Wall clock time and date at job start Tue Mar 31 2020 01:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 119.99847 * 2 1 4 4 H 1.48508 * 109.46925 * 270.00233 * 3 2 1 5 5 H 1.48498 * 109.47409 * 29.99643 * 3 2 1 6 6 H 1.48499 * 109.47203 * 150.00146 * 3 2 1 7 7 C 1.38886 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00169 * 187.36111 * 7 2 1 9 9 N 1.37215 * 120.00233 * 7.36694 * 7 2 1 10 10 C 1.34775 * 119.99731 * 230.16334 * 9 7 2 11 11 O 1.21271 * 120.00274 * 184.96713 * 10 9 7 12 12 C 1.50702 * 120.00053 * 4.96812 * 10 9 7 13 13 O 1.42901 * 109.46987 * 184.92755 * 12 10 9 14 14 C 1.42902 * 113.99911 * 179.97438 * 13 12 10 15 15 C 1.50702 * 109.47134 * 180.02562 * 14 13 12 16 16 O 1.20828 * 120.00041 * 0.02562 * 15 14 13 17 17 O 1.34231 * 119.99835 * 180.02562 * 15 14 13 18 18 C 1.39421 * 120.00117 * 50.15774 * 9 7 2 19 19 C 1.39064 * 119.69829 * 5.00437 * 18 9 7 20 20 C 1.38383 * 119.09962 * 180.02562 * 19 18 9 21 21 C 1.38826 * 118.49118 * 0.02562 * 20 19 18 22 22 C 1.38147 * 119.31351 * 0.25176 * 21 20 19 23 23 N 1.31878 * 120.84708 * 359.47579 * 22 21 20 24 24 H 0.96999 * 120.00327 * 354.99602 * 1 2 3 25 25 H 1.09001 * 109.46933 * 304.92775 * 12 10 9 26 26 H 1.08996 * 109.47056 * 64.92902 * 12 10 9 27 27 H 1.09003 * 109.47037 * 299.99980 * 14 13 12 28 28 H 1.08993 * 109.46930 * 60.00260 * 14 13 12 29 29 H 0.96699 * 116.99549 * 179.97438 * 17 15 14 30 30 H 1.07998 * 120.45193 * 0.04574 * 19 18 9 31 31 H 1.08005 * 120.75222 * 180.02562 * 20 19 18 32 32 H 1.07998 * 120.34206 * 179.97438 * 21 20 19 33 33 H 1.07994 * 119.57470 * 179.74206 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4002 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4403 0.7000 7 6 2.0086 -1.2028 0.0005 8 1 3.0819 -1.2066 0.1204 9 7 1.3310 -2.3863 -0.1513 10 6 1.5437 -3.3999 0.7112 11 8 1.0142 -4.4751 0.5257 12 6 2.4394 -3.1972 1.9060 13 8 2.5976 -4.4372 2.5985 14 6 3.4343 -4.3550 3.7540 15 6 3.5307 -5.7122 4.4020 16 8 2.9436 -6.6534 3.9231 17 8 4.2689 -5.8754 5.5112 18 6 0.4226 -2.5402 -1.1976 19 6 0.2843 -1.5308 -2.1441 20 6 -0.6214 -1.6964 -3.1772 21 6 -1.3609 -2.8702 -3.2278 22 6 -1.1762 -3.8286 -2.2502 23 7 -0.3017 -3.6454 -1.2803 24 1 -0.4850 0.8368 0.0733 25 1 3.4139 -2.8401 1.5731 26 1 1.9920 -2.4621 2.5749 27 1 4.4294 -4.0221 3.4590 28 1 3.0080 -3.6437 4.4613 29 1 4.3001 -6.7641 5.8908 30 1 0.8760 -0.6301 -2.0741 31 1 -0.7500 -0.9297 -3.9270 32 1 -2.0765 -3.0304 -4.0207 33 1 -1.7523 -4.7415 -2.2832 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069468.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:15 Heat of formation + Delta-G solvation = -125.780742 kcal Electronic energy + Delta-G solvation = -21564.252111 eV Core-core repulsion = 17976.775929 eV Total energy + Delta-G solvation = -3587.476182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.55410 -41.23625 -39.81437 -38.40195 -37.06070 -36.86352 -33.93745 -32.78203 -31.46961 -30.22521 -27.95443 -27.09401 -24.22048 -23.62120 -22.75758 -21.24858 -19.92413 -19.09042 -18.43444 -17.77035 -17.45456 -17.38428 -16.97772 -16.74483 -16.49788 -16.18170 -15.89825 -15.44473 -15.15623 -14.80050 -14.31378 -14.17852 -13.66491 -13.50605 -13.27741 -13.06783 -12.96764 -12.78290 -12.58601 -12.37007 -11.99364 -11.56495 -11.18505 -10.84117 -10.79487 -10.67092 -10.42799 -9.68932 -8.82086 -8.23733 -6.41100 0.53353 0.76233 1.14885 1.45284 1.49376 1.54363 1.64739 1.99378 2.25619 2.54197 2.91639 3.31427 3.44816 3.85311 4.08342 4.21313 4.21917 4.25370 4.31316 4.39015 4.48606 4.55970 4.66254 4.77526 5.16855 5.37074 5.42051 5.55778 5.58842 5.87475 5.93156 6.15225 6.41560 6.98288 6.99511 7.13843 7.50737 7.97488 8.66783 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.016508 B = 0.005572 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.751667 B = 5023.794228 C = 6560.149129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.018 3.982 3 Si 0.991 3.009 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.246 1.246 7 C -0.382 4.382 8 H 0.117 0.883 9 N -0.398 5.398 10 C 0.470 3.530 11 O -0.551 6.551 12 C 0.081 3.919 13 O -0.392 6.392 14 C 0.061 3.939 15 C 0.486 3.514 16 O -0.548 6.548 17 O -0.499 6.499 18 C 0.350 3.650 19 C -0.156 4.156 20 C -0.078 4.078 21 C -0.216 4.216 22 C 0.087 3.913 23 N -0.540 5.540 24 H 0.276 0.724 25 H 0.110 0.890 26 H 0.099 0.901 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.433 0.567 30 H 0.128 0.872 31 H 0.154 0.846 32 H 0.161 0.839 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.290 1.763 3.963 8.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.188 4.188 3 Si 0.813 3.187 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.169 1.169 7 C -0.508 4.508 8 H 0.134 0.866 9 N -0.112 5.112 10 C 0.260 3.740 11 O -0.428 6.428 12 C 0.003 3.997 13 O -0.311 6.311 14 C -0.015 4.015 15 C 0.329 3.671 16 O -0.438 6.438 17 O -0.314 6.314 18 C 0.120 3.880 19 C -0.180 4.180 20 C -0.104 4.104 21 C -0.238 4.238 22 C -0.071 4.071 23 N -0.257 5.257 24 H 0.086 0.914 25 H 0.127 0.873 26 H 0.116 0.884 27 H 0.149 0.851 28 H 0.143 0.857 29 H 0.295 0.705 30 H 0.146 0.854 31 H 0.172 0.828 32 H 0.179 0.821 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.793 0.634 4.222 8.023 hybrid contribution -0.154 0.864 -0.199 0.900 sum 6.639 1.497 4.022 7.905 Atomic orbital electron populations 1.70122 1.08117 1.29579 1.43527 1.26467 0.95859 1.03291 0.93193 0.84957 0.78826 0.75914 0.78994 1.19555 1.21042 1.16870 1.19938 0.93055 0.81585 1.56193 0.86559 1.41374 1.35685 1.13653 1.20468 1.21391 0.83575 0.84320 0.84740 1.90664 1.50646 1.26946 1.74547 1.22005 1.00427 0.85293 0.92011 1.87977 1.69855 1.32205 1.41064 1.21996 0.98942 0.91632 0.88969 1.23226 0.74539 0.91028 0.78291 1.90783 1.44843 1.44292 1.63860 1.84414 1.65201 1.41986 1.39760 1.19173 0.90935 0.89845 0.88003 1.21539 1.02316 0.99397 0.94798 1.21653 0.94063 0.97768 0.96948 1.22091 1.04081 0.95346 1.02254 1.22874 0.94164 0.99790 0.90304 1.67551 1.08770 1.23129 1.26253 0.91374 0.87262 0.88354 0.85144 0.85721 0.70473 0.85377 0.82788 0.82148 0.82063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.30 11.12 21.65 0.24 -44.06 16 2 C 0.02 0.83 3.59 84.91 0.30 1.13 16 3 Si 0.99 34.42 29.56 68.60 2.03 36.45 16 4 H -0.27 -9.28 7.11 99.48 0.71 -8.57 16 5 H -0.28 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.25 -7.71 7.11 99.48 0.71 -7.01 16 7 C -0.38 -17.73 7.67 84.01 0.64 -17.09 16 8 H 0.12 4.79 7.36 -2.91 -0.02 4.77 16 9 N -0.40 -20.74 2.68 -464.38 -1.24 -21.99 16 10 C 0.47 24.41 7.66 87.66 0.67 25.08 16 11 O -0.55 -33.16 14.80 15.99 0.24 -32.93 16 12 C 0.08 3.11 5.33 71.24 0.38 3.49 16 13 O -0.39 -15.27 9.41 -120.77 -1.14 -16.41 16 14 C 0.06 1.50 6.53 71.24 0.47 1.97 16 15 C 0.49 13.03 8.40 71.24 0.60 13.63 16 16 O -0.55 -20.98 17.26 28.39 0.49 -20.49 16 17 O -0.50 -8.39 13.42 -51.43 -0.69 -9.09 16 18 C 0.35 18.64 6.63 132.91 0.88 19.52 16 19 C -0.16 -7.38 7.61 22.50 0.17 -7.21 16 20 C -0.08 -3.03 10.17 22.45 0.23 -2.80 16 21 C -0.22 -7.85 10.11 22.39 0.23 -7.63 16 22 C 0.09 3.75 11.18 84.66 0.95 4.70 16 23 N -0.54 -29.12 7.92 -192.96 -1.53 -30.65 16 24 H 0.28 13.12 8.32 -92.71 -0.77 12.35 16 25 H 0.11 3.43 7.55 -2.39 -0.02 3.41 16 26 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 27 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.43 3.65 9.10 -74.06 -0.67 2.97 16 30 H 0.13 6.10 5.55 -2.91 -0.02 6.08 16 31 H 0.15 4.66 8.06 -2.91 -0.02 4.63 16 32 H 0.16 4.28 8.06 -2.91 -0.02 4.26 16 33 H 0.16 5.90 8.06 -2.91 -0.02 5.87 16 Total: -1.00 -81.46 298.84 4.40 -77.05 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.49 Total: 27.30 kcal Atomic # 6 Polarization: 29.29 SS G_CDS: 5.52 Total: 34.80 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -2.53 Total: -96.70 kcal Atomic # 8 Polarization: -77.81 SS G_CDS: -1.10 Total: -78.91 kcal Atomic # 14 Polarization: 34.42 SS G_CDS: 2.03 Total: 36.45 kcal Total: -81.46 4.40 -77.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069468.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.728 kcal (2) G-P(sol) polarization free energy of solvation -81.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds