Wall clock time and date at job start Tue Mar 31 2020 02:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35522 * 125.69075 * 2 1 4 4 C 1.35787 * 108.95784 * 180.22444 * 3 2 1 5 5 C 1.39481 * 107.94328 * 359.77238 * 4 3 2 6 6 C 1.37793 * 125.69016 * 179.82524 * 2 1 3 7 7 C 1.41752 * 126.28469 * 0.03969 * 6 2 1 8 8 O 1.21730 * 119.99687 * 359.70988 * 7 6 2 9 9 C 1.48422 * 119.99918 * 179.71376 * 7 6 2 10 10 O 1.21556 * 119.99835 * 8.30377 * 9 7 6 11 11 N 1.34770 * 119.99756 * 188.02697 * 9 7 6 12 12 C 1.35971 * 119.99853 * 177.13011 * 11 9 7 13 13 H 1.07994 * 120.00125 * 337.76376 * 12 11 9 14 14 C 1.39740 * 119.99716 * 157.76305 * 12 11 9 15 15 N 1.30922 * 120.00502 * 357.01926 * 14 12 11 16 16 Si 1.86807 * 119.99467 * 177.01822 * 14 12 11 17 17 H 1.48496 * 109.46776 * 90.00378 * 16 14 12 18 18 H 1.48500 * 109.46636 * 210.00186 * 16 14 12 19 19 H 1.48500 * 109.47005 * 329.99878 * 16 14 12 20 20 C 1.46499 * 120.00297 * 357.12427 * 11 9 7 21 21 C 1.50702 * 109.47495 * 278.31528 * 20 11 9 22 22 O 1.20831 * 119.99495 * 359.97438 * 21 20 11 23 23 O 1.34229 * 119.99965 * 179.97438 * 21 20 11 24 24 H 1.09002 * 109.47347 * 270.17440 * 1 2 3 25 25 H 1.08996 * 109.47294 * 30.17352 * 1 2 3 26 26 H 1.09002 * 109.47202 * 150.17446 * 1 2 3 27 27 H 1.08002 * 125.52608 * 359.97438 * 3 2 1 28 28 H 1.08001 * 126.03407 * 179.74352 * 4 3 2 29 29 H 1.07996 * 126.47797 * 180.02562 * 5 4 3 30 30 H 0.96990 * 120.00193 * 179.97438 * 15 14 12 31 31 H 1.09010 * 109.46911 * 38.31654 * 20 11 9 32 32 H 1.08999 * 109.47367 * 158.31376 * 20 11 9 33 33 H 0.96697 * 116.99512 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2557 1.1007 0.0000 4 6 3.5560 0.7097 -0.0050 5 6 3.5855 -0.6848 -0.0030 6 6 2.2689 -1.1191 0.0034 7 6 1.8303 -2.4671 0.0067 8 8 0.6394 -2.7196 0.0121 9 6 2.8229 -3.5705 0.0038 10 8 4.0044 -3.3255 0.1506 11 7 2.4137 -4.8446 -0.1561 12 6 3.3275 -5.8495 -0.2173 13 1 4.3483 -5.6349 -0.4969 14 6 2.9458 -7.1601 0.0816 15 7 1.7234 -7.4120 0.4770 16 14 4.1798 -8.5528 -0.0830 17 1 4.8981 -8.7324 1.2043 18 1 3.4662 -9.8078 -0.4309 19 1 5.1559 -8.2254 -1.1532 20 6 0.9843 -5.1468 -0.2638 21 6 0.3772 -5.2023 1.1144 22 8 1.0679 -5.0096 2.0869 23 8 -0.9307 -5.4657 1.2616 24 1 -0.3634 0.0031 1.0277 25 1 -0.3634 0.8884 -0.5165 26 1 -0.3634 -0.8916 -0.5111 27 1 1.9079 2.1232 -0.0004 28 1 4.4159 1.3632 -0.0102 29 1 4.4672 -1.3083 -0.0055 30 1 1.4583 -8.3217 0.6841 31 1 0.4913 -4.3688 -0.8469 32 1 0.8526 -6.1095 -0.7578 33 1 -1.2744 -5.4912 2.1651 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600979405.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:41 Heat of formation + Delta-G solvation = -74.735490 kcal Electronic energy + Delta-G solvation = -22605.810186 eV Core-core repulsion = 19020.547491 eV Total energy + Delta-G solvation = -3585.262694 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.13950 -39.62734 -38.41994 -37.13346 -35.30601 -34.59018 -32.63195 -31.90285 -29.47915 -27.77201 -26.29162 -25.89774 -23.69363 -21.21589 -20.85164 -19.94296 -18.52687 -17.31555 -16.93170 -16.64725 -16.07362 -15.80800 -15.31206 -15.02611 -14.57169 -14.38666 -13.96276 -13.83055 -13.47843 -13.11998 -12.90589 -12.63678 -12.08374 -11.98863 -11.92393 -11.82913 -11.72728 -11.34246 -11.03740 -10.61516 -10.48975 -10.37917 -9.89918 -9.69539 -9.14265 -8.44357 -8.21402 -8.08230 -7.90523 -6.61452 -4.11017 1.22317 2.70474 2.98444 3.08996 3.15358 3.19699 3.34530 3.62007 3.84862 4.10782 4.36008 4.46763 4.92891 4.97265 5.09651 5.30156 5.32868 5.60171 5.71079 5.76763 5.89212 6.27259 6.52198 6.56880 6.61198 6.73764 7.05651 7.26871 7.33213 7.47169 7.56253 7.60155 8.02030 8.24864 8.88733 8.99737 9.16470 9.67104 10.36797 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.023082 B = 0.006462 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.781028 B = 4332.201730 C = 5301.530890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.419 5.419 3 C 0.017 3.983 4 C -0.226 4.226 5 C -0.085 4.085 6 C -0.079 4.079 7 C 0.408 3.592 8 O -0.484 6.484 9 C 0.408 3.592 10 O -0.564 6.564 11 N -0.378 5.378 12 C -0.295 4.295 13 H 0.115 0.885 14 C 0.034 3.966 15 N -0.867 5.867 16 Si 0.944 3.056 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.264 1.264 20 C 0.127 3.873 21 C 0.512 3.488 22 O -0.524 6.524 23 O -0.529 6.529 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.102 0.898 27 H 0.165 0.835 28 H 0.140 0.860 29 H 0.169 0.831 30 H 0.279 0.721 31 H 0.101 0.899 32 H 0.139 0.861 33 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.893 9.294 -2.742 10.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.092 5.092 3 C -0.120 4.120 4 C -0.251 4.251 5 C -0.111 4.111 6 C -0.188 4.188 7 C 0.291 3.709 8 O -0.365 6.365 9 C 0.197 3.803 10 O -0.450 6.450 11 N -0.097 5.097 12 C -0.423 4.423 13 H 0.132 0.868 14 C -0.171 4.171 15 N -0.507 5.507 16 Si 0.769 3.231 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.188 1.188 20 C 0.002 3.998 21 C 0.354 3.646 22 O -0.411 6.411 23 O -0.339 6.339 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.120 0.880 27 H 0.182 0.818 28 H 0.158 0.842 29 H 0.187 0.813 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.156 0.844 33 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -5.097 9.135 -2.767 10.820 hybrid contribution 0.063 -0.671 0.879 1.107 sum -5.034 8.464 -1.888 10.027 Atomic orbital electron populations 1.22230 0.76659 1.04868 1.03643 1.44046 1.06525 1.05420 1.53243 1.22104 0.91039 0.91304 1.07532 1.20991 0.95698 0.95674 1.12710 1.22317 0.96213 0.94554 0.97997 1.19608 0.91134 0.88001 1.20037 1.20405 0.88992 0.88446 0.73081 1.90485 1.19376 1.86719 1.39892 1.19407 0.89248 0.83853 0.87834 1.90533 1.17085 1.82388 1.54947 1.43180 1.05098 1.05233 1.56159 1.19965 0.94158 0.85351 1.42857 0.86771 1.25626 0.97272 0.99470 0.94743 1.69529 1.17751 1.22448 1.40924 0.85641 0.79564 0.78623 0.79262 1.19871 1.20495 1.18844 1.21259 0.81473 1.05554 0.91528 1.23418 0.78364 0.69704 0.93078 1.90593 1.61576 1.47156 1.41751 1.84512 1.28165 1.84732 1.36499 0.90922 0.90294 0.87970 0.81811 0.84192 0.81346 0.91000 0.88196 0.84403 0.75436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 10.54 59.85 0.63 1.48 16 2 N -0.42 -6.71 3.17 -121.52 -0.38 -7.10 16 3 C 0.02 0.23 11.39 -16.80 -0.19 0.04 16 4 C -0.23 -3.40 10.81 -40.00 -0.43 -3.83 16 5 C -0.09 -1.62 9.93 -38.97 -0.39 -2.01 16 6 C -0.08 -1.58 6.72 -83.69 -0.56 -2.14 16 7 C 0.41 9.24 6.83 -34.05 -0.23 9.00 16 8 O -0.48 -10.58 10.40 5.16 0.05 -10.53 16 9 C 0.41 10.55 7.27 -12.07 -0.09 10.46 16 10 O -0.56 -15.38 13.79 5.32 0.07 -15.30 16 11 N -0.38 -9.93 2.19 -117.00 -0.26 -10.19 16 12 C -0.30 -7.95 9.30 -15.16 -0.14 -8.09 16 13 H 0.11 3.11 7.40 -52.49 -0.39 2.72 16 14 C 0.03 0.87 5.26 -17.38 -0.09 0.78 16 15 N -0.87 -22.10 8.87 55.54 0.49 -21.60 16 16 Si 0.94 19.81 29.56 -169.99 -5.02 14.79 16 17 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 18 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 20 C 0.13 3.02 4.78 -5.19 -0.02 3.00 16 21 C 0.51 12.41 5.30 36.01 0.19 12.60 16 22 O -0.52 -14.55 16.94 -18.75 -0.32 -14.87 16 23 O -0.53 -10.54 13.42 -39.25 -0.53 -11.06 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.10 1.45 6.27 -51.93 -0.33 1.12 16 27 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.17 3.45 6.10 -52.49 -0.32 3.13 16 30 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 31 H 0.10 2.19 5.65 -51.92 -0.29 1.90 16 32 H 0.14 3.31 5.99 -51.93 -0.31 2.99 16 33 H 0.39 6.02 9.10 45.56 0.41 6.44 16 LS Contribution 288.98 15.07 4.35 4.35 Total: -1.00 -33.32 288.98 -4.91 -38.24 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -2.05 Total: 11.99 kcal Atomic # 6 Polarization: 22.61 SS G_CDS: -1.33 Total: 21.28 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: -0.15 Total: -38.88 kcal Atomic # 8 Polarization: -51.05 SS G_CDS: -0.72 Total: -51.77 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.32 -4.91 -38.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600979405.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.498 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds