Wall clock time and date at job start Tue Mar 31 2020 01:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2 11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2 12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7 13 13 C 1.34774 * 134.45633 * 204.64086 * 12 11 9 14 14 O 1.21609 * 120.00430 * 179.86569 * 13 12 11 15 15 C 1.47400 * 120.00144 * 359.87224 * 13 12 11 16 16 C 1.38248 * 126.45097 * 0.02562 * 15 13 12 17 17 N 1.34234 * 108.41523 * 179.97438 * 16 15 13 18 18 H 0.96996 * 125.39890 * 179.97438 * 17 16 15 19 19 C 1.37837 * 109.20783 * 359.97438 * 17 16 15 20 20 C 1.46632 * 125.85817 * 180.02562 * 19 17 16 21 21 O 1.21606 * 119.99636 * 179.97438 * 20 19 17 22 22 O 1.34866 * 120.00260 * 359.96967 * 20 19 17 23 23 C 1.36445 * 108.27958 * 359.76613 * 19 17 16 24 24 C 1.47586 * 91.05425 * 24.54926 * 12 11 9 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 0.96700 * 113.99800 * 309.66654 * 10 9 7 27 27 H 1.08995 * 113.76496 * 336.35212 * 11 9 7 28 28 H 1.09005 * 113.76577 * 107.74446 * 11 9 7 29 29 H 1.07993 * 125.79407 * 359.97438 * 16 15 13 30 30 H 0.96701 * 117.00252 * 180.02562 * 22 20 19 31 31 H 1.07998 * 126.49991 * 180.22894 * 23 19 17 32 32 H 1.08993 * 113.76952 * 221.15022 * 24 12 11 33 33 H 1.08995 * 113.86700 * 89.76371 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7562 -2.9292 1.3924 12 7 1.1919 -4.2900 1.0142 13 6 0.8427 -5.5338 1.3981 14 8 1.3861 -6.4998 0.8977 15 6 -0.1981 -5.7234 2.4245 16 6 -0.8991 -4.7266 3.0774 17 7 -1.7555 -5.3028 3.9355 18 1 -2.3683 -4.8301 4.5202 19 6 -1.6262 -6.6727 3.8541 20 6 -2.3877 -7.6551 4.6320 21 8 -2.1865 -8.8439 4.4736 22 8 -3.3112 -7.2402 5.5230 23 6 -0.6720 -6.9578 2.9214 24 6 2.1609 -3.7402 0.0462 25 1 -0.4850 0.8401 0.0004 26 1 -0.3474 -1.7969 -1.0267 27 1 1.3275 -2.4975 2.2141 28 1 -0.3215 -2.8326 1.5249 29 1 -0.7781 -3.6646 2.9232 30 1 -3.7876 -7.9248 6.0125 31 1 -0.3400 -7.9408 2.6218 32 1 2.2027 -4.2899 -0.8940 33 1 3.1462 -3.5468 0.4700 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601061999.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:02 Heat of formation + Delta-G solvation = -115.599383 kcal Electronic energy + Delta-G solvation = -21348.222018 eV Core-core repulsion = 17761.187332 eV Total energy + Delta-G solvation = -3587.034686 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.72782 -41.05970 -40.53502 -38.79169 -37.17402 -35.75992 -34.09660 -32.65854 -31.41114 -29.91745 -27.24782 -27.07299 -24.97138 -23.76092 -21.61246 -21.25730 -20.55622 -19.46727 -18.90057 -18.79172 -17.73044 -17.10946 -16.96539 -16.42115 -16.31160 -16.20658 -15.89667 -15.20006 -14.89463 -14.58105 -14.46813 -14.33840 -13.94286 -13.67109 -13.52598 -13.35400 -12.74586 -12.69837 -12.68270 -12.21090 -12.14828 -12.02396 -11.42607 -10.96733 -10.59410 -10.35388 -10.18504 -9.70929 -9.43699 -8.22001 -6.37809 0.05732 0.66536 1.51596 1.55146 1.60831 1.69714 1.85409 1.88662 2.24481 2.43501 2.48985 3.01374 3.57025 3.81167 3.93719 3.95843 4.11058 4.21960 4.52473 4.59420 4.66642 4.73287 4.86648 4.96277 5.02091 5.27567 5.34608 5.40504 5.51369 5.77785 5.99150 6.25818 6.67050 6.86526 6.89255 7.23606 7.35851 7.51421 8.83654 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.028993 B = 0.004038 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.506689 B = 6932.772301 C = 7569.984619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.040 3.960 3 Si 0.963 3.037 4 H -0.283 1.283 5 H -0.267 1.267 6 H -0.280 1.280 7 C -0.557 4.557 8 H 0.070 0.930 9 C 0.220 3.780 10 O -0.586 6.586 11 C 0.089 3.911 12 N -0.631 5.631 13 C 0.594 3.406 14 O -0.607 6.607 15 C -0.253 4.253 16 C 0.112 3.888 17 N -0.490 5.490 18 H 0.448 0.552 19 C -0.054 4.054 20 C 0.569 3.431 21 O -0.539 6.539 22 O -0.503 6.503 23 C -0.054 4.054 24 C 0.110 3.890 25 H 0.276 0.724 26 H 0.388 0.612 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.210 0.790 30 H 0.440 0.560 31 H 0.147 0.853 32 H 0.055 0.945 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.308 -3.240 12.544 14.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.162 4.162 3 Si 0.789 3.211 4 H -0.208 1.208 5 H -0.192 1.192 6 H -0.206 1.206 7 C -0.595 4.595 8 H 0.088 0.912 9 C 0.179 3.821 10 O -0.398 6.398 11 C -0.033 4.033 12 N -0.363 5.363 13 C 0.387 3.613 14 O -0.491 6.491 15 C -0.262 4.262 16 C -0.033 4.033 17 N -0.086 5.086 18 H 0.291 0.709 19 C -0.163 4.163 20 C 0.415 3.585 21 O -0.430 6.430 22 O -0.318 6.318 23 C -0.080 4.080 24 C -0.012 4.012 25 H 0.086 0.914 26 H 0.242 0.758 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.227 0.773 30 H 0.303 0.697 31 H 0.164 0.836 32 H 0.074 0.926 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.873 -4.377 12.128 14.611 hybrid contribution -0.264 0.886 0.275 0.965 sum -7.137 -3.491 12.403 14.729 Atomic orbital electron populations 1.69438 1.06835 1.28904 1.50089 1.25627 0.95730 1.02101 0.92695 0.85528 0.78358 0.78491 0.78744 1.20841 1.19235 1.20552 1.21685 0.94127 0.90792 1.52878 0.91203 1.20095 0.85864 0.91449 0.84724 1.86078 1.47462 1.49641 1.56622 1.24329 1.00521 0.76953 1.01523 1.50022 1.40059 1.04797 1.41392 1.17494 0.81830 0.81070 0.80934 1.90679 1.58484 1.40601 1.59350 1.19508 1.05870 0.94598 1.06215 1.23247 0.90015 0.99796 0.90230 1.41654 1.30630 1.04935 1.31385 0.70905 1.18765 1.06973 0.83077 1.07472 1.19183 0.76911 0.85623 0.76819 1.90972 1.66842 1.18429 1.66725 1.84498 1.49849 1.46173 1.51265 1.21082 0.94345 0.98352 0.94214 1.23480 0.94224 0.92073 0.91448 0.91449 0.75809 0.88160 0.89901 0.77338 0.69683 0.83570 0.92594 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -42.51 11.20 21.45 0.24 -42.27 16 2 C 0.04 1.82 5.40 84.66 0.46 2.28 16 3 Si 0.96 37.23 29.54 68.60 2.03 39.26 16 4 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 6 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.56 -26.22 8.61 25.60 0.22 -26.00 16 8 H 0.07 3.23 7.81 -2.91 -0.02 3.20 16 9 C 0.22 9.93 1.40 -10.88 -0.02 9.92 16 10 O -0.59 -29.09 13.49 -148.98 -2.01 -31.10 16 11 C 0.09 3.34 6.56 86.45 0.57 3.91 16 12 N -0.63 -25.81 3.61 -843.51 -3.05 -28.86 16 13 C 0.59 25.09 8.04 86.66 0.70 25.79 16 14 O -0.61 -30.07 17.65 -4.06 -0.07 -30.14 16 15 C -0.25 -8.47 6.13 -20.12 -0.12 -8.59 16 16 C 0.11 2.72 11.03 84.33 0.93 3.65 16 17 N -0.49 -9.12 6.01 -183.40 -1.10 -10.22 16 18 H 0.45 4.72 8.96 -92.71 -0.83 3.88 16 19 C -0.05 -1.30 7.02 39.97 0.28 -1.02 16 20 C 0.57 12.36 8.31 70.01 0.58 12.94 16 21 O -0.54 -15.43 17.65 19.49 0.34 -15.08 16 22 O -0.50 -6.13 13.44 -57.79 -0.78 -6.90 16 23 C -0.05 -1.70 10.37 22.59 0.23 -1.46 16 24 C 0.11 4.71 8.23 86.49 0.71 5.43 16 25 H 0.28 12.24 8.31 -92.71 -0.77 11.47 16 26 H 0.39 19.20 6.60 -74.06 -0.49 18.71 16 27 H 0.10 3.46 8.09 -2.39 -0.02 3.45 16 28 H 0.08 2.89 6.26 -2.38 -0.01 2.87 16 29 H 0.21 4.40 5.06 -2.91 -0.01 4.38 16 30 H 0.44 1.29 9.11 -74.06 -0.67 0.61 16 31 H 0.15 4.89 8.06 -2.91 -0.02 4.87 16 32 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.10 3.99 8.09 -2.39 -0.02 3.97 16 Total: -1.00 -67.64 299.49 -0.63 -68.28 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: -0.78 Total: 30.19 kcal Atomic # 6 Polarization: 22.30 SS G_CDS: 4.54 Total: 26.84 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -3.91 Total: -81.35 kcal Atomic # 8 Polarization: -80.71 SS G_CDS: -2.51 Total: -83.23 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.26 kcal Total: -67.64 -0.63 -68.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061999.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.321 kcal (2) G-P(sol) polarization free energy of solvation -67.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds