Wall clock time and date at job start Tue Mar 31 2020 01:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2 11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2 12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7 13 13 C 1.34774 * 134.45633 * 204.64086 * 12 11 9 14 14 O 1.21609 * 120.00430 * 179.86569 * 13 12 11 15 15 C 1.47329 * 119.99852 * 359.87322 * 13 12 11 16 16 C 1.37947 * 125.88853 * 179.69246 * 15 13 12 17 17 C 1.39421 * 107.47634 * 179.89764 * 16 15 13 18 18 C 1.38014 * 107.44540 * 0.35936 * 17 16 15 19 19 C 1.47143 * 125.90821 * 179.77840 * 18 17 16 20 20 O 1.21533 * 120.00084 * 359.97438 * 19 18 17 21 21 O 1.34821 * 119.99586 * 179.97438 * 19 18 17 22 22 N 1.36705 * 125.88991 * 359.97438 * 15 13 12 23 23 H 0.97005 * 125.66266 * 359.97362 * 22 15 13 24 24 C 1.47586 * 91.05425 * 24.54926 * 12 11 9 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 0.96700 * 113.99800 * 309.66654 * 10 9 7 27 27 H 1.08995 * 113.76496 * 336.35212 * 11 9 7 28 28 H 1.09005 * 113.76577 * 107.74446 * 11 9 7 29 29 H 1.08003 * 126.26154 * 359.97438 * 16 15 13 30 30 H 1.07992 * 126.27958 * 180.13701 * 17 16 15 31 31 H 0.96698 * 116.99824 * 179.97438 * 21 19 18 32 32 H 1.08993 * 113.76952 * 221.15022 * 24 12 11 33 33 H 1.08995 * 113.86700 * 89.76371 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7562 -2.9292 1.3924 12 7 1.1919 -4.2900 1.0142 13 6 0.8427 -5.5338 1.3981 14 8 1.3861 -6.4998 0.8977 15 6 -0.1976 -5.7232 2.4240 16 6 -0.6516 -6.9353 2.9011 17 6 -1.6302 -6.6687 3.8578 18 6 -1.7630 -5.2976 3.9428 19 6 -2.6900 -4.5736 4.8269 20 8 -3.4283 -5.1905 5.5694 21 8 -2.7204 -3.2258 4.8131 22 7 -0.8833 -4.7283 3.0633 23 1 -0.7658 -3.7765 2.9174 24 6 2.1609 -3.7402 0.0462 25 1 -0.4850 0.8401 0.0004 26 1 -0.3474 -1.7969 -1.0267 27 1 1.3275 -2.4975 2.2141 28 1 -0.3215 -2.8326 1.5249 29 1 -0.3105 -7.9121 2.5912 30 1 -2.1852 -7.4009 4.4253 31 1 -3.3461 -2.7947 5.4111 32 1 2.2027 -4.2899 -0.8940 33 1 3.1462 -3.5468 0.4700 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601062897.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:34 Heat of formation + Delta-G solvation = -92.416249 kcal Electronic energy + Delta-G solvation = -21681.253239 eV Core-core repulsion = 18095.223850 eV Total energy + Delta-G solvation = -3586.029389 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.54179 -39.91837 -39.20792 -37.37438 -36.25436 -34.16212 -32.36665 -31.31283 -30.26414 -28.51949 -25.76476 -25.61978 -24.24389 -21.76669 -20.55421 -19.89985 -19.47888 -18.31474 -17.78959 -17.33498 -16.53841 -15.95533 -15.67646 -15.14572 -15.05301 -14.46269 -14.10788 -13.88649 -13.73323 -13.27175 -12.95326 -12.80684 -12.70980 -12.46134 -12.13824 -11.75688 -11.72372 -11.27682 -11.14742 -11.00488 -10.64991 -10.45554 -9.97702 -9.46470 -9.17408 -8.91680 -8.67372 -8.48077 -8.05243 -6.53113 -4.64059 0.88597 2.08686 2.65794 2.99940 3.04921 3.06387 3.15420 3.18118 3.25890 3.59345 4.08137 4.63084 4.76358 4.94162 5.16902 5.28804 5.39717 5.65169 5.78693 5.91325 6.03733 6.12036 6.19363 6.24347 6.32444 6.38040 6.54475 6.74242 6.90235 7.17423 7.49585 7.65311 7.70041 8.14585 8.40240 8.45393 9.07753 9.26027 10.53767 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.017748 B = 0.005414 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.283760 B = 5170.692526 C = 6419.152427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.270 1.270 6 H -0.283 1.283 7 C -0.540 4.540 8 H 0.074 0.926 9 C 0.244 3.756 10 O -0.570 6.570 11 C 0.063 3.937 12 N -0.631 5.631 13 C 0.594 3.406 14 O -0.541 6.541 15 C 0.024 3.976 16 C -0.139 4.139 17 C -0.108 4.108 18 C -0.025 4.025 19 C 0.556 3.444 20 O -0.507 6.507 21 O -0.515 6.515 22 N -0.504 5.504 23 H 0.429 0.571 24 C 0.116 3.884 25 H 0.274 0.726 26 H 0.393 0.607 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.418 0.582 32 H 0.076 0.924 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.245 -3.755 7.642 9.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.194 1.194 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.092 0.908 9 C 0.202 3.798 10 O -0.382 6.382 11 C -0.059 4.059 12 N -0.364 5.364 13 C 0.383 3.617 14 O -0.419 6.419 15 C -0.096 4.096 16 C -0.165 4.165 17 C -0.134 4.134 18 C -0.140 4.140 19 C 0.400 3.600 20 O -0.395 6.395 21 O -0.327 6.327 22 N -0.104 5.104 23 H 0.272 0.728 24 C -0.005 4.005 25 H 0.085 0.915 26 H 0.248 0.752 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.177 0.823 30 H 0.175 0.825 31 H 0.278 0.722 32 H 0.095 0.905 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.797 -5.031 7.206 9.223 hybrid contribution -0.386 2.252 0.663 2.380 sum -3.183 -2.779 7.869 8.932 Atomic orbital electron populations 1.69386 1.06203 1.28411 1.49741 1.25083 0.95054 0.99999 0.92854 0.86303 0.79879 0.81790 0.78426 1.20282 1.19442 1.20837 1.21485 0.94041 0.89714 1.52516 0.90811 1.19785 0.85622 0.91478 0.82875 1.86084 1.47029 1.49920 1.55188 1.24581 0.99270 0.77931 1.04157 1.50223 1.40345 1.04290 1.41574 1.16817 0.81627 0.82413 0.80833 1.90780 1.55542 1.39265 1.56330 1.20990 0.99665 0.88719 1.00242 1.21245 0.99085 0.97018 0.99120 1.21252 0.99907 0.92040 1.00233 1.19377 1.00627 0.92756 1.01205 1.19627 0.80290 0.80147 0.79892 1.90923 1.40414 1.68914 1.39277 1.84613 1.62743 1.21126 1.64264 1.42536 1.28317 1.10176 1.29415 0.72787 1.23517 0.93256 0.92429 0.91329 0.91533 0.75226 0.89261 0.91656 0.82314 0.82474 0.72230 0.90542 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.35 11.20 55.43 0.62 -20.72 16 2 C 0.07 1.71 5.40 -17.82 -0.10 1.62 16 3 Si 0.91 18.48 29.54 -169.99 -5.02 13.46 16 4 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 6 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.54 -12.65 8.61 -34.44 -0.30 -12.94 16 8 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.24 5.44 1.40 -90.84 -0.13 5.31 16 10 O -0.57 -13.81 13.49 -35.23 -0.48 -14.29 16 11 C 0.06 1.24 6.76 -2.84 -0.02 1.22 16 12 N -0.63 -12.50 3.61 -179.41 -0.65 -13.15 16 13 C 0.59 11.76 8.04 -12.56 -0.10 11.65 16 14 O -0.54 -11.93 17.60 5.27 0.09 -11.84 16 15 C 0.02 0.41 6.99 -82.10 -0.57 -0.16 16 16 C -0.14 -2.05 10.60 -39.25 -0.42 -2.46 16 17 C -0.11 -1.45 10.61 -39.22 -0.42 -1.87 16 18 C -0.02 -0.35 7.07 -82.11 -0.58 -0.93 16 19 C 0.56 7.37 8.33 34.34 0.29 7.65 16 20 O -0.51 -7.57 17.66 -19.29 -0.34 -7.91 16 21 O -0.51 -5.51 13.44 -40.82 -0.55 -6.06 16 22 N -0.50 -7.67 5.90 -5.90 -0.03 -7.71 16 23 H 0.43 6.41 5.72 -40.82 -0.23 6.18 16 24 C 0.12 2.35 8.23 -2.96 -0.02 2.33 16 25 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 26 H 0.39 9.60 6.60 45.56 0.30 9.90 16 27 H 0.09 1.65 8.09 -51.93 -0.42 1.22 16 28 H 0.07 1.25 6.51 -51.93 -0.34 0.91 16 29 H 0.16 2.10 8.06 -52.48 -0.42 1.67 16 30 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.42 2.39 9.11 45.56 0.42 2.80 16 32 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.09 1.67 8.09 -51.93 -0.42 1.25 16 LS Contribution 300.30 15.07 4.53 4.53 Total: -1.00 -28.68 300.30 -5.70 -34.38 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -1.51 Total: 17.90 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: -2.37 Total: 11.41 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: -0.06 Total: -41.58 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -1.27 Total: -40.10 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.46 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.68 -5.70 -34.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062897.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.035 kcal (2) G-P(sol) polarization free energy of solvation -28.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds