Wall clock time and date at job start Tue Mar 31 2020 02:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37065 * 119.71436 * 2 1 4 4 C 1.47537 * 119.78009 * 359.97438 * 3 2 1 5 5 O 1.21638 * 120.00285 * 276.36937 * 4 3 2 6 6 N 1.34771 * 120.00149 * 96.09963 * 4 3 2 7 7 C 1.36468 * 120.00629 * 184.60736 * 6 4 3 8 8 H 1.08000 * 119.99522 * 323.25614 * 7 6 4 9 9 C 1.39310 * 120.00276 * 143.25301 * 7 6 4 10 10 N 1.31191 * 120.00105 * 156.94498 * 9 7 6 11 11 Si 1.86799 * 120.00156 * 336.94679 * 9 7 6 12 12 H 1.48501 * 109.47350 * 95.30370 * 11 9 7 13 13 H 1.48496 * 109.47171 * 215.30767 * 11 9 7 14 14 H 1.48501 * 109.46833 * 335.30389 * 11 9 7 15 15 C 1.46507 * 120.00055 * 4.60624 * 6 4 3 16 16 C 1.50701 * 109.46985 * 89.33452 * 15 6 4 17 17 O 1.20823 * 120.00169 * 0.02562 * 16 15 6 18 18 O 1.34234 * 119.99577 * 180.02562 * 16 15 6 19 19 C 1.36565 * 120.43985 * 179.70972 * 3 2 1 20 20 C 1.40211 * 119.87943 * 0.26418 * 19 3 2 21 21 C 1.36261 * 119.44003 * 0.02562 * 20 19 3 22 22 C 1.34673 * 119.70680 * 180.25955 * 2 1 3 23 23 O 1.21967 * 119.94946 * 0.02562 * 22 2 1 24 24 H 1.09004 * 109.47510 * 93.30739 * 1 2 3 25 25 H 1.08998 * 109.47685 * 213.31530 * 1 2 3 26 26 H 1.09003 * 109.46925 * 333.31367 * 1 2 3 27 27 H 0.96994 * 120.00659 * 180.02562 * 10 9 7 28 28 H 1.08999 * 109.47432 * 209.33880 * 15 6 4 29 29 H 1.09005 * 109.46679 * 329.33870 * 15 6 4 30 30 H 0.96702 * 116.99593 * 180.02562 * 18 16 15 31 31 H 1.07993 * 120.05856 * 180.29548 * 19 3 2 32 32 H 1.08004 * 120.28092 * 180.02562 * 20 19 3 33 33 H 1.08002 * 120.22472 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1444 1.1904 0.0000 4 6 1.3955 2.4616 -0.0006 5 8 0.9864 2.9261 -1.0477 6 7 1.1598 3.1054 1.1597 7 6 0.3876 4.2305 1.1713 8 1 0.4445 4.9329 0.3528 9 6 -0.4742 4.4730 2.2386 10 7 -0.8658 5.6975 2.5004 11 14 -1.0720 3.0548 3.2973 12 1 -0.2038 2.9313 4.4957 13 1 -2.4711 3.3111 3.7239 14 1 -1.0164 1.7946 2.5137 15 6 1.7326 2.5974 2.4088 16 6 3.0940 3.2076 2.6219 17 8 3.5398 3.9872 1.8136 18 8 3.8112 2.8850 3.7097 19 6 3.5099 1.2077 0.0060 20 6 4.2238 0.0009 0.0065 21 6 3.5434 -1.1797 0.0006 22 6 2.1324 -1.1697 -0.0053 23 8 1.5162 -2.2223 -0.0105 24 1 -0.3634 -0.0593 -1.0260 25 1 -0.3634 -0.8587 0.5644 26 1 -0.3633 0.9182 0.4615 27 1 -1.4655 5.8664 3.2438 28 1 1.0812 2.8625 3.2416 29 1 1.8256 1.5128 2.3512 30 1 4.6786 3.3022 3.8031 31 1 4.0390 2.1492 0.0107 32 1 5.3038 0.0070 0.0117 33 1 4.0805 -2.1167 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600899621.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:13 Heat of formation + Delta-G solvation = -94.361619 kcal Electronic energy + Delta-G solvation = -22889.743388 eV Core-core repulsion = 19303.629641 eV Total energy + Delta-G solvation = -3586.113747 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.36526 -40.02328 -38.73976 -36.54348 -35.90314 -35.12045 -34.46163 -32.49652 -30.11278 -28.36829 -27.50258 -26.00797 -23.80210 -22.49214 -21.93515 -19.99560 -17.99752 -17.63968 -17.32177 -17.22651 -16.91296 -16.23140 -16.11836 -15.67323 -15.14727 -15.08253 -14.51308 -14.11267 -13.83972 -13.06908 -12.98029 -12.92661 -12.78786 -12.50985 -12.34256 -12.12920 -11.83832 -11.60971 -11.24407 -11.16617 -10.82315 -10.32691 -10.22040 -10.07812 -10.00298 -9.49072 -9.09828 -8.30261 -7.88601 -6.74032 -4.31574 0.77939 1.88578 2.39814 2.53865 2.76689 2.92510 2.94878 3.02938 3.50374 3.65821 3.77840 3.87174 4.47899 4.72566 4.83828 4.95283 5.11949 5.24671 5.36136 5.41806 5.47352 5.54691 5.61393 5.81774 5.98083 6.13345 6.29652 6.49294 6.74183 7.06030 7.14841 7.79699 8.03264 8.09265 8.20238 8.50811 8.88079 9.18932 10.36283 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.008349 C = 0.007145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.305675 B = 3353.065185 C = 3918.088916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.481 5.481 3 C 0.149 3.851 4 C 0.503 3.497 5 O -0.522 6.522 6 N -0.424 5.424 7 C -0.326 4.326 8 H 0.117 0.883 9 C 0.067 3.933 10 N -0.835 5.835 11 Si 0.856 3.144 12 H -0.266 1.266 13 H -0.274 1.274 14 H -0.257 1.257 15 C 0.093 3.907 16 C 0.462 3.538 17 O -0.487 6.487 18 O -0.523 6.523 19 C -0.212 4.212 20 C -0.012 4.012 21 C -0.244 4.244 22 C 0.514 3.486 23 O -0.558 6.558 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.281 0.719 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.404 0.596 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.834 -8.640 3.115 12.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.194 5.194 3 C 0.037 3.963 4 C 0.289 3.711 5 O -0.401 6.401 6 N -0.145 5.145 7 C -0.452 4.452 8 H 0.134 0.866 9 C -0.142 4.142 10 N -0.469 5.469 11 Si 0.681 3.319 12 H -0.193 1.193 13 H -0.199 1.199 14 H -0.181 1.181 15 C -0.033 4.033 16 C 0.302 3.698 17 O -0.372 6.372 18 O -0.334 6.334 19 C -0.236 4.236 20 C -0.034 4.034 21 C -0.266 4.266 22 C 0.317 3.683 23 O -0.441 6.441 24 H 0.100 0.900 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.133 0.867 29 H 0.120 0.880 30 H 0.263 0.737 31 H 0.167 0.833 32 H 0.156 0.844 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.747 -8.845 2.398 11.380 hybrid contribution 0.358 -0.148 0.817 0.904 sum 7.104 -8.993 3.215 11.903 Atomic orbital electron populations 1.22300 0.76704 1.05156 1.04600 1.45615 1.09481 1.05503 1.58752 1.20937 0.93355 0.87087 0.94933 1.17647 0.84073 0.83702 0.85686 1.90780 1.52219 1.67001 1.30063 1.43126 1.42798 1.25409 1.03121 1.19053 1.18651 0.97407 1.10136 0.86582 1.25405 0.95879 0.96169 0.96764 1.69643 1.30699 1.18879 1.27648 0.87300 0.79972 0.83963 0.80644 1.19344 1.19925 1.18089 1.21616 0.90027 0.99148 0.92507 1.24135 0.87595 0.79749 0.78368 1.90723 1.70115 1.31953 1.44397 1.84554 1.34507 1.68814 1.45565 1.20909 0.91125 1.00187 1.11336 1.21371 1.00652 0.91473 0.89917 1.22199 0.92539 0.99930 1.11931 1.17267 0.89314 0.82362 0.79403 1.90905 1.70125 1.29200 1.53895 0.90033 0.88792 0.88925 0.90813 0.86650 0.87958 0.73745 0.83297 0.84434 0.83339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.88 9.97 59.85 0.60 1.48 16 2 N -0.48 -8.40 3.02 -122.86 -0.37 -8.77 16 3 C 0.15 2.70 4.50 -82.34 -0.37 2.33 16 4 C 0.50 11.03 5.17 -12.47 -0.06 10.97 16 5 O -0.52 -13.27 16.94 5.24 0.09 -13.18 16 6 N -0.42 -9.47 1.66 -117.30 -0.20 -9.66 16 7 C -0.33 -8.46 9.38 -15.09 -0.14 -8.60 16 8 H 0.12 3.45 7.85 -52.49 -0.41 3.03 16 9 C 0.07 1.69 5.29 -17.43 -0.09 1.59 16 10 N -0.84 -22.07 13.95 55.51 0.77 -21.29 16 11 Si 0.86 17.66 25.07 -169.99 -4.26 13.40 16 12 H -0.27 -5.11 6.66 56.52 0.38 -4.73 16 13 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 14 H -0.26 -5.00 6.82 56.52 0.39 -4.62 16 15 C 0.09 1.74 4.59 -5.19 -0.02 1.72 16 16 C 0.46 8.17 7.96 36.01 0.29 8.46 16 17 O -0.49 -10.02 16.78 -18.75 -0.31 -10.33 16 18 O -0.52 -6.96 13.42 -39.27 -0.53 -7.49 16 19 C -0.21 -3.27 9.19 -39.44 -0.36 -3.63 16 20 C -0.01 -0.15 10.08 -39.55 -0.40 -0.55 16 21 C -0.24 -3.36 10.00 -39.21 -0.39 -3.75 16 22 C 0.51 8.84 7.43 -15.22 -0.11 8.73 16 23 O -0.56 -10.95 16.70 4.95 0.08 -10.87 16 24 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 25 H 0.09 1.42 7.51 -51.93 -0.39 1.03 16 26 H 0.09 1.63 6.47 -51.93 -0.34 1.30 16 27 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 28 H 0.12 2.22 3.24 -51.93 -0.17 2.05 16 29 H 0.10 1.66 6.82 -51.93 -0.35 1.31 16 30 H 0.40 3.44 9.10 45.56 0.41 3.85 16 31 H 0.15 2.32 7.65 -52.49 -0.40 1.92 16 32 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.15 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 292.89 15.07 4.41 4.41 Total: -1.00 -32.37 292.89 -3.48 -35.85 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -2.09 Total: 9.19 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: -1.08 Total: 18.74 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.21 Total: -39.72 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -0.67 Total: -41.87 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -4.26 Total: 13.40 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.37 -3.48 -35.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600899621.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.512 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds