68 -2.38 -0.01 2.13 16 28 H 0.42 17.56 6.53 -92.71 -0.61 16.95 16 29 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 3.07 6.83 -2.39 -0.02 3.05 16 32 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -59.93 292.11 -0.02 -59.95 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -2.45 Total: 15.55 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 3.99 Total: -5.72 kcal Atomic # 7 Polarization: -118.23 SS G_CDS: -2.31 Total: -120.54 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 16 Polarization: 8.81 SS G_CDS: -1.28 Total: 7.54 kcal Total: -59.93 -0.02 -59.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592482341.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.345 kcal (2) G-P(sol) polarization free energy of solvation -59.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds