Wall clock time and date at job start Tue Mar 31 2020 01:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2 11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2 12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7 13 13 C 1.34774 * 134.45633 * 204.64086 * 12 11 9 14 14 O 1.21609 * 120.00430 * 179.86569 * 13 12 11 15 15 C 1.47329 * 119.99852 * 359.87322 * 13 12 11 16 16 C 1.37947 * 125.88853 * 179.69246 * 15 13 12 17 17 C 1.39421 * 107.47634 * 179.89764 * 16 15 13 18 18 C 1.38014 * 107.44540 * 0.35936 * 17 16 15 19 19 C 1.47143 * 125.90821 * 179.77840 * 18 17 16 20 20 O 1.21533 * 120.00084 * 359.97438 * 19 18 17 21 21 O 1.34821 * 119.99586 * 179.97438 * 19 18 17 22 22 N 1.36705 * 125.88991 * 359.97438 * 15 13 12 23 23 H 0.97005 * 125.66266 * 359.97362 * 22 15 13 24 24 C 1.47586 * 91.05425 * 24.54926 * 12 11 9 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 0.96700 * 113.99800 * 309.66654 * 10 9 7 27 27 H 1.08995 * 113.76496 * 336.35212 * 11 9 7 28 28 H 1.09005 * 113.76577 * 107.74446 * 11 9 7 29 29 H 1.08003 * 126.26154 * 359.97438 * 16 15 13 30 30 H 1.07992 * 126.27958 * 180.13701 * 17 16 15 31 31 H 0.96698 * 116.99824 * 179.97438 * 21 19 18 32 32 H 1.08993 * 113.76952 * 221.15022 * 24 12 11 33 33 H 1.08995 * 113.86700 * 89.76371 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7562 -2.9292 1.3924 12 7 1.1919 -4.2900 1.0142 13 6 0.8427 -5.5338 1.3981 14 8 1.3861 -6.4998 0.8977 15 6 -0.1976 -5.7232 2.4240 16 6 -0.6516 -6.9353 2.9011 17 6 -1.6302 -6.6687 3.8578 18 6 -1.7630 -5.2976 3.9428 19 6 -2.6900 -4.5736 4.8269 20 8 -3.4283 -5.1905 5.5694 21 8 -2.7204 -3.2258 4.8131 22 7 -0.8833 -4.7283 3.0633 23 1 -0.7658 -3.7765 2.9174 24 6 2.1609 -3.7402 0.0462 25 1 -0.4850 0.8401 0.0004 26 1 -0.3474 -1.7969 -1.0267 27 1 1.3275 -2.4975 2.2141 28 1 -0.3215 -2.8326 1.5249 29 1 -0.3105 -7.9121 2.5912 30 1 -2.1852 -7.4009 4.4253 31 1 -3.3461 -2.7947 5.4111 32 1 2.2027 -4.2899 -0.8940 33 1 3.1462 -3.5468 0.4700 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601062897.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:34 Heat of formation + Delta-G solvation = -114.587037 kcal Electronic energy + Delta-G solvation = -21682.214637 eV Core-core repulsion = 18095.223850 eV Total energy + Delta-G solvation = -3586.990787 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.72932 -41.19076 -40.54365 -38.98830 -37.22861 -35.91935 -34.18111 -32.48592 -31.58759 -30.02978 -27.39439 -27.22747 -25.46921 -23.05383 -21.79064 -21.30764 -20.78636 -19.62199 -19.26468 -18.67996 -17.95376 -17.31301 -17.04243 -16.78762 -16.52729 -16.01824 -15.49549 -15.20015 -14.86186 -14.70026 -14.39035 -14.29473 -13.88986 -13.84913 -13.72562 -13.45857 -12.92440 -12.77659 -12.72182 -12.28709 -12.26101 -12.08644 -11.59494 -11.14525 -10.69019 -10.37683 -10.29087 -9.87874 -9.51069 -8.29676 -6.46313 -0.29018 0.88671 1.45996 1.50586 1.55060 1.59351 1.73953 1.92701 2.03401 2.17074 2.39547 2.92871 3.25858 3.68762 3.87450 4.01204 4.07949 4.26151 4.37828 4.49049 4.60924 4.68912 4.72665 4.77655 5.01325 5.15860 5.31758 5.45856 5.62019 5.70330 5.88042 5.98482 6.59457 6.60145 6.82760 6.91251 7.27146 7.39596 8.76355 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.017748 B = 0.005414 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.283760 B = 5170.692526 C = 6419.152427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.037 3.963 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.285 1.285 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.224 3.776 10 O -0.585 6.585 11 C 0.080 3.920 12 N -0.633 5.633 13 C 0.592 3.408 14 O -0.572 6.572 15 C -0.007 4.007 16 C -0.127 4.127 17 C -0.103 4.103 18 C -0.023 4.023 19 C 0.565 3.435 20 O -0.523 6.523 21 O -0.511 6.511 22 N -0.503 5.503 23 H 0.428 0.572 24 C 0.115 3.885 25 H 0.276 0.724 26 H 0.388 0.612 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.172 0.828 30 H 0.183 0.817 31 H 0.440 0.560 32 H 0.066 0.934 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.631 -3.451 9.014 10.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.165 4.165 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.211 1.211 7 C -0.594 4.594 8 H 0.093 0.907 9 C 0.183 3.817 10 O -0.397 6.397 11 C -0.043 4.043 12 N -0.366 5.366 13 C 0.383 3.617 14 O -0.453 6.453 15 C -0.126 4.126 16 C -0.153 4.153 17 C -0.129 4.129 18 C -0.139 4.139 19 C 0.409 3.591 20 O -0.413 6.413 21 O -0.326 6.326 22 N -0.103 5.103 23 H 0.271 0.729 24 C -0.006 4.006 25 H 0.086 0.914 26 H 0.243 0.757 27 H 0.120 0.880 28 H 0.086 0.914 29 H 0.189 0.811 30 H 0.201 0.799 31 H 0.304 0.696 32 H 0.085 0.915 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.190 -4.707 8.593 10.304 hybrid contribution -0.321 2.170 0.257 2.208 sum -3.511 -2.537 8.850 9.853 Atomic orbital electron populations 1.69445 1.07002 1.28998 1.49967 1.25697 0.95737 1.02429 0.92592 0.85419 0.78534 0.78476 0.78395 1.19714 1.19613 1.21093 1.21701 0.94267 0.90501 1.52911 0.90736 1.20054 0.85840 0.92000 0.83853 1.86073 1.47467 1.49739 1.56385 1.24383 0.99568 0.77491 1.02850 1.50208 1.40282 1.04601 1.41495 1.17181 0.81813 0.81744 0.80971 1.90749 1.56862 1.39934 1.57708 1.20678 1.00671 0.89971 1.01284 1.21505 0.98512 0.96852 0.98472 1.21557 0.99370 0.92227 0.99732 1.19745 1.00087 0.93415 1.00613 1.19402 0.79646 0.80784 0.79252 1.90926 1.41004 1.69501 1.39891 1.84574 1.63406 1.19825 1.64819 1.42441 1.28442 1.09891 1.29558 0.72895 1.23545 0.94035 0.91566 0.91478 0.91405 0.75737 0.88042 0.91392 0.81102 0.79947 0.69622 0.91517 0.87187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -43.07 11.20 21.45 0.24 -42.83 16 2 C 0.04 1.69 5.40 84.66 0.46 2.15 16 3 Si 0.97 37.21 29.54 68.60 2.03 39.24 16 4 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.29 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.56 -25.82 8.61 25.60 0.22 -25.60 16 8 H 0.07 3.36 7.81 -2.91 -0.02 3.34 16 9 C 0.22 9.96 1.40 -10.88 -0.02 9.95 16 10 O -0.58 -28.69 13.49 -148.98 -2.01 -30.70 16 11 C 0.08 3.06 6.76 86.45 0.58 3.65 16 12 N -0.63 -24.98 3.61 -843.60 -3.05 -28.03 16 13 C 0.59 23.35 8.04 86.64 0.70 24.05 16 14 O -0.57 -25.36 17.60 -4.06 -0.07 -25.44 16 15 C -0.01 -0.22 6.99 40.71 0.28 0.06 16 16 C -0.13 -3.53 10.60 22.49 0.24 -3.29 16 17 C -0.10 -2.51 10.61 22.50 0.24 -2.27 16 18 C -0.02 -0.61 7.07 40.65 0.29 -0.32 16 19 C 0.56 13.61 8.33 70.16 0.58 14.20 16 20 O -0.52 -14.36 17.66 19.73 0.35 -14.01 16 21 O -0.51 -9.64 13.44 -57.33 -0.77 -10.41 16 22 N -0.50 -14.64 5.90 -172.59 -1.02 -15.66 16 23 H 0.43 12.31 5.72 -92.70 -0.53 11.78 16 24 C 0.12 4.68 8.23 86.49 0.71 5.39 16 25 H 0.28 12.40 8.31 -92.71 -0.77 11.63 16 26 H 0.39 19.27 6.60 -74.06 -0.49 18.78 16 27 H 0.10 3.63 8.09 -2.39 -0.02 3.61 16 28 H 0.07 2.56 6.51 -2.38 -0.02 2.55 16 29 H 0.17 4.22 8.06 -2.91 -0.02 4.20 16 30 H 0.18 3.47 8.06 -2.91 -0.02 3.44 16 31 H 0.44 3.78 9.11 -74.06 -0.67 3.11 16 32 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.11 3.98 8.09 -2.39 -0.02 3.96 16 Total: -1.00 -59.72 300.30 -0.50 -60.22 By element: Atomic # 1 Polarization: 40.14 SS G_CDS: -0.49 Total: 39.66 kcal Atomic # 6 Polarization: 23.66 SS G_CDS: 4.29 Total: 27.95 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -3.83 Total: -86.51 kcal Atomic # 8 Polarization: -78.05 SS G_CDS: -2.50 Total: -80.55 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Total: -59.72 -0.50 -60.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062897.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.365 kcal (2) G-P(sol) polarization free energy of solvation -59.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds