Wall clock time and date at job start Tue Mar 31 2020 02:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35522 * 125.69075 * 2 1 4 4 C 1.35787 * 108.95784 * 180.22444 * 3 2 1 5 5 C 1.39481 * 107.94328 * 359.77238 * 4 3 2 6 6 C 1.37793 * 125.69016 * 179.82524 * 2 1 3 7 7 C 1.41752 * 126.28469 * 0.03969 * 6 2 1 8 8 O 1.21730 * 119.99687 * 359.70988 * 7 6 2 9 9 C 1.48422 * 119.99918 * 179.71376 * 7 6 2 10 10 O 1.21556 * 119.99835 * 8.30377 * 9 7 6 11 11 N 1.34770 * 119.99756 * 188.02697 * 9 7 6 12 12 C 1.35971 * 119.99853 * 177.13011 * 11 9 7 13 13 H 1.07994 * 120.00125 * 337.76376 * 12 11 9 14 14 C 1.39740 * 119.99716 * 157.76305 * 12 11 9 15 15 N 1.30922 * 120.00502 * 357.01926 * 14 12 11 16 16 Si 1.86807 * 119.99467 * 177.01822 * 14 12 11 17 17 H 1.48496 * 109.46776 * 90.00378 * 16 14 12 18 18 H 1.48500 * 109.46636 * 210.00186 * 16 14 12 19 19 H 1.48500 * 109.47005 * 329.99878 * 16 14 12 20 20 C 1.46499 * 120.00297 * 357.12427 * 11 9 7 21 21 C 1.50702 * 109.47495 * 278.31528 * 20 11 9 22 22 O 1.20831 * 119.99495 * 359.97438 * 21 20 11 23 23 O 1.34229 * 119.99965 * 179.97438 * 21 20 11 24 24 H 1.09002 * 109.47347 * 270.17440 * 1 2 3 25 25 H 1.08996 * 109.47294 * 30.17352 * 1 2 3 26 26 H 1.09002 * 109.47202 * 150.17446 * 1 2 3 27 27 H 1.08002 * 125.52608 * 359.97438 * 3 2 1 28 28 H 1.08001 * 126.03407 * 179.74352 * 4 3 2 29 29 H 1.07996 * 126.47797 * 180.02562 * 5 4 3 30 30 H 0.96990 * 120.00193 * 179.97438 * 15 14 12 31 31 H 1.09010 * 109.46911 * 38.31654 * 20 11 9 32 32 H 1.08999 * 109.47367 * 158.31376 * 20 11 9 33 33 H 0.96697 * 116.99512 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2557 1.1007 0.0000 4 6 3.5560 0.7097 -0.0050 5 6 3.5855 -0.6848 -0.0030 6 6 2.2689 -1.1191 0.0034 7 6 1.8303 -2.4671 0.0067 8 8 0.6394 -2.7196 0.0121 9 6 2.8229 -3.5705 0.0038 10 8 4.0044 -3.3255 0.1506 11 7 2.4137 -4.8446 -0.1561 12 6 3.3275 -5.8495 -0.2173 13 1 4.3483 -5.6349 -0.4969 14 6 2.9458 -7.1601 0.0816 15 7 1.7234 -7.4120 0.4770 16 14 4.1798 -8.5528 -0.0830 17 1 4.8981 -8.7324 1.2043 18 1 3.4662 -9.8078 -0.4309 19 1 5.1559 -8.2254 -1.1532 20 6 0.9843 -5.1468 -0.2638 21 6 0.3772 -5.2023 1.1144 22 8 1.0679 -5.0096 2.0869 23 8 -0.9307 -5.4657 1.2616 24 1 -0.3634 0.0031 1.0277 25 1 -0.3634 0.8884 -0.5165 26 1 -0.3634 -0.8916 -0.5111 27 1 1.9079 2.1232 -0.0004 28 1 4.4159 1.3632 -0.0102 29 1 4.4672 -1.3083 -0.0055 30 1 1.4583 -8.3217 0.6841 31 1 0.4913 -4.3688 -0.8469 32 1 0.8526 -6.1095 -0.7578 33 1 -1.2744 -5.4912 2.1651 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600979405.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:40 Heat of formation + Delta-G solvation = -98.078645 kcal Electronic energy + Delta-G solvation = -22606.822421 eV Core-core repulsion = 19020.547491 eV Total energy + Delta-G solvation = -3586.274929 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.53776 -41.40784 -40.23553 -38.93094 -37.19944 -36.52074 -33.86605 -33.81858 -30.90287 -29.69907 -27.76385 -27.38066 -25.38662 -23.01026 -22.50883 -21.27408 -20.01211 -19.28267 -18.80132 -18.04099 -17.96169 -17.66437 -16.96591 -16.55586 -16.29371 -16.08015 -15.57756 -15.50480 -15.09766 -14.52938 -14.41033 -14.14748 -13.80273 -13.76420 -13.25497 -13.14026 -13.12450 -12.90537 -12.82267 -12.56371 -12.25991 -12.10749 -11.72549 -11.67090 -11.08626 -10.13090 -10.01700 -9.68052 -9.23243 -8.53100 -6.15006 -0.37631 1.18736 1.39400 1.49312 1.53691 1.69961 1.74446 1.93280 2.16578 2.36098 2.55110 2.73891 3.04641 3.47572 3.97647 4.09957 4.17461 4.37254 4.43481 4.52673 4.62136 4.73372 4.78470 4.85161 5.21115 5.27775 5.32307 5.61271 5.81607 5.85185 5.90375 6.16320 6.35518 6.43363 6.90959 7.06391 7.34439 7.70351 8.44062 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.023082 B = 0.006462 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.781028 B = 4332.201730 C = 5301.530890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.417 5.417 3 C 0.059 3.941 4 C -0.234 4.234 5 C -0.100 4.100 6 C -0.127 4.127 7 C 0.411 3.589 8 O -0.488 6.488 9 C 0.389 3.611 10 O -0.593 6.593 11 N -0.392 5.392 12 C -0.338 4.338 13 H 0.096 0.904 14 C 0.003 3.997 15 N -0.882 5.882 16 Si 1.009 2.991 17 H -0.280 1.280 18 H -0.260 1.260 19 H -0.259 1.259 20 C 0.130 3.870 21 C 0.519 3.481 22 O -0.566 6.566 23 O -0.514 6.514 24 H 0.079 0.921 25 H 0.127 0.873 26 H 0.081 0.919 27 H 0.225 0.775 28 H 0.172 0.828 29 H 0.141 0.859 30 H 0.285 0.715 31 H 0.116 0.884 32 H 0.135 0.865 33 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.116 11.350 -2.971 13.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.090 5.090 3 C -0.079 4.079 4 C -0.257 4.257 5 C -0.127 4.127 6 C -0.236 4.236 7 C 0.295 3.705 8 O -0.370 6.370 9 C 0.179 3.821 10 O -0.480 6.480 11 N -0.110 5.110 12 C -0.466 4.466 13 H 0.114 0.886 14 C -0.201 4.201 15 N -0.520 5.520 16 Si 0.831 3.169 17 H -0.206 1.206 18 H -0.185 1.185 19 H -0.183 1.183 20 C 0.005 3.995 21 C 0.363 3.637 22 O -0.456 6.456 23 O -0.325 6.325 24 H 0.097 0.903 25 H 0.145 0.855 26 H 0.099 0.901 27 H 0.241 0.759 28 H 0.189 0.811 29 H 0.158 0.842 30 H 0.096 0.904 31 H 0.133 0.867 32 H 0.152 0.848 33 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -6.391 11.167 -3.003 13.212 hybrid contribution 0.382 -1.107 0.977 1.525 sum -6.009 10.060 -2.026 11.892 Atomic orbital electron populations 1.22471 0.74623 1.06243 1.04502 1.44312 1.07836 1.04688 1.52190 1.23073 0.89986 0.92762 1.02115 1.21370 0.97961 0.93789 1.12549 1.22297 0.95256 0.96774 0.98374 1.19246 0.92316 0.87981 1.24021 1.20062 0.88295 0.88977 0.73201 1.90446 1.18769 1.86879 1.40887 1.20233 0.89893 0.84786 0.87201 1.90487 1.18446 1.83133 1.55933 1.43368 1.05907 1.05403 1.56294 1.20011 0.94109 0.86702 1.45802 0.88585 1.26463 0.99124 1.00949 0.93539 1.69583 1.18758 1.23219 1.40477 0.84704 0.77413 0.76010 0.78811 1.20594 1.18454 1.18289 1.21295 0.80637 1.05747 0.91789 1.23402 0.79127 0.68652 0.92555 1.90574 1.62905 1.49228 1.42936 1.84436 1.25882 1.83735 1.38461 0.90278 0.85463 0.90076 0.75880 0.81096 0.84165 0.90437 0.86694 0.84787 0.72831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.35 10.54 127.77 1.35 2.70 16 2 N -0.42 -12.21 3.17 -538.37 -1.70 -13.92 16 3 C 0.06 1.31 11.39 83.55 0.95 2.26 16 4 C -0.23 -6.34 10.81 22.00 0.24 -6.11 16 5 C -0.10 -3.85 9.93 22.67 0.23 -3.62 16 6 C -0.13 -5.10 6.72 39.17 0.26 -4.84 16 7 C 0.41 19.22 6.83 25.86 0.18 19.40 16 8 O -0.49 -21.73 10.40 -4.45 -0.05 -21.77 16 9 C 0.39 21.31 7.27 86.96 0.63 21.95 16 10 O -0.59 -34.59 13.79 -3.89 -0.05 -34.64 16 11 N -0.39 -21.59 2.19 -642.36 -1.41 -23.00 16 12 C -0.34 -19.17 9.30 84.42 0.79 -18.39 16 13 H 0.10 5.60 7.40 -2.91 -0.02 5.58 16 14 C 0.00 0.15 5.26 85.19 0.45 0.60 16 15 N -0.88 -45.51 8.87 21.79 0.19 -45.32 16 16 Si 1.01 41.18 29.56 68.60 2.03 43.20 16 17 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 19 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 20 C 0.13 6.36 4.78 85.63 0.41 6.77 16 21 C 0.52 25.46 5.30 71.24 0.38 25.83 16 22 O -0.57 -32.24 16.94 21.95 0.37 -31.86 16 23 O -0.51 -20.03 13.42 -51.41 -0.69 -20.72 16 24 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.08 2.17 6.27 -2.39 -0.01 2.16 16 27 H 0.22 2.29 8.06 -2.91 -0.02 2.27 16 28 H 0.17 3.48 8.06 -2.91 -0.02 3.45 16 29 H 0.14 6.13 6.10 -2.91 -0.02 6.11 16 30 H 0.28 13.64 8.30 -92.72 -0.77 12.87 16 31 H 0.12 5.19 5.65 -2.38 -0.01 5.17 16 32 H 0.13 6.61 5.99 -2.39 -0.01 6.59 16 33 H 0.41 12.15 9.10 -74.06 -0.67 11.48 16 Total: -1.00 -77.23 288.98 5.06 -72.18 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: 0.51 Total: 29.28 kcal Atomic # 6 Polarization: 40.71 SS G_CDS: 5.85 Total: 46.56 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -2.92 Total: -82.23 kcal Atomic # 8 Polarization: -108.58 SS G_CDS: -0.42 Total: -109.00 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.20 kcal Total: -77.23 5.06 -72.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600979405.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.902 kcal (2) G-P(sol) polarization free energy of solvation -77.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds