Wall clock time and date at job start Tue Mar 31 2020 01:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99833 * 2 1 4 4 H 1.48495 * 109.47068 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47259 * 300.00009 * 3 2 1 6 6 H 1.48504 * 109.47094 * 59.99966 * 3 2 1 7 7 C 1.37882 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99887 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00015 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47206 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99832 * 180.02562 * 10 9 7 12 12 O 1.21643 * 120.00454 * 5.10329 * 11 10 9 13 13 C 1.47086 * 119.99585 * 185.10414 * 11 10 9 14 14 C 1.39339 * 120.58328 * 174.14463 * 13 11 10 15 15 C 1.39473 * 118.95575 * 179.97438 * 14 13 11 16 16 C 1.35760 * 120.13058 * 0.02562 * 15 14 13 17 17 N 1.35425 * 121.23233 * 0.27843 * 16 15 14 18 18 C 1.46495 * 119.47137 * 179.70052 * 17 16 15 19 19 C 1.50696 * 109.47500 * 89.99771 * 18 17 16 20 20 O 1.20833 * 119.99997 * 359.97438 * 19 18 17 21 21 O 1.34228 * 120.00597 * 180.02562 * 19 18 17 22 22 C 1.34652 * 121.05613 * 359.43018 * 17 16 15 23 23 O 1.21886 * 120.10453 * 180.28254 * 22 17 16 24 24 H 0.96991 * 120.00434 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47129 * 59.99740 * 9 7 2 26 26 H 1.09001 * 109.47474 * 300.00327 * 9 7 2 27 27 H 0.96999 * 119.99762 * 0.02562 * 10 9 7 28 28 H 1.07996 * 120.52287 * 359.96227 * 14 13 11 29 29 H 1.08000 * 119.93616 * 180.02562 * 15 14 13 30 30 H 1.08003 * 119.38205 * 179.97438 * 16 15 14 31 31 H 1.09000 * 109.47107 * 209.99651 * 18 17 16 32 32 H 1.09000 * 109.47014 * 329.99540 * 18 17 16 33 33 H 0.96703 * 117.00514 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2032 -3.6127 -0.0018 11 6 1.7539 -4.8833 -0.0025 12 8 0.5618 -5.1070 -0.0959 13 6 2.7050 -5.9997 0.1096 14 6 2.2485 -7.3104 0.2323 15 6 3.1803 -8.3431 0.3357 16 6 4.5093 -8.0662 0.3168 17 7 4.9600 -6.7942 0.2040 18 6 6.4025 -6.5389 0.1942 19 6 6.9108 -6.5817 -1.2238 20 8 6.1465 -6.8032 -2.1331 21 8 8.2126 -6.3747 -1.4768 22 6 4.1036 -5.7608 0.0952 23 8 4.5284 -4.6233 -0.0106 24 1 -0.4850 0.8399 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5572 0.8896 27 1 3.1568 -3.4354 -0.0021 28 1 1.1899 -7.5234 0.2472 29 1 2.8440 -9.3649 0.4310 30 1 5.2202 -8.8752 0.3981 31 1 6.6004 -5.5559 0.6216 32 1 6.9104 -7.3010 0.7854 33 1 8.4914 -6.4116 -2.4020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594609760.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:51 Heat of formation + Delta-G solvation = -151.203492 kcal Electronic energy + Delta-G solvation = -21427.605283 eV Core-core repulsion = 17839.026687 eV Total energy + Delta-G solvation = -3588.578596 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.84881 -41.13936 -40.10157 -38.36017 -37.23066 -36.11405 -35.55504 -34.28000 -31.40166 -30.02297 -29.35059 -26.19146 -24.60606 -24.25672 -22.67577 -21.74395 -19.59368 -19.35783 -18.67707 -18.37768 -17.94908 -17.81208 -16.97862 -16.84302 -16.67474 -16.47385 -16.03299 -15.73220 -15.44033 -14.87209 -14.27530 -14.13369 -13.94600 -13.69526 -13.53075 -13.21995 -13.18437 -12.91411 -12.76874 -12.64205 -12.27988 -11.99269 -11.56372 -11.27510 -11.16583 -10.93876 -10.84290 -9.83868 -9.14182 -8.33088 -6.50195 -0.60551 0.75138 1.03220 1.15145 1.36927 1.40215 1.54496 1.70730 2.10925 2.32076 2.69769 2.75820 2.99935 3.42502 3.66118 3.88563 3.94629 4.04010 4.17088 4.21962 4.25889 4.76697 4.91334 4.99914 5.17332 5.23309 5.43017 5.47739 5.51108 5.74216 5.76820 5.81682 6.58300 6.66446 6.83936 6.98494 7.18969 7.50184 8.79972 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.018478 B = 0.004764 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.953044 B = 5875.409443 C = 7124.580025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.990 3.010 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.560 4.560 8 H 0.068 0.932 9 C 0.264 3.736 10 N -0.706 5.706 11 C 0.547 3.453 12 O -0.610 6.610 13 C -0.323 4.323 14 C 0.077 3.923 15 C -0.232 4.232 16 C 0.188 3.812 17 N -0.479 5.479 18 C 0.094 3.906 19 C 0.471 3.529 20 O -0.550 6.550 21 O -0.501 6.501 22 C 0.527 3.473 23 O -0.577 6.577 24 H 0.272 0.728 25 H -0.014 1.014 26 H -0.009 1.009 27 H 0.411 0.589 28 H 0.147 0.853 29 H 0.206 0.794 30 H 0.240 0.760 31 H 0.141 0.859 32 H 0.209 0.791 33 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.628 -23.471 2.776 31.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.194 4.194 3 Si 0.812 3.188 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.597 4.597 8 H 0.086 0.914 9 C 0.141 3.859 10 N -0.363 5.363 11 C 0.337 3.663 12 O -0.496 6.496 13 C -0.329 4.329 14 C 0.053 3.947 15 C -0.253 4.253 16 C 0.060 3.940 17 N -0.187 5.187 18 C -0.028 4.028 19 C 0.313 3.687 20 O -0.440 6.440 21 O -0.314 6.314 22 C 0.331 3.669 23 O -0.462 6.462 24 H 0.080 0.920 25 H 0.004 0.996 26 H 0.009 0.991 27 H 0.256 0.744 28 H 0.165 0.835 29 H 0.223 0.777 30 H 0.256 0.744 31 H 0.159 0.841 32 H 0.226 0.774 33 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 19.732 -22.757 2.812 30.251 hybrid contribution -0.015 1.358 -0.990 1.680 sum 19.717 -21.399 1.822 29.155 Atomic orbital electron populations 1.70138 1.08124 1.28682 1.49692 1.26109 0.95948 1.03851 0.93479 0.85046 0.78590 0.76844 0.78310 1.18514 1.19708 1.19383 1.21556 0.93733 0.90973 1.53488 0.91353 1.18594 0.88733 0.84553 0.94011 1.46878 1.12796 1.05479 1.71117 1.18374 0.87758 0.83792 0.76397 1.90660 1.18142 1.85728 1.55074 1.20808 0.92161 0.95922 1.24054 1.22367 1.02768 0.89821 0.79704 1.21233 0.90547 1.01599 1.11937 1.23371 0.98674 0.85522 0.86428 1.45061 1.08154 1.07796 1.57694 1.21825 0.77821 1.11412 0.91698 1.23828 0.80593 0.71475 0.92767 1.90826 1.58240 1.46489 1.48456 1.84430 1.25366 1.82902 1.38746 1.16956 0.86892 0.84807 0.78226 1.90645 1.78547 1.22086 1.54958 0.91958 0.99613 0.99071 0.74428 0.83532 0.77695 0.74390 0.84145 0.77434 0.70519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.13 13.29 21.45 0.28 -59.85 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.99 46.66 29.54 68.60 2.03 48.69 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.56 -35.59 9.28 25.60 0.24 -35.36 16 8 H 0.07 4.18 7.60 -2.91 -0.02 4.16 16 9 C 0.26 17.14 5.43 85.63 0.47 17.61 16 10 N -0.71 -39.88 5.46 -470.43 -2.57 -42.45 16 11 C 0.55 28.33 7.73 86.56 0.67 29.00 16 12 O -0.61 -35.05 16.41 -4.17 -0.07 -35.12 16 13 C -0.32 -12.07 5.92 -19.79 -0.12 -12.19 16 14 C 0.08 1.96 9.70 22.83 0.22 2.18 16 15 C -0.23 -2.68 9.99 21.99 0.22 -2.47 16 16 C 0.19 1.55 10.25 83.56 0.86 2.40 16 17 N -0.48 -8.60 2.06 -653.80 -1.35 -9.95 16 18 C 0.09 0.97 5.90 85.63 0.51 1.47 16 19 C 0.47 7.30 8.39 71.23 0.60 7.90 16 20 O -0.55 -14.07 17.19 21.94 0.38 -13.69 16 21 O -0.50 -4.80 13.42 -51.40 -0.69 -5.49 16 22 C 0.53 17.48 7.43 85.16 0.63 18.11 16 23 O -0.58 -23.74 13.27 -4.95 -0.07 -23.80 16 24 H 0.27 16.12 8.31 -92.72 -0.77 15.35 16 25 H -0.01 -1.00 8.14 -2.38 -0.02 -1.02 16 26 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H 0.41 22.29 4.93 -92.76 -0.46 21.84 16 28 H 0.15 3.75 7.71 -2.91 -0.02 3.73 16 29 H 0.21 0.38 8.06 -2.91 -0.02 0.36 16 30 H 0.24 -1.41 8.02 -2.91 -0.02 -1.43 16 31 H 0.14 1.85 7.39 -2.39 -0.02 1.83 16 32 H 0.21 -0.81 8.00 -2.39 -0.02 -0.83 16 33 H 0.43 1.33 9.10 -74.06 -0.67 0.66 16 Total: -1.00 -104.90 302.82 2.75 -102.15 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.05 Total: 10.04 kcal Atomic # 6 Polarization: 24.72 SS G_CDS: 4.75 Total: 29.47 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -3.63 Total: -112.24 kcal Atomic # 8 Polarization: -77.65 SS G_CDS: -0.45 Total: -78.10 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -104.90 2.75 -102.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609760.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.051 kcal (2) G-P(sol) polarization free energy of solvation -104.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds