Wall clock time and date at job start Tue Mar 31 2020 01:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2 11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2 12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7 13 13 C 1.34774 * 134.45633 * 204.64086 * 12 11 9 14 14 O 1.21609 * 120.00430 * 179.86569 * 13 12 11 15 15 C 1.47400 * 120.00144 * 359.87224 * 13 12 11 16 16 C 1.38248 * 126.45097 * 0.02562 * 15 13 12 17 17 N 1.34234 * 108.41523 * 179.97438 * 16 15 13 18 18 H 0.96996 * 125.39890 * 179.97438 * 17 16 15 19 19 C 1.37837 * 109.20783 * 359.97438 * 17 16 15 20 20 C 1.46632 * 125.85817 * 180.02562 * 19 17 16 21 21 O 1.21606 * 119.99636 * 179.97438 * 20 19 17 22 22 O 1.34866 * 120.00260 * 359.96967 * 20 19 17 23 23 C 1.36445 * 108.27958 * 359.76613 * 19 17 16 24 24 C 1.47586 * 91.05425 * 24.54926 * 12 11 9 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 0.96700 * 113.99800 * 309.66654 * 10 9 7 27 27 H 1.08995 * 113.76496 * 336.35212 * 11 9 7 28 28 H 1.09005 * 113.76577 * 107.74446 * 11 9 7 29 29 H 1.07993 * 125.79407 * 359.97438 * 16 15 13 30 30 H 0.96701 * 117.00252 * 180.02562 * 22 20 19 31 31 H 1.07998 * 126.49991 * 180.22894 * 23 19 17 32 32 H 1.08993 * 113.76952 * 221.15022 * 24 12 11 33 33 H 1.08995 * 113.86700 * 89.76371 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7562 -2.9292 1.3924 12 7 1.1919 -4.2900 1.0142 13 6 0.8427 -5.5338 1.3981 14 8 1.3861 -6.4998 0.8977 15 6 -0.1981 -5.7234 2.4245 16 6 -0.8991 -4.7266 3.0774 17 7 -1.7555 -5.3028 3.9355 18 1 -2.3683 -4.8301 4.5202 19 6 -1.6262 -6.6727 3.8541 20 6 -2.3877 -7.6551 4.6320 21 8 -2.1865 -8.8439 4.4736 22 8 -3.3112 -7.2402 5.5230 23 6 -0.6720 -6.9578 2.9214 24 6 2.1609 -3.7402 0.0462 25 1 -0.4850 0.8401 0.0004 26 1 -0.3474 -1.7969 -1.0267 27 1 1.3275 -2.4975 2.2141 28 1 -0.3215 -2.8326 1.5249 29 1 -0.7781 -3.6646 2.9232 30 1 -3.7876 -7.9248 6.0125 31 1 -0.3400 -7.9408 2.6218 32 1 2.2027 -4.2899 -0.8940 33 1 3.1462 -3.5468 0.4700 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061999.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:02 Heat of formation + Delta-G solvation = -90.214582 kcal Electronic energy + Delta-G solvation = -21347.121250 eV Core-core repulsion = 17761.187332 eV Total energy + Delta-G solvation = -3585.933918 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.61946 -39.87307 -39.14586 -37.10159 -36.31652 -33.96149 -32.26310 -31.44505 -30.20168 -28.34934 -25.61836 -25.41899 -23.87993 -22.39755 -20.45034 -19.86962 -19.30956 -17.96874 -17.81289 -17.23755 -16.34550 -15.99887 -15.39777 -15.11921 -14.82652 -14.71047 -14.23971 -13.94405 -13.64449 -13.51328 -13.03598 -12.75695 -12.37033 -12.15607 -11.97273 -11.84596 -11.60189 -11.09666 -11.05146 -11.00405 -10.56850 -10.32919 -9.70507 -9.24771 -9.17263 -8.80625 -8.52655 -8.43647 -7.82197 -6.44013 -4.54029 1.08354 1.96410 2.64238 2.89534 2.97521 3.13208 3.19295 3.22176 3.62315 3.95579 4.15568 4.79647 4.87226 4.97672 4.98638 5.23398 5.54142 5.71758 5.87028 5.89936 6.16569 6.19184 6.34500 6.37982 6.45599 6.58242 6.60680 6.74599 7.06473 7.13534 7.58581 7.64032 7.78320 8.48920 8.49733 8.84818 9.17466 9.39175 10.62542 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.028993 B = 0.004038 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.506689 B = 6932.772301 C = 7569.984619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.073 3.927 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.239 3.761 10 O -0.571 6.571 11 C 0.072 3.928 12 N -0.630 5.630 13 C 0.601 3.399 14 O -0.563 6.563 15 C -0.219 4.219 16 C 0.087 3.913 17 N -0.519 5.519 18 H 0.427 0.573 19 C -0.065 4.065 20 C 0.557 3.443 21 O -0.507 6.507 22 O -0.522 6.522 23 C -0.031 4.031 24 C 0.114 3.886 25 H 0.273 0.727 26 H 0.391 0.609 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.194 0.806 30 H 0.416 0.584 31 H 0.161 0.839 32 H 0.071 0.929 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.079 -4.518 10.448 12.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.129 4.129 3 Si 0.734 3.266 4 H -0.211 1.211 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.198 3.802 10 O -0.382 6.382 11 C -0.051 4.051 12 N -0.363 5.363 13 C 0.391 3.609 14 O -0.444 6.444 15 C -0.228 4.228 16 C -0.055 4.055 17 N -0.113 5.113 18 H 0.265 0.735 19 C -0.173 4.173 20 C 0.402 3.598 21 O -0.395 6.395 22 O -0.335 6.335 23 C -0.057 4.057 24 C -0.007 4.007 25 H 0.083 0.917 26 H 0.246 0.754 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.210 0.790 30 H 0.275 0.725 31 H 0.178 0.822 32 H 0.090 0.910 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.592 -5.673 9.973 12.764 hybrid contribution -0.576 1.296 0.899 1.679 sum -6.167 -4.377 10.872 13.244 Atomic orbital electron populations 1.69389 1.06147 1.28258 1.50175 1.25053 0.95019 0.99803 0.93055 0.86403 0.79524 0.81652 0.79035 1.21053 1.19908 1.19839 1.21492 0.93979 0.89960 1.52104 0.91048 1.19835 0.85700 0.91249 0.83448 1.86086 1.47026 1.49756 1.55376 1.24455 0.99524 0.78066 1.03032 1.50008 1.40258 1.04366 1.41631 1.16921 0.81520 0.81765 0.80689 1.90720 1.56728 1.39441 1.57540 1.19771 1.04931 0.92861 1.05259 1.23270 0.91069 0.99949 0.91258 1.41749 1.31480 1.05773 1.32326 0.73473 1.18789 1.07984 0.82054 1.08478 1.19470 0.76817 0.86692 0.76787 1.90968 1.65749 1.17154 1.65639 1.84559 1.51066 1.45520 1.52364 1.21132 0.92836 0.99007 0.92713 1.23433 0.93268 0.92577 0.91455 0.91664 0.75442 0.89791 0.91238 0.78957 0.72451 0.82180 0.91008 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.48 11.20 55.43 0.62 -20.86 16 2 C 0.07 1.73 5.40 -17.82 -0.10 1.64 16 3 Si 0.91 18.64 29.54 -169.99 -5.02 13.62 16 4 H -0.29 -5.86 7.11 56.52 0.40 -5.45 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.54 -12.82 8.61 -34.44 -0.30 -13.12 16 8 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.24 5.44 1.40 -90.84 -0.13 5.31 16 10 O -0.57 -14.06 13.49 -35.23 -0.48 -14.54 16 11 C 0.07 1.41 6.56 -2.84 -0.02 1.39 16 12 N -0.63 -12.91 3.61 -179.38 -0.65 -13.56 16 13 C 0.60 12.50 8.04 -12.53 -0.10 12.40 16 14 O -0.56 -13.43 17.65 5.27 0.09 -13.34 16 15 C -0.22 -3.72 6.13 -105.02 -0.64 -4.37 16 16 C 0.09 1.16 11.03 -16.50 -0.18 0.98 16 17 N -0.52 -5.68 6.01 -9.32 -0.06 -5.74 16 18 H 0.43 3.20 8.96 -40.82 -0.37 2.84 16 19 C -0.06 -0.86 7.02 -82.43 -0.58 -1.43 16 20 C 0.56 6.72 8.31 34.12 0.28 7.01 16 21 O -0.51 -7.57 17.65 -19.35 -0.34 -7.91 16 22 O -0.52 -4.19 13.44 -40.95 -0.55 -4.74 16 23 C -0.03 -0.48 10.37 -39.08 -0.41 -0.89 16 24 C 0.11 2.42 8.23 -2.96 -0.02 2.40 16 25 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 26 H 0.39 9.64 6.60 45.56 0.30 9.95 16 27 H 0.08 1.55 8.09 -51.93 -0.42 1.13 16 28 H 0.07 1.28 6.26 -51.93 -0.32 0.96 16 29 H 0.19 2.35 5.06 -52.49 -0.27 2.09 16 30 H 0.42 1.44 9.11 45.56 0.42 1.86 16 31 H 0.16 2.55 8.06 -52.49 -0.42 2.13 16 32 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.09 1.67 8.09 -51.93 -0.42 1.25 16 LS Contribution 299.49 15.07 4.51 4.51 Total: -1.00 -31.14 299.49 -5.53 -36.66 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -1.47 Total: 14.58 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: -2.19 Total: 11.31 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: -0.08 Total: -40.16 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -1.27 Total: -40.53 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.14 -5.53 -36.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061999.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.550 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds