Wall clock time and date at job start Tue Mar 31 2020 01:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00451 * 2 1 4 4 H 1.48508 * 109.46868 * 270.00042 * 3 2 1 5 5 H 1.48498 * 109.47184 * 29.99935 * 3 2 1 6 6 H 1.48498 * 109.47171 * 149.99908 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46946 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46891 * 180.02562 * 10 9 7 12 12 O 1.45206 * 109.47091 * 179.97438 * 11 10 9 13 13 C 1.34661 * 116.99891 * 179.97438 * 12 11 10 14 14 O 1.21402 * 120.00155 * 359.97438 * 13 12 11 15 15 C 1.48228 * 119.99839 * 180.02562 * 13 12 11 16 16 C 1.39706 * 120.00122 * 179.72321 * 15 13 12 17 17 N 1.31799 * 119.99668 * 179.72985 * 16 15 13 18 18 C 1.32967 * 120.00294 * 0.56649 * 17 16 15 19 19 C 1.48227 * 120.00292 * 179.70600 * 18 17 16 20 20 O 1.21413 * 119.99924 * 179.97438 * 19 18 17 21 21 O 1.34663 * 119.99972 * 359.97438 * 19 18 17 22 22 C 1.39674 * 119.99907 * 359.69078 * 18 17 16 23 23 N 1.31823 * 119.99769 * 0.02562 * 22 18 17 24 24 H 0.97007 * 119.99539 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 26 26 H 1.08996 * 109.46805 * 299.99825 * 9 7 2 27 27 H 1.08992 * 109.47554 * 60.00123 * 10 9 7 28 28 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 29 29 H 1.09001 * 109.47142 * 59.99823 * 11 10 9 30 30 H 1.09004 * 109.47006 * 299.99770 * 11 10 9 31 31 H 1.07996 * 120.00293 * 0.02562 * 16 15 13 32 32 H 0.96700 * 116.99743 * 179.97438 * 21 19 18 33 33 H 1.07992 * 119.99843 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 8 2.4235 -6.0908 -0.0007 13 6 1.9087 -7.3352 -0.0008 14 8 0.7051 -7.4942 0.0001 15 6 2.8115 -8.5107 -0.0008 16 6 2.2775 -9.8017 0.0049 17 7 3.0803 -10.8469 -0.0005 18 6 4.3986 -10.6728 -0.0001 19 6 5.3015 -11.8483 0.0004 20 8 6.5052 -11.6892 0.0004 21 8 4.7868 -13.0927 0.0010 22 6 4.9325 -9.3821 -0.0004 23 7 4.1295 -8.3367 -0.0006 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8903 27 1 2.8717 -3.6045 0.8904 28 1 2.8717 -3.6044 -0.8895 29 1 0.8536 -5.0445 -0.8903 30 1 0.8530 -5.0451 0.8897 31 1 1.2069 -9.9432 0.0090 32 1 5.4152 -13.8277 0.0009 33 1 6.0031 -9.2407 0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065657.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:48 Heat of formation + Delta-G solvation = -153.554757 kcal Electronic energy + Delta-G solvation = -19979.955953 eV Core-core repulsion = 16391.275399 eV Total energy + Delta-G solvation = -3588.680554 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.89359 -41.52572 -40.83912 -38.02784 -37.32980 -36.10654 -35.82789 -33.74566 -33.34637 -29.34068 -28.08695 -26.12174 -25.36726 -23.93181 -22.59344 -22.16883 -20.14382 -19.37305 -18.79356 -18.69177 -18.40388 -17.91519 -17.80165 -17.15711 -16.48779 -16.30754 -16.07800 -15.79284 -15.38323 -14.79620 -14.31065 -14.06697 -13.89445 -13.77184 -13.17957 -12.88268 -12.82485 -12.67699 -12.53337 -12.46157 -12.28840 -12.17723 -12.11934 -11.54510 -11.43757 -11.25981 -11.00807 -10.69703 -10.56228 -8.21265 -6.32136 -1.58596 -0.41439 0.65493 1.12375 1.32870 1.42408 1.43302 1.52612 1.54932 2.30348 2.41048 2.50486 2.65698 2.86277 3.12848 3.40354 3.54143 4.00629 4.01160 4.02584 4.25415 4.40868 4.69620 4.80524 4.81528 5.05518 5.20290 5.26391 5.49660 5.56921 5.65566 5.81440 6.01143 6.20141 6.39557 6.78590 6.83597 7.37178 8.90758 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.041789 B = 0.002511 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.866489 B =11147.674951 C =11791.791113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.026 3.974 10 C -0.095 4.095 11 C 0.075 3.925 12 O -0.336 6.336 13 C 0.522 3.478 14 O -0.501 6.501 15 C 0.072 3.928 16 C 0.124 3.876 17 N -0.391 5.391 18 C 0.067 3.933 19 C 0.559 3.441 20 O -0.508 6.508 21 O -0.486 6.486 22 C 0.122 3.878 23 N -0.403 5.403 24 H 0.264 0.736 25 H 0.000 1.000 26 H 0.000 1.000 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.216 0.784 32 H 0.441 0.559 33 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.592 -26.358 0.010 28.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.133 4.133 11 C 0.002 3.998 12 O -0.251 6.251 13 C 0.363 3.637 14 O -0.389 6.389 15 C -0.068 4.068 16 C -0.037 4.037 17 N -0.108 5.108 18 C -0.074 4.074 19 C 0.400 3.600 20 O -0.396 6.396 21 O -0.299 6.299 22 C -0.040 4.040 23 N -0.120 5.120 24 H 0.073 0.927 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.233 0.767 32 H 0.305 0.695 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 9.127 -25.903 0.011 27.464 hybrid contribution 0.241 0.674 -0.011 0.716 sum 9.369 -25.230 0.000 26.913 Atomic orbital electron populations 1.70090 1.07774 1.27897 1.51480 1.25980 0.95794 1.03408 0.94667 0.85417 0.78650 0.78298 0.78505 1.19763 1.20806 1.18696 1.21625 0.93708 0.91963 1.50796 0.91852 1.18932 0.94219 0.92218 0.95702 1.21464 0.98807 0.90424 1.02558 1.23351 0.90763 0.82900 1.02774 1.86638 1.41657 1.14545 1.82243 1.20723 0.86206 0.83562 0.73166 1.90875 1.15566 1.86841 1.45592 1.21462 0.91347 0.92991 1.01040 1.24205 1.03222 0.85192 0.91080 1.68765 1.03173 1.32661 1.06158 1.21676 0.91549 0.93659 1.00518 1.19798 0.84869 0.83213 0.72169 1.90970 1.15706 1.86909 1.46044 1.84609 1.45805 1.15713 1.83820 1.24336 1.03126 0.85575 0.90974 1.68708 1.03249 1.33943 1.06147 0.92682 0.98205 0.98185 0.91605 0.91596 0.90856 0.90846 0.76707 0.69501 0.76540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.97 43.83 29.54 68.60 2.03 45.85 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.54 -30.47 9.11 25.60 0.23 -30.23 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.03 1.36 4.97 29.85 0.15 1.51 16 10 C -0.09 -3.85 5.53 30.59 0.17 -3.68 16 11 C 0.08 2.63 5.47 71.98 0.39 3.03 16 12 O -0.34 -10.80 10.05 -55.70 -0.56 -11.36 16 13 C 0.52 14.64 7.96 70.48 0.56 15.20 16 14 O -0.50 -15.27 16.13 20.15 0.33 -14.95 16 15 C 0.07 1.60 6.76 41.99 0.28 1.88 16 16 C 0.12 2.15 10.77 85.05 0.92 3.07 16 17 N -0.39 -6.68 10.27 -183.33 -1.88 -8.56 16 18 C 0.07 1.06 6.76 41.98 0.28 1.35 16 19 C 0.56 7.47 8.33 70.48 0.59 8.06 16 20 O -0.51 -8.49 17.13 20.12 0.34 -8.15 16 21 O -0.49 -4.22 13.26 -55.72 -0.74 -4.96 16 22 C 0.12 1.97 10.77 85.04 0.92 2.88 16 23 N -0.40 -8.86 10.27 -183.33 -1.88 -10.74 16 24 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 25 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 26 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 27 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 29 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 31 H 0.22 2.84 7.64 -2.91 -0.02 2.82 16 32 H 0.44 -0.75 9.11 -74.06 -0.67 -1.43 16 33 H 0.22 2.43 7.64 -2.91 -0.02 2.41 16 Total: -1.00 -70.85 312.43 3.36 -67.49 By element: Atomic # 1 Polarization: -2.72 SS G_CDS: 0.49 Total: -2.23 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 4.95 Total: 3.49 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -3.48 Total: -75.18 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.63 Total: -39.42 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -70.85 3.36 -67.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065657.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.068 kcal (2) G-P(sol) polarization free energy of solvation -70.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds